Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009444

Physical Location & Seq

Genomic Coordinates Forward (+)

11877596 .. 11882780

Gene Structure 5185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g09000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGTGGTTTGCAAATGCCGCAAGGCTACTAAGCTGTATTGTTTCGTGCACAAGGTTCCAGTTTGCGGAGAATGCATCTCTTCTCCCGAGCATCAAATATGCGTGATTCGTACTTACTCAGAATGGGTAATAGATGGAGAGTATGATTGGCCTCCGAAATGCTGCCTCTGTCATGTTGAGCTGGATGAGGGGACTGGCCCCCAAACGACTCGGCTGGGTTGCTTGCATGTAATACATACAAGTTGCCTGGTTTCACATATCAAGAGTTTCCCTTTGCATACTGCACCAGCGGGATATGTTTGTCCTACATGTTCCACACCGATGTGGCCTCCCAAGAATGTGAAAGATTCGGCATCCTGCTTTCACTCAAAGTTGAAGGAAGCTATCATGCAGACTGGCTTGGAAAAGAACTTGTTTGGAAATCATCCAGTTTCATTGTCGACAGAATCTCGTAGTCCTCCTCCTGCATTTTCGTCTGATCCACTTGTTAGTGCATCTTTGAATGGAGGAAGGGACGATAATGCTAGCTCATCCGCAGGAAAAGATAGACCTAACGTAATTGATTTCGCAGCTACAACTGGAGCAGGACCTTCTATACATCCAGTGGCAGACATAGTGGAGATAGGAAGTCCTAGTTCGGCAGGGAATTATGTGCAAAGCACGAGTCCGCCTGGTGCTACAACACGAAAGGGTGCATTGCAAGTTGAGCGACAGAACTCTGAAATTTCATATTATGCAGACGATGAAGATGGGAATCGTAAAAAGTATTCACGTAGGGGCCCATTCCGACATAAGTTTCTTAGAGCATTGCTTCCATTCTGGTCAAGTGCGTTGCCAACTCTACCAGTGACTGCACCCCAGCGAAAAGATGGATCAATTGAAAATGATGTCCCAGAAGGTCGTCCCCGACATAAAAAATCATCAAGAATGTCAGATCCAAGAAAAATCCTACTTGTTATAGCAATCATGGCATGCATGGCGACTATGGTTATTTTGTATTACAGATTAGTGCAACGGGGTCTTGGTGAGGAGATGCCTGAAGACGAGCAGCAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

38.64

Weight (kDa)

8.3

Isoelectric Point (pI)

