Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009444

Physical Location & Seq

Genomic Coordinates Forward (+)

3278857 .. 3283816

Gene Structure 4960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGTCGTCTGCAAATGCAAGAAGGCTACCAAGCTTTATTGTTTCGTGCACAAGGTTCCGGTGTGTGGAGAATGCATATGTGCTCCGGAGCATCAAATATGTGTGATTCGTACATACTCAGAATGGGTGATAGATGGAGAGTACGATTGGCCTCCTAAATGCTGCCTATGTCGGGTTGAGCTCGATGAGGGGACGGGCTCTCAGACGACACGGCTTGGTTGCTTACATGTTATACATACAAGTTGCCTGGTGTCACATATCAAGAGCTTTCCTTCGCATACTGCCCCAGCTGGATATGTTTGTCCTGGATGTTCAACATCGATATGGCCCCCCAAGAATGTGAAAGATTCAGCATCCCGCCTTCATTCAAAGTTGAAGGAAGCTATCATGCAGACTGGCTTGGAAAAGAACTTGTTTGGAAATCATCCAGTTTCAATGTCAGAGTCCCGTAGTCCGCCGCCTGCATTTTCCTCAGATGCAGGGCGGGAGAATATTGCAACTTCATCTTCATTAGCAGAAGATGAAGGGTCTGCTATACTTCAAGTGACAGACATAGTGGAGATAGAAGGCACTAGTTCAGCTGGGAATTTTATAAAAAGCACAAGTCCAGTTGGTCCTGGTGCTACAACACGAAAGGGTGCATTCCAGGTTGAGCGGCAAAACTCAGAAATGTCATATTATGCGGACGATGAAGACGGGAATCGTAAAAAGTATTCACGGAGGGGCCCATTCCGACACAAGTTTCTTAGAGCATTGCTTCCTTTCTGGGGAAGTTCATTGCCAATTCTGCCAGTGACTGCGCCCCAGCGGAAAGATGGATCAATTGCAACAGATGCACCAGAAGGTCGTCCAAGACATCAAAAATCATCGAGAATGGATCCAAGAAAAATACTTCTTGTCATAGCAATCATGGCATGCATGGCAACTATGGGTATTTTGTATTACAGATTAGTGCAACGGGGTTTTGGCGAGGAGACTCCTGATGGTGAGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

36.51

Weight (kDa)

