RchiOBHm_Chr6g0244421

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
494706 .. 495364
659 bp
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UTR
Exon/CDS
Intron
PRQ21906

Sequence Viewer

Length: 219 bp
ATGGAGAGAATTGATGAATCCAAAATCTCATTTGAGAGATTTAATAAGATAACATTCTCATCAATAGAGAGTGAAAGGAGATCAGCAACTACCCAGGAATCCCTTGTCAAACTCACTCTTAAGGAAGATGAAGAACCGATAACTCTCCAGGTGCAGAATCAGAATCATGGTGACATCTACACAGGACCGGTCGTACCGTATCACTTGGAATTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.43

Weight (kDa)

4.88

Isoelectric Point (pI)

60.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 195
AflII CTTAAG 1 cut(s) 119
AgeI ACCGGT 1 cut(s) 187
AjnI CCWGG 2 cut(s) 93, 147
AsiGI ACCGGT 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 185
BciT130I CCWGG 2 cut(s) 95, 149
BfrI CTTAAG 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 95, 149
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmrFI CCNGG 2 cut(s) 95, 149
BpmI CTGGAG 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 187
BseBI CCWGG 2 cut(s) 95, 149
BseDI CCNNGG 1 cut(s) 93
BsgI GTGCAG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 192
BshTI ACCGGT 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 188
Bsp143I GATC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 80
Bst2UI CCWGG 2 cut(s) 95, 149
Bst4CI ACNGT 1 cut(s) 198
BstAFI CTTAAG 1 cut(s) 119
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstMCI CGRYCG 1 cut(s) 192
BstNI CCWGG 2 cut(s) 95, 149
BstSCI CCNGG 2 cut(s) 93, 147
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 194
CspAI ACCGGT 1 cut(s) 187
CviAII CATG 1 cut(s) 167
CviQI GTAC 1 cut(s) 194
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 93, 147
FaeI CATG 1 cut(s) 170
FaiI YATR 2 cut(s) 168, 214
FatI CATG 1 cut(s) 166
GsuI CTGGAG 1 cut(s) 131
HapII CCGG 1 cut(s) 188
Hin1II CATG 1 cut(s) 170
HinfI GANTC 4 cut(s) 17, 98, 157, 163
HpaII CCGG 1 cut(s) 188
HphI GGTGA 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 162
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 154
Hsp92II CATG 1 cut(s) 170
Kzo9I GATC 1 cut(s) 80
LpnPI CCDG 6 cut(s) 80, 107, 134, 161, 168, 201
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MboII GAAGA 2 cut(s) 137, 143
MluCI AATT 2 cut(s) 9, 209
MseI TTAA 2 cut(s) 42, 120
MspCI CTTAAG 1 cut(s) 119
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 95, 149
MvaI CCWGG 2 cut(s) 95, 149
NdeII GATC 1 cut(s) 80
NlaIII CATG 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 170
PfeI GAWTC 4 cut(s) 17, 98, 157, 163
PinAI ACCGGT 1 cut(s) 187
Psp6I CCWGG 2 cut(s) 93, 147
PspGI CCWGG 2 cut(s) 93, 147
PspPI GGNCC 1 cut(s) 185
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SaqAI TTAA 2 cut(s) 42, 120
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 185
ScrFI CCNGG 2 cut(s) 95, 149
SetI ASST 1 cut(s) 153
SgeI CNNG 8 cut(s) 106, 107, 116, 160, 161, 179, 195, 200
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 9, 209
StyD4I CCNGG 2 cut(s) 93, 147
TaaI ACNGT 1 cut(s) 198
TasI AATT 2 cut(s) 9, 209
TfiI GAWTC 4 cut(s) 17, 98, 157, 163
Tru1I TTAA 2 cut(s) 42, 120
Tru9I TTAA 2 cut(s) 42, 120
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 30, 144
Vha464I CTTAAG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.