60.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14835 AT2G14835
fragaria_vesca	FvH4_2g04180
malus_domestica	MD05G1098600.v1.1 MD10G1104500.v1.1
prunus_persica	Prupe.8G143400_v2.0.a1 Prupe.8G143400_v2.0.a1
pyrus_communis	pycom10g09000
rosa_chinensis	RchiOBHm_Chr6g0253531
rosa_laevigata	RLG00000015003
rosa_multiflora	Rmu_co8219316.1_g000001 Rmu_sc0020812.1_g000003 Rmu_ssc0000079.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211800
rosa_rugosa	Rorug05G0544800 Rorug05G0544900 Rorug05G0545000
rosa_samantha	Rh6AG060000 Rh6BG054000 Rh6CG053700 Rh6DG051300
rosa_wichuraiana	Rw6G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	440
AciI	CCGC	5 cut(s)	19, 66, 290, 534, 668
AclWI	GGATC	3 cut(s)	473, 880, 929
AcsI	RAATTY	1 cut(s)	723
AcuI	CTGAAG	1 cut(s)	1059
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	3 cut(s)	376, 502, 881
AjnI	CCWGG	2 cut(s)	246, 670
AleI	CACNNNNGTG	1 cut(s)	322
AluBI	AGCT	5 cut(s)	34, 181, 383, 528, 572
AluI	AGCT	5 cut(s)	34, 181, 383, 528, 572
Alw21I	GWGCWC	1 cut(s)	51
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	3 cut(s)	473, 880, 929
AlwNI	CAGNNNCTG	1 cut(s)	851
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	4 cut(s)	149, 196, 326, 778
ApaI	GGGCCC	1 cut(s)	782
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	4 cut(s)	162, 569, 1048, 1051
ApoI	RAATTY	1 cut(s)	723
ArsI	GACNNNNNNTTYG	2 cut(s)	649, 681
AspS9I	GGNCC	4 cut(s)	197, 587, 778, 779
AsuHPI	GGTGA	1 cut(s)	1037
AsuNHI	GCTAGC	1 cut(s)	524
AvaI	CYCGRG	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	587
BaeGI	GKGCMC	2 cut(s)	51, 782
BanII	GRGCYC	1 cut(s)	782
BauI	CACGAG	1 cut(s)	661
BbsI	GAAGAC	1 cut(s)	1047
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	149, 581
BccI	CCATC	3 cut(s)	128, 743, 863
BciT130I	CCWGG	2 cut(s)	248, 672
BfaI	CTAG	2 cut(s)	525, 633
BisI	GCNGC	5 cut(s)	19, 163, 570, 1049, 1052
BlsI	GCNGC	5 cut(s)	20, 164, 571, 1050, 1053
Bme1390I	CCNGG	2 cut(s)	248, 672
Bme18I	GGWCC	1 cut(s)	587
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	4 cut(s)	197, 587, 778, 779
BmiI	GGNNCC	4 cut(s)	57, 199, 779, 780
BmrFI	CCNGG	2 cut(s)	248, 672
BmsI	GCATC	5 cut(s)	84, 100, 362, 503, 1023
BmtI	GCTAGC	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	1047
BpmI	CTGGAG	1 cut(s)	600
BsaAI	YACGTR	1 cut(s)	773
BsaBI	GATNNNNATC	1 cut(s)	753
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	7 cut(s)	59, 199, 400, 428, 583, 602, 845
Bse3DI	GCAATG	2 cut(s)	695, 806
Bse8I	GATNNNNATC	1 cut(s)	753
BseBI	CCWGG	2 cut(s)	248, 672
BseGI	GGATG	5 cut(s)	190, 353, 424, 530, 598
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	2 cut(s)	695, 806
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	7 cut(s)	59, 199, 400, 428, 583, 602, 845
BseRI	GAGGAG	2 cut(s)	450, 1043
BseSI	GKGCMC	2 cut(s)	51, 782
BseXI	GCAGC	2 cut(s)	149, 581
BseYI	CCCAGC	2 cut(s)	214, 858
BsgI	GTGCAG	2 cut(s)	267, 837
BshFI	GGCC	4 cut(s)	151, 198, 328, 780
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	86
BslFI	GGGAC	4 cut(s)	205, 527, 875, 888
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmFI	GGGAC	4 cut(s)	205, 527, 875, 888