8.45

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box_ZFPL1	PF25993	1 - 45	3.2e-21	ZFPL1-like, B-box zinc-binding domain
U-box_ZFPL1	PF25998	53 - 129	2.9e-40	ZFPL1-like, U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14835 AT2G14835
fragaria_vesca	FvH4_2g04180
malus_domestica	MD05G1098600.v1.1 MD10G1104500.v1.1
prunus_persica	Prupe.8G143400_v2.0.a1 Prupe.8G143400_v2.0.a1
pyrus_communis	pycom10g09000
rosa_chinensis	RchiOBHm_Chr6g0253531
rosa_laevigata	RLG00000015003
rosa_multiflora	Rmu_co8219316.1_g000001 Rmu_sc0020812.1_g000003 Rmu_ssc0000079.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211800
rosa_rugosa	Rorug05G0544800 Rorug05G0544900 Rorug05G0545000
rosa_samantha	Rh6AG060000 Rh6BG054000 Rh6CG053700 Rh6DG051300
rosa_wichuraiana	Rw6G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	593
AccBSI	CCGCTC	1 cut(s)	655
AccIII	TCCGGA	1 cut(s)	85
AciI	CCGC	7 cut(s)	358, 455, 458, 484, 655, 683, 808
AclWI	GGATC	3 cut(s)	826, 872, 885
AcsI	RAATTY	1 cut(s)	586
AfaI	GTAC	2 cut(s)	112, 143
AfiI	CCNNNNNNNGG	3 cut(s)	65, 172, 767
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	5 cut(s)	315, 369, 376, 435, 542
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	4 cut(s)	246, 304, 616, 645
AluBI	AGCT	6 cut(s)	34, 181, 267, 290, 383, 581
AluI	AGCT	6 cut(s)	34, 181, 267, 290, 383, 581
Alw21I	GWGCWC	3 cut(s)	51, 85, 183
Alw26I	GTCTC	1 cut(s)	968
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	3 cut(s)	826, 872, 885
AlwNI	CAGNNNCTG	1 cut(s)	797
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	3 cut(s)	149, 326, 724
ApaI	GGGCCC	1 cut(s)	728
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	162, 991
ApoI	RAATTY	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	4 cut(s)	327, 614, 724, 725
AsuHPI	GGTGA	2 cut(s)	139, 998
AvaII	GGWCC	1 cut(s)	614
BaeGI	GKGCMC	2 cut(s)	51, 728
BamHI	GGATCC	1 cut(s)	877
BanII	GRGCYC	3 cut(s)	183, 200, 728
BbsI	GAAGAC	1 cut(s)	699
Bbv12I	GWGCWC	3 cut(s)	51, 85, 183
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	3 cut(s)	128, 809, 977
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	4 cut(s)	248, 306, 618, 647
BcoDI	GTCTC	1 cut(s)	968
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	1 cut(s)	573
BisI	GCNGC	4 cut(s)	163, 458, 656, 992
BlsI	GCNGC	4 cut(s)	164, 459, 657, 993
Bme1390I	CCNGG	4 cut(s)	248, 306, 618, 647
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	4 cut(s)	327, 614, 724, 725
BmiI	GGNNCC	5 cut(s)	57, 329, 725, 726, 879
BmrFI	CCNGG	4 cut(s)	248, 306, 618, 647
BmsI	GCATC	4 cut(s)	100, 362, 466, 823
BpiI	GAAGAC	1 cut(s)	699
Bsa29I	ATCGAT	1 cut(s)	320
BsaWI	WCCGGW	2 cut(s)	58, 85
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 172, 767
Bse1I	ACTGG	4 cut(s)	400, 428, 608, 791
Bse3DI	GCAATG	2 cut(s)	752, 776
BseAI	TCCGGA	1 cut(s)	85
BseBI	CCWGG	4 cut(s)	248, 306, 618, 647
BseCI	ATCGAT	1 cut(s)	320
BseGI	GGATG	3 cut(s)	314, 353, 424
BseLI	CCNNNNNNNGG	3 cut(s)	65, 172, 767
BseMI	GCAATG	2 cut(s)	752, 776
BseMII	CTCAG	4 cut(s)	132, 215, 486, 678
BseNI	ACTGG	4 cut(s)	400, 428, 608, 791
BseRI	GAGGAG	1 cut(s)	986
BseSI	GKGCMC	2 cut(s)	51, 728
BseXI	GCAGC	1 cut(s)	149
BseYI	CCCAGC	3 cut(s)	286, 581, 804
BshFI	GGCC	3 cut(s)	151, 328, 726
BshVI	ATCGAT	1 cut(s)	320
BsiHKAI	GWGCWC	3 cut(s)	51, 85, 183
BsiSI	CCGG	2 cut(s)	59, 86
