Rh6BG019300

Small ubiquitin-related modifier

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
2934321 .. 2934996
676 bp
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UTR
Exon/CDS
Intron
Rh6BG019300.1

Sequence Viewer

Length: 372 bp
ATGAGGAGATTTCGTAAAACCAAAATCTCATCATTGGAGATAGTTAGTAAGACATCATTCTCATCAATAGAGAGTGAAAGGAGATTAGCAACCACCATGGAATCACTTGTCAAACTCACTCTGAAGGAAGACGAAGAACCGATAATTCTCCAGGTGCAGAATCAGAGTCATGGTGACATCTACTACAGGACCGGTCGCACCGTATCACTGGGTAATATATTGAAAGACTACTGCGAACGTAAAGGTTTGGTGTATGAAGAAATGCGTTTCATCTACGATGGAAAAAGGGTACGCTCAACTCACACCCCACAACAACTGGAAATGGAGGATGATTTTGTTATTGATGCAATGTCCGAGCAGATTGGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

14.33

Weight (kDa)

6.15

Isoelectric Point (pI)

61.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 50 - 117 3.3e-11 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 51 - 119 4.6e-06 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 1 cut(s) 291
AgeI ACCGGT 1 cut(s) 191
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 1 cut(s) 150
AsiGI ACCGGT 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 135
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 2 cut(s) 213, 321
Bse3DI GCAATG 1 cut(s) 354
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 334
BseMI GCAATG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 213, 321
BseRI GAGGAG 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 196
BshTI ACCGGT 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 196
BsiSI CCGG 1 cut(s) 192
Bsp19I CCATGG 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 354
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 2 cut(s) 213, 321
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 202
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 334
BstMCI CGRYCG 1 cut(s) 196
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 206
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 290
CspAI ACCGGT 1 cut(s) 191
CviAII CATG 2 cut(s) 97, 170
CviQI GTAC 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 100, 173
FaiI YATR 4 cut(s) 98, 171, 218, 255
FatI CATG 2 cut(s) 96, 169
FokI GGATG 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 134
HapII CCGG 1 cut(s) 192
Hin1II CATG 2 cut(s) 100, 173
HinfI GANTC 3 cut(s) 101, 160, 166
HpaII CCGG 1 cut(s) 192
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 3 cut(s) 123, 165, 355
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 157, 347
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 2 cut(s) 100, 173
LpnPI CCDG 6 cut(s) 137, 164, 172, 194, 205, 302
LweI GCATC 1 cut(s) 334
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 173
MboII GAAGA 3 cut(s) 140, 146, 269
MluCI AATT 1 cut(s) 144
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 1 cut(s) 319
MseI TTAA 1 cut(s) 370
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
NcoI CCATGG 1 cut(s) 96
NlaIII CATG 2 cut(s) 100, 173
NmuCI GTSAC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 101, 160
PinAI ACCGGT 1 cut(s) 191
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspPI GGNCC 1 cut(s) 189
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 370
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 152
SetI ASST 3 cut(s) 156, 241, 247
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 184
SinI GGWCC 1 cut(s) 189
Sse9I AATT 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 1 cut(s) 241
TasI AATT 1 cut(s) 144
TfiI GAWTC 2 cut(s) 101, 160
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 259, 270
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.