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	4 cut(s)	151, 198, 328, 780
BsoBI	CYCGRG	1 cut(s)	86
Bsp120I	GGGCCC	1 cut(s)	778
Bsp1286I	GDGCHC	2 cut(s)	51, 782
Bsp143I	GATC	3 cut(s)	478, 872, 934
BspACI	CCGC	5 cut(s)	19, 66, 290, 534, 668
BspANI	GGCC	4 cut(s)	151, 198, 328, 780
BspCNI	CTCAG	1 cut(s)	131
BspLI	GGNNCC	4 cut(s)	57, 199, 779, 780
BspOI	GCTAGC	1 cut(s)	528
BspPI	GGATC	3 cut(s)	473, 880, 929
BsrDI	GCAATG	2 cut(s)	695, 806
BsrI	ACTGG	7 cut(s)	59, 199, 400, 428, 583, 602, 845
BssMI	GATC	3 cut(s)	478, 872, 934
BssSI	CACGAG	1 cut(s)	661
Bst2BI	CACGAG	1 cut(s)	661
Bst2UI	CCWGG	2 cut(s)	248, 672
Bst6I	CTCTTC	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	773
BstC8I	GCNNGC	3 cut(s)	224, 526, 973
BstDEI	CTNAG	3 cut(s)	30, 118, 800
BstF5I	GGATG	5 cut(s)	190, 353, 424, 530, 598
BstKTI	GATC	3 cut(s)	481, 875, 937
BstMBI	GATC	3 cut(s)	478, 872, 934
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 72, 706, 968, 977
BstNI	CCWGG	2 cut(s)	248, 672
BstNSI	RCATGY	3 cut(s)	230, 312, 975
BstSCI	CCNGG	2 cut(s)	246, 670
BstSLI	GKGCMC	2 cut(s)	51, 782
BstV1I	GCAGC	2 cut(s)	149, 581
BstV2I	GAAGAC	1 cut(s)	1047
BstX2I	RGATCY	1 cut(s)	934
BstYI	RGATCY	1 cut(s)	934
BsuRI	GGCC	4 cut(s)	151, 198, 328, 780
BtsCI	GGATG	5 cut(s)	190, 353, 424, 530, 598
BtsIMutI	CAGTG	2 cut(s)	609, 852
Cac8I	GCNNGC	3 cut(s)	224, 526, 973
CaiI	CAGNNNCTG	1 cut(s)	851
Cfr13I	GGNCC	4 cut(s)	197, 587, 778, 779
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	7 cut(s)	173, 227, 309, 388, 967, 972, 976
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	3 cut(s)	30, 118, 800
DpnI	GATC	3 cut(s)	480, 874, 936
DpnII	GATC	3 cut(s)	478, 872, 934
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
EciI	GGCGGA	1 cut(s)	657
Eco24I	GRGCYC	1 cut(s)	782
Eco47I	GGWCC	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	1059
Eco88I	CYCGRG	1 cut(s)	86
EcoO109I	RGGNCCY	2 cut(s)	587, 778
EcoRII	CCWGG	2 cut(s)	246, 670
EcoT22I	ATGCAT	2 cut(s)	77, 977
EcoT38I	GRGCYC	1 cut(s)	782
FaeI	CATG	7 cut(s)	176, 230, 312, 391, 970, 975, 979
FaqI	GGGAC	4 cut(s)	205, 527, 875, 888
FatI	CATG	7 cut(s)	172, 226, 308, 387, 966, 971, 975
FauI	CCCGC	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	5 cut(s)	19, 163, 570, 1049, 1052
FokI	GGATG	5 cut(s)	197, 340, 411, 517, 585
FriOI	GRGCYC	1 cut(s)	782
Fsp4HI	GCNGC	5 cut(s)	19, 163, 570, 1049, 1052
FspBI	CTAG	2 cut(s)	525, 633
GluI	GCNGC	5 cut(s)	19, 163, 570, 1049, 1052
GsaI	CCCAGC	2 cut(s)	218, 862
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	4 cut(s)	151, 198, 328, 780
Hin1II	CATG	7 cut(s)	176, 230, 312, 391, 970, 975, 979
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	6 cut(s)	106, 208, 347, 446, 664, 754
HphI	GGTGA	1 cut(s)	1037
Hpy166II	GTNNAC	2 cut(s)	49, 441
Hpy188I	TCNGA	6 cut(s)	121, 156, 478, 721, 788, 934
Hpy188III	TCNNGA	3 cut(s)	86, 262, 924
Hpy8I	GTNNAC	2 cut(s)	49, 441
HpyAV	CCTTC	4 cut(s)	370, 504, 600, 890
HpyCH4IV	ACGT	2 cut(s)	555, 772
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 72, 706, 968, 977
HpyF3I	CTNAG	3 cut(s)	30, 118, 800
HpySE526I	ACGT	2 cut(s)	555, 772