BslFI	GGGAC	2 cut(s)	205, 430
BslI	CCNNNNNNNGG	3 cut(s)	65, 172, 767
BsmAI	GTCTC	1 cut(s)	968
BsmFI	GGGAC	2 cut(s)	205, 430
BsmI	GAATGC	2 cut(s)	77, 641
BsnI	GGCC	3 cut(s)	151, 328, 726
Bsp120I	GGGCCC	1 cut(s)	724
Bsp1286I	GDGCHC	5 cut(s)	51, 85, 183, 200, 728
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	818, 877
BspACI	CCGC	7 cut(s)	358, 455, 458, 484, 655, 683, 808
BspANI	GGCC	3 cut(s)	151, 328, 726
BspCNI	CTCAG	4 cut(s)	131, 214, 485, 677
BspDI	ATCGAT	1 cut(s)	320
BspEI	TCCGGA	1 cut(s)	85
BspLI	GGNNCC	5 cut(s)	57, 329, 725, 726, 879
BspPI	GGATC	3 cut(s)	826, 872, 885
BsrBI	CCGCTC	1 cut(s)	655
BsrDI	GCAATG	2 cut(s)	752, 776
BsrI	ACTGG	4 cut(s)	400, 428, 608, 791
BssMI	GATC	2 cut(s)	818, 877
Bst2UI	CCWGG	4 cut(s)	248, 306, 618, 647
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstC8I	GCNNGC	2 cut(s)	462, 916
BstDEI	CTNAG	5 cut(s)	118, 201, 472, 664, 746
BstF5I	GGATG	3 cut(s)	314, 353, 424
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	2 cut(s)	821, 880
BstMAI	GTCTC	1 cut(s)	968
BstMBI	GATC	2 cut(s)	818, 877
BstMWI	GCNNNNNNNGC	4 cut(s)	787, 833, 911, 920
BstNI	CCWGG	4 cut(s)	248, 306, 618, 647
BstNSI	RCATGY	2 cut(s)	230, 918
BstSCI	CCNGG	4 cut(s)	246, 304, 616, 645
BstSLI	GKGCMC	2 cut(s)	51, 728
BstV1I	GCAGC	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	699
BstX2I	RGATCY	1 cut(s)	877
BstYI	RGATCY	1 cut(s)	877
Bsu15I	ATCGAT	1 cut(s)	320
BsuRI	GGCC	3 cut(s)	151, 328, 726
BsuTUI	ATCGAT	1 cut(s)	320
BtsCI	GGATG	3 cut(s)	314, 353, 424
BtsIMutI	CAGTG	1 cut(s)	798
Cac8I	GCNNGC	2 cut(s)	462, 916
CaiI	CAGNNNCTG	1 cut(s)	797
CfoI	GCGC	1 cut(s)	802
Cfr13I	GGNCC	4 cut(s)	327, 614, 724, 725
ClaI	ATCGAT	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	111, 142
CviAII	CATG	5 cut(s)	227, 388, 910, 915, 919
CviQI	GTAC	2 cut(s)	111, 142
DdeI	CTNAG	5 cut(s)	118, 201, 472, 664, 746
DpnI	GATC	2 cut(s)	820, 879
DpnII	GATC	2 cut(s)	818, 877
EciI	GGCGGA	1 cut(s)	444
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	3 cut(s)	183, 200, 728
Eco47I	GGWCC	1 cut(s)	614
Eco53kI	GAGCTC	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	724
EcoRII	CCWGG	4 cut(s)	246, 304, 616, 645
EcoT22I	ATGCAT	2 cut(s)	77, 920
EcoT38I	GRGCYC	3 cut(s)	183, 200, 728
FaeI	CATG	5 cut(s)	230, 391, 913, 918, 922
FaqI	GGGAC	2 cut(s)	205, 430
FatI	CATG	5 cut(s)	226, 387, 909, 914, 918
FauI	CCCGC	2 cut(s)	365, 477
FauNDI	CATATG	1 cut(s)	77
Fnu4HI	GCNGC	4 cut(s)	163, 458, 656, 992
FokI	GGATG	3 cut(s)	321, 340, 411
FriOI	GRGCYC	3 cut(s)	183, 200, 728
Fsp4HI	GCNGC	4 cut(s)	163, 458, 656, 992
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	4 cut(s)	163, 458, 656, 992
GsaI	CCCAGC	3 cut(s)	290, 585, 808
HaeIII	GGCC	3 cut(s)	151, 328, 726
HapII	CCGG	2 cut(s)	59, 86
HhaI	GCGC	1 cut(s)	802
Hin1II	CATG	5 cut(s)	230, 391, 913, 918, 922
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	5 cut(s)	106, 347, 443, 700, 976
HpaII	CCGG	2 cut(s)	59, 86
HphI	GGTGA	2 cut(s)	139, 998
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	6 cut(s)	121, 204, 442, 475, 667, 734
Hpy188III	TCNNGA	4 cut(s)	86, 262, 870, 980
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	7 cut(s)	16, 282, 370, 371, 518, 560, 836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	787, 833, 911, 920
HpyF3I	CTNAG	5 cut(s)	118, 201, 472, 664, 746
Hsp92II	CATG	5 cut(s)	230, 391, 913, 918, 922
