Rh3DG014000

Small ubiquitin-related modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011425
Physical Location & Seq
Reverse (-)
833733 .. 834128
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG014000.1

Sequence Viewer

Length: 396 bp
ATGAGTACTACAAACCCAAAAGAAGAACCGATAACGGACGATGAATTCTATCACATACCCACACTGACACAGGAAACCCTAGTTAGGGTTTCTCTTCCGAAAGAAGAAGATCCTACGATTCTTCTCCGAGTTCAGAGTCAAGAACATCCTGACATATCCTACATGACCAGTCCTAGTATGCCGCTCAGACATGTGTTGCGAGATTACTGCAGACGCACATATCTCGACTTCGAAACGGTACGGTTTTCCTTTGAGGGAAAAAGGGTACAGGAGAGTCATATTCCAGAACATTTTGAAATGGAGGATGGCGATGTCATCGACGCATTTACGACTCAGATAGGTGGTGCCATATATGTTCTTGATTTGGAAAAATTTAGTAACTTAGCTAGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

131

Amino Acids

15.22

Weight (kDa)

4.67

Isoelectric Point (pI)

65.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 42 - 108 1.3e-09 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 344
AccBSI CCGCTC 1 cut(s) 184
AciI CCGC 1 cut(s) 182
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 2 cut(s) 44, 371
AfaI GTAC 3 cut(s) 7, 240, 267
AfiI CCNNNNNNNGG 2 cut(s) 84, 85
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 1 cut(s) 296
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
AlwI GGATC 1 cut(s) 104
ApoI RAATTY 2 cut(s) 44, 371
AsuII TTCGAA 1 cut(s) 231
BanI GGYRCC 1 cut(s) 344
BccI CCATC 1 cut(s) 299
BcgI CGANNNNNNTGC 4 cut(s) 189, 205, 223, 239
BfaI CTAG 3 cut(s) 80, 174, 387
BfmI CTRYAG 1 cut(s) 208
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
BmcAI AGTACT 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 346
Bpu14I TTCGAA 1 cut(s) 231
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 85
Bse1I ACTGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 145, 310
BseLI CCNNNNNNNGG 2 cut(s) 84, 85
BseMII CTCAG 2 cut(s) 199, 347
BseNI ACTGG 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 84, 85
Bsp119I TTCGAA 1 cut(s) 231
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 198, 346
BspLI GGNNCC 1 cut(s) 346
BspMAI CTGCAG 1 cut(s) 212
BspPI GGATC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 184
BsrI ACTGG 1 cut(s) 168
BssMI GATC 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 238, 243
Bst6I CTCTTC 1 cut(s) 99
BstBI TTCGAA 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 185, 333, 382
BstF5I GGATG 2 cut(s) 145, 310
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 324
BtsCI GGATG 2 cut(s) 145, 310
BtsIMutI CAGTG 1 cut(s) 62
CseI GACGC 2 cut(s) 222, 329
Csp6I GTAC 3 cut(s) 6, 239, 266
CviAII CATG 2 cut(s) 163, 191
CviJI RGCY 1 cut(s) 386
CviKI_1 RGCY 1 cut(s) 386
CviQI GTAC 3 cut(s) 6, 239, 266
DdeI CTNAG 3 cut(s) 185, 333, 382
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EcoRI GAATTC 1 cut(s) 44
FaeI CATG 2 cut(s) 166, 194
FatI CATG 2 cut(s) 162, 190
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 2 cut(s) 132, 317
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 3 cut(s) 80, 174, 387
GluI GCNGC 1 cut(s) 182
HgaI GACGC 2 cut(s) 222, 329
Hin1II CATG 2 cut(s) 166, 194
HinfI GANTC 4 cut(s) 118, 136, 274, 331
Hpy188I TCNGA 5 cut(s) 99, 128, 135, 188, 336
Hpy188III TCNNGA 5 cut(s) 140, 149, 224, 284, 359
Hpy99I CGWCG 1 cut(s) 323
HpyCH4III ACNGT 2 cut(s) 238, 243
HpyCH4V TGCA 1 cut(s) 210
HpyF3I CTNAG 3 cut(s) 185, 333, 382
Hsp92II CATG 2 cut(s) 166, 194
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 56, 162, 181, 254, 297
MaeI CTAG 3 cut(s) 80, 174, 387
MaeIII GTNAC 2 cut(s) 377, 389
MalI GATC 1 cut(s) 111
MbiI CCGCTC 1 cut(s) 184
MboI GATC 1 cut(s) 109
MboII GAAGA 5 cut(s) 35, 86, 113, 116, 119
MflI RGATCY 1 cut(s) 109
MluCI AATT 2 cut(s) 44, 371
MlyI GAGTC 3 cut(s) 145, 283, 325
MnlI CCTC 2 cut(s) 247, 295
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 166, 194
NlaIV GGNNCC 1 cut(s) 346
NspI RCATGY 1 cut(s) 194
NspV TTCGAA 1 cut(s) 231
PciI ACATGT 1 cut(s) 190
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 183
PleI GAGTC 3 cut(s) 144, 282, 325
PpsI GAGTC 3 cut(s) 144, 282, 325
PscI ACATGT 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 346
PstI CTGCAG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 3 cut(s) 7, 240, 267
RsaNI GTAC 3 cut(s) 6, 239, 266
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 1 cut(s) 109
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 3 cut(s) 145, 283, 325
SetI ASST 2 cut(s) 343, 388
SfcI CTRYAG 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 231
Sse9I AATT 2 cut(s) 44, 371
SsiI CCGC 1 cut(s) 182
SspMI CTAG 3 cut(s) 80, 174, 387
TaaI ACNGT 2 cut(s) 238, 243
TaqI TCGA 3 cut(s) 225, 231, 318
TasI AATT 2 cut(s) 44, 371
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 69
XapI RAATTY 2 cut(s) 44, 371
XceI RCATGY 1 cut(s) 194
XspI CTAG 3 cut(s) 80, 174, 387
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.