Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011425

Physical Location & Seq

Genomic Coordinates Forward (+)

30246171 .. 30246578

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G356700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATCATCATCACATTCACACACCAGCTGCAACCTTGGACGACGATGATGATGTTGAGGAAACAGCAACACTCAGCCACACTCAAAATTCGGCGGCCAGCAGCTGCAGCGGCAGGCTTTCTCATCTTCCGACAGGAGGAGAAGATGAAGAAGATCCAACGACTCTGATCAGGGTGAGGGCCCAACAACATCCTCCTGTCACCTACTTGATGGGACCCAACTCGTTGCTCCAACATGTCTTGCGAAACTACGATACACGTAACTCTCTTCTCTATGAATCAAAGCGTTTCCTTTACAATGGGAATAGGGTTCGCCAAAACCACACTCCGGCTGATTTGGGAATGGAGGACGGTGATGCCATTGATGCAATGTCCCACATGTTGGGTGGTGGGGCTGCTGTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

136

Amino Acids

14.8

Weight (kDa)

5.13

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32765
fragaria_vesca	FvH4_2g01621
malus_domestica	MD04G1236700.v1.1
prunus_persica	Prupe.6G356700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244421 RchiOBHm_Chr6g0244451
rosa_multiflora	Rmu_sc0000633.1_g000006
rosa_roxburghii	Rroxscaffold_6G00426880 Rroxscaffold_7G00215850
rosa_rugosa	Rorug05G0508500 Rorug05G0508900
rosa_samantha	Rh3BG013200 Rh3CG012300 Rh3DG014000 Rh6AG023600 Rh6AG023900 Rh6BG019300 Rh6CG016500 Rh6DG017600
rosa_wichuraiana	Rw6G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	382
AciI	CCGC	2 cut(s)	95, 111
AclWI	GGATC	2 cut(s)	12, 149
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	88
AfiI	CCNNNNNNNGG	3 cut(s)	137, 328, 382
AflIII	ACRYGT	3 cut(s)	235, 257, 378
AluBI	AGCT	2 cut(s)	29, 105
AluI	AGCT	2 cut(s)	29, 105
AlwI	GGATC	2 cut(s)	12, 149
AlwNI	CAGNNNCTG	1 cut(s)	105
AoxI	GGCC	2 cut(s)	96, 180
ApaI	GGGCCC	1 cut(s)	184
ApeKI	GCWGC	5 cut(s)	29, 102, 105, 108, 395
ApoI	RAATTY	1 cut(s)	88
AspS9I	GGNCC	3 cut(s)	180, 181, 215
AsuHPI	GGTGA	3 cut(s)	187, 193, 365
AvaII	GGWCC	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	184
BbvI	GCAGC	5 cut(s)	16, 92, 114, 120, 382
BccI	CCATC	1 cut(s)	205
BclI	TGATCA	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	106
BisI	GCNGC	7 cut(s)	30, 96, 103, 106, 109, 112, 396
BlsI	GCNGC	7 cut(s)	31, 97, 104, 107, 110, 113, 397
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	3 cut(s)	180, 181, 215
BmiI	GGNNCC	3 cut(s)	182, 216, 217
BmsI	GCATC	2 cut(s)	346, 355
BsaAI	YACGTR	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 328, 382
Bse3DI	GCAATG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	190
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	137, 328, 382
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	5 cut(s)	16, 92, 114, 120, 382
BshFI	GGCC	2 cut(s)	98, 182
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	2 cut(s)	228, 358
BslI	CCNNNNNNNGG	3 cut(s)	137, 328, 382
BsmFI	GGGAC	2 cut(s)	228, 358
BsnI	GGCC	2 cut(s)	98, 182
Bsp120I	GGGCCC	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	4, 154, 168
BspACI	CCGC	2 cut(s)	95, 111
BspANI	GGCC	2 cut(s)	98, 182
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	182, 216, 217
BspMAI	CTGCAG	1 cut(s)	110
BspPI	GGATC	2 cut(s)	12, 149
BsrDI	GCAATG	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	3 cut(s)	4, 154, 168
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	100, 116
BstDEI	CTNAG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	3 cut(s)	7, 157, 171
BstMBI	GATC	3 cut(s)	4, 154, 168
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 111, 365
BstNSI	RCATGY	2 cut(s)	239, 382
BstSFI	CTRYAG	1 cut(s)	106
BstSLI	GKGCMC	1 cut(s)	184
BstV1I	GCAGC	5 cut(s)	16, 92, 114, 120, 382
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	98, 182
BtsCI	GGATG	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	100, 116