Hsp92II	CATG	7 cut(s)	176, 230, 312, 391, 970, 975, 979
Kzo9I	GATC	3 cut(s)	478, 872, 934
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	2 cut(s)	149, 581
LweI	GCATC	5 cut(s)	84, 100, 362, 503, 1023
MaeI	CTAG	2 cut(s)	525, 633
MaeII	ACGT	2 cut(s)	555, 772
MaeIII	GTNAC	1 cut(s)	847
MalI	GATC	3 cut(s)	480, 874, 936
MboI	GATC	3 cut(s)	478, 872, 934
MboII	GAAGA	3 cut(s)	72, 758, 1052
MfeI	CAATTG	1 cut(s)	876
MflI	RGATCY	1 cut(s)	934
MhlI	GDGCHC	2 cut(s)	51, 782
MluCI	AATT	4 cut(s)	558, 646, 723, 876
MlyI	GAGTC	2 cut(s)	202, 673
MmeI	TCCRAC	1 cut(s)	811
MnlI	CCTC	8 cut(s)	162, 176, 181, 339, 468, 471, 500, 1021
Mph1103I	ATGCAT	2 cut(s)	77, 977
MslI	CAYNNNNRTG	2 cut(s)	320, 322
MspA1I	CMGCKG	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	248, 672
MunI	CAATTG	1 cut(s)	876
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	2 cut(s)	248, 672
MwoI	GCNNNNNNNGC	5 cut(s)	18, 72, 706, 968, 977
NdeII	GATC	3 cut(s)	478, 872, 934
NheI	GCTAGC	1 cut(s)	524
NlaIII	CATG	7 cut(s)	176, 230, 312, 391, 970, 975, 979
NlaIV	GGNNCC	4 cut(s)	57, 199, 779, 780
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	847
NsiI	ATGCAT	2 cut(s)	77, 977
NspI	RCATGY	3 cut(s)	230, 312, 975
OliI	CACNNNNGTG	1 cut(s)	322
PaeI	GCATGC	1 cut(s)	975
PciI	ACATGT	1 cut(s)	308
PctI	GAATGC	1 cut(s)	77
PfeI	GAWTC	4 cut(s)	106, 347, 446, 754
PkrI	GCNGC	5 cut(s)	20, 164, 571, 1050, 1053
PleI	GAGTC	2 cut(s)	202, 672
PpsI	GAGTC	2 cut(s)	202, 672
Ppu21I	YACGTR	1 cut(s)	773
PpuMI	RGGWCCY	1 cut(s)	587
PscI	ACATGT	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	587
Psp6I	CCWGG	2 cut(s)	246, 670
PspFI	CCCAGC	2 cut(s)	214, 858
PspGI	CCWGG	2 cut(s)	246, 670
PspN4I	GGNNCC	4 cut(s)	57, 199, 779, 780
PspOMI	GGGCCC	1 cut(s)	778
PspPI	GGNCC	4 cut(s)	197, 587, 778, 779
PspPPI	RGGWCCY	1 cut(s)	587
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	1 cut(s)	934
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	2 cut(s)	320, 322
SalI	GTCGAC	1 cut(s)	439
SatI	GCNGC	5 cut(s)	19, 163, 570, 1049, 1052
Sau3AI	GATC	3 cut(s)	478, 872, 934
Sau96I	GGNCC	4 cut(s)	197, 587, 778, 779
SchI	GAGTC	2 cut(s)	202, 673
ScrFI	CCNGG	2 cut(s)	248, 672
SduI	GDGCHC	2 cut(s)	51, 782
SfaNI	GCATC	5 cut(s)	84, 100, 362, 503, 1023
SinI	GGWCC	1 cut(s)	587
SmiMI	CAYNNNNRTG	2 cut(s)	320, 322
SphI	GCATGC	1 cut(s)	975
Sse9I	AATT	4 cut(s)	558, 646, 723, 876
SsiI	CCGC	5 cut(s)	19, 66, 290, 534, 668
SspMI	CTAG	2 cut(s)	525, 633
StyD4I	CCNGG	2 cut(s)	246, 670
TaiI	ACGT	2 cut(s)	558, 775
TaqI	TCGA	1 cut(s)	440
TasI	AATT	4 cut(s)	558, 646, 723, 876
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	4 cut(s)	106, 347, 446, 754
TscAI	CASTG	2 cut(s)	609, 852
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	4 cut(s)	162, 569, 1048, 1051
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	3 cut(s)	423, 717, 759
TspRI	CASTG	2 cut(s)	609, 852
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	587
XapI	RAATTY	1 cut(s)	723
XceI	RCATGY	3 cut(s)	230, 312, 975
XcmI	CCANNNNNNNNNTGG	1 cut(s)	866
XmiI	GTMKAC	1 cut(s)	440
XspI	CTAG	2 cut(s)	525, 633
Zsp2I	ATGCAT	2 cut(s)	77, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.