Rroxscaffold_6G00426880

Small ubiquitin-related modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011425
Physical Location & Seq
Reverse (-)
47546393 .. 47546788
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426880.1

Sequence Viewer

Length: 363 bp
ATGAGTACTACTAACCCAAAAGAAGAACCGATAACGGACGATGAAGTCTATCACATACCCACACTGACACAGGAAACCCTAGTTAGGGTTTCTCTTCCTAAAGAAGAAGATCCTACGATTCTTCTCCGAGTTCAGAGTCAAGAACATCCTGACATATCCTACATGACTAATTACTGCAGACGCACATATCTCGACTTCGAAACGATACGGTTTTCCTTTGAGGGAAAAAGGGTACAGGAGAGTCATATTCCGGAACATTTTGAAATGGAGAATGGCGATGTCATCGACGCATTTACGACTCAGATAGGTGGTGCCATGTATGTTCTTGATTTAGAAAAGTTTAGTAACTTAGCTAGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

120

Amino Acids

13.93

Weight (kDa)

4.56

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 55 - 97 9.6e-06 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 311
AccIII TCCGGA 1 cut(s) 250
AclWI GGATC 1 cut(s) 104
AfaI GTAC 2 cut(s) 7, 234
AfiI CCNNNNNNNGG 2 cut(s) 84, 85
AgsI TTSAA 1 cut(s) 263
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
AlwI GGATC 1 cut(s) 104
Aor13HI TCCGGA 1 cut(s) 250
AsuII TTCGAA 1 cut(s) 198
BanI GGYRCC 1 cut(s) 311
BcgI CGANNNNNNTGC 2 cut(s) 172, 206
BfaI CTAG 2 cut(s) 80, 354
BfmI CTRYAG 1 cut(s) 175
BmcAI AGTACT 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 313
Bpu14I TTCGAA 1 cut(s) 198
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 85
BseAI TCCGGA 1 cut(s) 250
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 84, 85
BseMII CTCAG 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 84, 85
Bsp119I TTCGAA 1 cut(s) 198
Bsp13I TCCGGA 1 cut(s) 250
Bsp143I GATC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 313
BspEI TCCGGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 179
BspPI GGATC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 311
BssMI GATC 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 99
BstBI TTCGAA 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 300, 349
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 62
CseI GACGC 2 cut(s) 189, 296
Csp6I GTAC 2 cut(s) 6, 233
CviAII CATG 2 cut(s) 163, 316
CviJI RGCY 1 cut(s) 353
CviKI_1 RGCY 1 cut(s) 353
CviQI GTAC 2 cut(s) 6, 233
DdeI CTNAG 2 cut(s) 300, 349
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
FaeI CATG 2 cut(s) 166, 319
FaiI YATR 7 cut(s) 56, 155, 164, 187, 246, 317, 321
FatI CATG 2 cut(s) 162, 315
FokI GGATG 1 cut(s) 132
FspBI CTAG 2 cut(s) 80, 354
HapII CCGG 1 cut(s) 251
HgaI GACGC 2 cut(s) 189, 296
Hin1II CATG 2 cut(s) 166, 319
HinfI GANTC 4 cut(s) 118, 136, 241, 298
HpaII CCGG 1 cut(s) 251
Hpy188I TCNGA 3 cut(s) 128, 135, 303
Hpy188III TCNNGA 5 cut(s) 140, 149, 191, 251, 326
Hpy99I CGWCG 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 177
HpyF3I CTNAG 2 cut(s) 300, 349
Hsp92II CATG 2 cut(s) 166, 319
Kpn2I TCCGGA 1 cut(s) 250
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 4 cut(s) 56, 162, 221, 264
MaeI CTAG 2 cut(s) 80, 354
MaeIII GTNAC 2 cut(s) 344, 356
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 5 cut(s) 35, 86, 113, 116, 119
MflI RGATCY 1 cut(s) 109
MluCI AATT 1 cut(s) 169
MlyI GAGTC 3 cut(s) 145, 250, 292
MnlI CCTC 1 cut(s) 214
MroI TCCGGA 1 cut(s) 250
MspI CCGG 1 cut(s) 251
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 166, 319
NlaIV GGNNCC 1 cut(s) 313
NspV TTCGAA 1 cut(s) 198
PfeI GAWTC 1 cut(s) 118
PleI GAGTC 3 cut(s) 144, 249, 292
PpsI GAGTC 3 cut(s) 144, 249, 292
PspN4I GGNNCC 1 cut(s) 313
PstI CTGCAG 1 cut(s) 179
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 2 cut(s) 7, 234
RsaNI GTAC 2 cut(s) 6, 233
Sau3AI GATC 1 cut(s) 109
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 3 cut(s) 145, 250, 292
SetI ASST 2 cut(s) 310, 355
SfcI CTRYAG 1 cut(s) 175
SfuI TTCGAA 1 cut(s) 198
Sse9I AATT 1 cut(s) 169
SspMI CTAG 2 cut(s) 80, 354
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 3 cut(s) 192, 198, 285
TasI AATT 1 cut(s) 169
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 69
XspI CTAG 2 cut(s) 80, 354
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.