CaiI	CAGNNNCTG	1 cut(s)	105
Cfr13I	GGNCC	3 cut(s)	180, 181, 215
CviAII	CATG	2 cut(s)	236, 379
CviJI	RGCY	8 cut(s)	29, 78, 98, 105, 118, 182, 332, 395
CviKI_1	RGCY	8 cut(s)	29, 78, 98, 105, 118, 182, 332, 395
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	3 cut(s)	6, 156, 170
DpnII	GATC	3 cut(s)	4, 154, 168
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	215
EcoO109I	RGGNCCY	2 cut(s)	180, 215
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	2 cut(s)	239, 382
FaiI	YATR	3 cut(s)	237, 276, 380
FaqI	GGGAC	2 cut(s)	228, 358
FatI	CATG	2 cut(s)	235, 378
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	7 cut(s)	30, 96, 103, 106, 109, 112, 396
FokI	GGATG	1 cut(s)	177
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	7 cut(s)	30, 96, 103, 106, 109, 112, 396
GluI	GCNGC	7 cut(s)	30, 96, 103, 106, 109, 112, 396
HaeIII	GGCC	2 cut(s)	98, 182
HapII	CCGG	1 cut(s)	329
Hin1II	CATG	2 cut(s)	239, 382
HinfI	GANTC	2 cut(s)	163, 278
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	3 cut(s)	187, 193, 365
Hpy188I	TCNGA	2 cut(s)	132, 168
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	3 cut(s)	32, 108, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 111, 365
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	2 cut(s)	239, 382
KflI	GGGWCCC	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	4, 154, 168
LmnI	GCTCC	1 cut(s)	234
LpnPI	CCDG	7 cut(s)	39, 100, 112, 120, 157, 210, 342
Lsp1109I	GCAGC	5 cut(s)	16, 92, 114, 120, 382
LweI	GCATC	2 cut(s)	346, 355
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	3 cut(s)	199, 260, 400
MalI	GATC	3 cut(s)	6, 156, 170
MboI	GATC	3 cut(s)	4, 154, 168
MboII	GAAGA	5 cut(s)	119, 155, 161, 164, 260
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	3 cut(s)	155, 182, 256
MnlI	CCTC	5 cut(s)	52, 131, 171, 204, 340
MseI	TTAA	1 cut(s)	406
MspA1I	CMGCKG	3 cut(s)	29, 105, 111
MspI	CCGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	3 cut(s)	108, 111, 365
NdeII	GATC	3 cut(s)	4, 154, 168
NlaIII	CATG	2 cut(s)	239, 382
NlaIV	GGNNCC	3 cut(s)	182, 216, 217
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	2 cut(s)	239, 382
PciI	ACATGT	2 cut(s)	235, 378
PfeI	GAWTC	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	7 cut(s)	31, 97, 104, 107, 110, 113, 397
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	260
PpuMI	RGGWCCY	1 cut(s)	215
PscI	ACATGT	2 cut(s)	235, 378
Psp5II	RGGWCCY	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	182, 216, 217
PspOMI	GGGCCC	1 cut(s)	180
PspPI	GGNCC	3 cut(s)	180, 181, 215
PspPPI	RGGWCCY	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	110
PstNI	CAGNNNCTG	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	154
PvuII	CAGCTG	2 cut(s)	29, 105
SaqAI	TTAA	1 cut(s)	406
SatI	GCNGC	7 cut(s)	30, 96, 103, 106, 109, 112, 396
Sau3AI	GATC	3 cut(s)	4, 154, 168
Sau96I	GGNCC	3 cut(s)	180, 181, 215
SchI	GAGTC	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	5 cut(s)	31, 38, 107, 206, 262
SfaNI	GCATC	2 cut(s)	346, 355
SfcI	CTRYAG	1 cut(s)	106
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	2 cut(s)	95, 111
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	1 cut(s)	262
TasI	AATT	1 cut(s)	88
TauI	GCSGC	2 cut(s)	98, 114
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	406
Tru9I	TTAA	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	5 cut(s)	29, 102, 105, 108, 395
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	162, 291
Van91I	CCANNNNNTGG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	1 cut(s)	88
XceI	RCATGY	2 cut(s)	239, 382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.