HspAI	GCGC	1 cut(s)	800
Kpn2I	TCCGGA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	818, 877
LmnI	GCTCC	2 cut(s)	88, 88
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	4 cut(s)	100, 362, 466, 823
MaeI	CTAG	1 cut(s)	573
MaeIII	GTNAC	3 cut(s)	252, 544, 793
MalI	GATC	2 cut(s)	820, 879
MbiI	CCGCTC	1 cut(s)	655
MboI	GATC	2 cut(s)	818, 877
MboII	GAAGA	3 cut(s)	498, 530, 704
MfeI	CAATTG	1 cut(s)	822
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	5 cut(s)	51, 85, 183, 200, 728
MluCI	AATT	3 cut(s)	586, 783, 822
MlyI	GAGTC	2 cut(s)	452, 970
MmeI	TCCRAC	1 cut(s)	757
MnlI	CCTC	5 cut(s)	162, 181, 481, 714, 964
Mph1103I	ATGCAT	2 cut(s)	77, 920
MroI	TCCGGA	1 cut(s)	85
MslI	CAYNNNNRTG	1 cut(s)	322
MspA1I	CMGCKG	3 cut(s)	290, 581, 808
MspI	CCGG	2 cut(s)	59, 86
MspR9I	CCNGG	4 cut(s)	248, 306, 618, 647
MunI	CAATTG	1 cut(s)	822
Mva1269I	GAATGC	2 cut(s)	77, 641
MvaI	CCWGG	4 cut(s)	248, 306, 618, 647
MwoI	GCNNNNNNNGC	4 cut(s)	787, 833, 911, 920
NdeI	CATATG	1 cut(s)	77
NdeII	GATC	2 cut(s)	818, 877
NlaIII	CATG	5 cut(s)	230, 391, 913, 918, 922
NlaIV	GGNNCC	5 cut(s)	57, 329, 725, 726, 879
NmuCI	GTSAC	3 cut(s)	252, 544, 793
NsiI	ATGCAT	2 cut(s)	77, 920
NspI	RCATGY	2 cut(s)	230, 918
PaeI	GCATGC	1 cut(s)	918
PciI	ACATGT	1 cut(s)	226
PctI	GAATGC	2 cut(s)	77, 641
PfeI	GAWTC	3 cut(s)	106, 347, 700
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	4 cut(s)	164, 459, 657, 993
PleI	GAGTC	2 cut(s)	451, 970
PpsI	GAGTC	2 cut(s)	451, 970
PscI	ACATGT	1 cut(s)	226
PsiI	TTATAA	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	4 cut(s)	246, 304, 616, 645
PspFI	CCCAGC	3 cut(s)	286, 581, 804
PspGI	CCWGG	4 cut(s)	246, 304, 616, 645
PspN4I	GGNNCC	5 cut(s)	57, 329, 725, 726, 879
PspOMI	GGGCCC	1 cut(s)	724
PspPI	GGNCC	4 cut(s)	327, 614, 724, 725
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	1 cut(s)	877
PvuII	CAGCTG	2 cut(s)	290, 581
RsaI	GTAC	2 cut(s)	112, 143
RsaNI	GTAC	2 cut(s)	111, 142
RseI	CAYNNNNRTG	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	183
SatI	GCNGC	4 cut(s)	163, 458, 656, 992
Sau3AI	GATC	2 cut(s)	818, 877
Sau96I	GGNCC	4 cut(s)	327, 614, 724, 725
SchI	GAGTC	2 cut(s)	452, 970
ScrFI	CCNGG	4 cut(s)	248, 306, 618, 647
SduI	GDGCHC	5 cut(s)	51, 85, 183, 200, 728
SetI	ASST	9 cut(s)	36, 57, 183, 269, 292, 385, 583, 651, 847
SfaNI	GCATC	4 cut(s)	100, 362, 466, 823
SinI	GGWCC	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	322
SpeI	ACTAGT	1 cut(s)	572
SphI	GCATGC	1 cut(s)	918
Sse9I	AATT	3 cut(s)	586, 783, 822
SsiI	CCGC	7 cut(s)	358, 455, 458, 484, 655, 683, 808
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	1 cut(s)	573
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	4 cut(s)	246, 304, 616, 645
TaqI	TCGA	3 cut(s)	183, 320, 869
TasI	AATT	3 cut(s)	586, 783, 822
TauI	GCSGC	2 cut(s)	460, 658
TfiI	GAWTC	3 cut(s)	106, 347, 700
TscAI	CASTG	1 cut(s)	798
TseFI	GTSAC	3 cut(s)	252, 544, 793
TseI	GCWGC	2 cut(s)	162, 991
Tsp45I	GTSAC	3 cut(s)	252, 544, 793
TspDTI	ATGAA	6 cut(s)	353, 492, 498, 537, 705, 765
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	1 cut(s)	798
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	1 cut(s)	586
XceI	RCATGY	2 cut(s)	230, 918
XcmI	CCANNNNNNNNNTGG	1 cut(s)	812
XspI	CTAG	1 cut(s)	573
Zsp2I	ATGCAT	2 cut(s)	77, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.