RchiOBHm_Chr6g0244451

Small ubiquitin-related modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011425
Physical Location & Seq
Reverse (-)
525783 .. 526154
372 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21909

Sequence Viewer

Length: 372 bp
ATGGAGAGATTTGGTACATCCAAAATCTCATTAGTGGAGAGATTTAGTAAGATAACATTCTCATCAATAGAGAGTGAAAAGAGATTATCAACCACCCTGGAATCCCTTGTCAAACTCACTCTTAAGGAACATGAAGGACCGATAACTCTCCAGGTGCAGAATCAGAATCATGGTGACATCTACTACAGGACCGGTCGCACTGTATCACTTGGAAATATATTGAAAGATTACTGTGAACGTAAAGGTTTGGTCTATGAAGAAACGCGTTTCATCTACGATGGAAAAAGGGTATGCTCAACTCACACCCCACAACAACTGGAAATGGAGGATGAATTTGTTATTGATGCAATGTCCGAGCAGATTGGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

123

Amino Acids

14.16

Weight (kDa)

5.64

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 48 - 117 2.9e-10 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 265
AcsI RAATTY 1 cut(s) 332
AfaI GTAC 1 cut(s) 16
AflII CTTAAG 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 263
AgeI ACCGGT 1 cut(s) 191
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 2 cut(s) 96, 150
ApoI RAATTY 1 cut(s) 332
AsiGI ACCGGT 1 cut(s) 191
AspS9I GGNCC 2 cut(s) 137, 189
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 2 cut(s) 137, 189
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 2 cut(s) 98, 152
BfmI CTRYAG 1 cut(s) 184
BfrI CTTAAG 1 cut(s) 122
Bme1390I CCNGG 2 cut(s) 98, 152
Bme18I GGWCC 2 cut(s) 137, 189
BmgT120I GGNCC 2 cut(s) 137, 189
BmrFI CCNGG 2 cut(s) 98, 152
BmsI GCATC 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 354
BseBI CCWGG 2 cut(s) 98, 152
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 17, 334
BseMI GCAATG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 321
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 265
Bsh1285I CGRYCG 1 cut(s) 196
BshTI ACCGGT 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 196
BsiSI CCGG 1 cut(s) 192
BspFNI CGCG 1 cut(s) 265
BspTI CTTAAG 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 354
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 1 cut(s) 321
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 96
Bst2UI CCWGG 2 cut(s) 98, 152
Bst4CI ACNGT 2 cut(s) 202, 233
BstAFI CTTAAG 1 cut(s) 122
BstF5I GGATG 2 cut(s) 17, 334
BstFNI CGCG 1 cut(s) 265
BstMCI CGRYCG 1 cut(s) 196
BstNI CCWGG 2 cut(s) 98, 152
BstSCI CCNGG 2 cut(s) 96, 150
BstSFI CTRYAG 1 cut(s) 184
BstUI CGCG 1 cut(s) 265
BtsCI GGATG 2 cut(s) 17, 334
BtsIMutI CAGTG 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 137, 189
Csp6I GTAC 1 cut(s) 15
CspAI ACCGGT 1 cut(s) 191
CviAII CATG 2 cut(s) 131, 170
CviQI GTAC 1 cut(s) 15
Eco47I GGWCC 2 cut(s) 137, 189
EcoRII CCWGG 2 cut(s) 96, 150
FaeI CATG 2 cut(s) 134, 173
FaiI YATR 5 cut(s) 132, 171, 218, 255, 292
FatI CATG 2 cut(s) 130, 169
FokI GGATG 2 cut(s) 4, 341
GsuI CTGGAG 1 cut(s) 134
HapII CCGG 1 cut(s) 192
Hin1II CATG 2 cut(s) 134, 173
HinfI GANTC 3 cut(s) 101, 160, 166
HpaII CCGG 1 cut(s) 192
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 2 cut(s) 165, 355
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 2 cut(s) 202, 233
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 157, 347
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 2 cut(s) 134, 173
LpnPI CCDG 7 cut(s) 83, 110, 137, 164, 172, 205, 302
LweI GCATC 1 cut(s) 334
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 173
MboII GAAGA 1 cut(s) 269
MluCI AATT 1 cut(s) 332
MluI ACGCGT 1 cut(s) 263
MnlI CCTC 1 cut(s) 319
MseI TTAA 2 cut(s) 123, 370
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 98, 152
MvaI CCWGG 2 cut(s) 98, 152
MvnI CGCG 1 cut(s) 265
NlaIII CATG 2 cut(s) 134, 173
NmuCI GTSAC 1 cut(s) 173
PfeI GAWTC 3 cut(s) 101, 160, 166
PinAI ACCGGT 1 cut(s) 191
Psp6I CCWGG 2 cut(s) 96, 150
PspGI CCWGG 2 cut(s) 96, 150
PspPI GGNCC 2 cut(s) 137, 189
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 123, 370
Sau96I GGNCC 2 cut(s) 137, 189
ScrFI CCNGG 2 cut(s) 98, 152
SetI ASST 3 cut(s) 156, 241, 247
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 184
SinI GGWCC 2 cut(s) 137, 189
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 332
StyD4I CCNGG 2 cut(s) 96, 150
TaaI ACNGT 2 cut(s) 202, 233
TaiI ACGT 1 cut(s) 241
TaqII GACCGA 1 cut(s) 154
TasI AATT 1 cut(s) 332
TfiI GAWTC 3 cut(s) 101, 160, 166
Tru1I TTAA 2 cut(s) 123, 370
Tru9I TTAA 2 cut(s) 123, 370
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 4 cut(s) 147, 259, 270, 345
TspRI CASTG 1 cut(s) 205
Vha464I CTTAAG 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 137, 189
XapI RAATTY 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.