Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009444

Physical Location & Seq

Genomic Coordinates Forward (+)

20534666 .. 20540073

Gene Structure 5408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1098600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGTGGTCTGCAAATGCCGCAAGGCTACCAAGCTGTATTGTTTCGTGCACAAGGTTCCGGTTTGTGGAGAATGTATCTGTTCTCCCGAACATCAAATATGCGTGATTCGTACTTATTCAGAATGGGTAATAGATGGAGAGTATGACTGGCCTCCTAGTTGCTGCCTCTGTCATGTTGATCTGGATGAGGGGACTGGCTCTCAAACGACTCGGCTGGGTTGCTTGCATGTAATACATACAAGTTGCCTGGTTTCACATATCAAGAGTTTCCCGTCGCATACTGCACCTGCTGGATATGTTTGTCCTACATGTTCCACATCGATATGGCCTCCCAAGAATGTAAAAGATTCAGCATCCCGCCTTCATTCAAAGTTGAAGGAAGCTATCATGCAGGCAAGGCTTGATTTTTCTGCTGTCGTGCAGACTGGCTTGGAAAAGAACTTGTTTGGAAATCAGCCTGTTTCATTTTCGACAGAATCCCGTAGTCCTCCTCCTGCATTTTCCTCAGATCCACTTGTTAATGCATCTTTGAATGGAAGAAGGGACAATAATGCTAGCTCATCCGCAGGAAAAGATGGACCTAGCATAATTGATTTCTCGGCTACAACTGGAGCAGGACCTTCTATACTTCCAGTGACAGACATAGTGGAGATAGAAGGTCCTACTTCAGCAGGGAATTATGTGAAAAGCATGAGTCCGCCCGGTGCTACGACACGAAAGGGTGCATTCCAAGTTGAGCGACAAAACTCTGAAATTTCATATTATGCTGATGATGAAGATGGGAATCATAAAAAATATTCACGAAGGGGCCCATTCCGACATAAGTTTCTTAGAGCATTGCTTCCATTCTGGTCAAGTGCGTTGCCAACTCTACCAGTGACTTTACCCCAGCGCAAAGATGGATCGATTGAAAATGATGTCCCAGAAGGTCGTCCCCGAAGTAAAAAATCATCAAGAATGGATCCAAGAAAAATCCTACTTGTTATAGCAATCATGGCATGCTTGGCGACTATGGGTATTTTGTATTACAGATTAGTGCAACGGGGTCTTGGTGAGGAGATGCCTGAAGATGAGCAGCAGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

362

Amino Acids

39.68

Weight (kDa)

8.44

Isoelectric Point (pI)

58.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box_ZFPL1	PF25993	1 - 45	2.6e-21	ZFPL1-like, B-box zinc-binding domain
U-box_ZFPL1	PF25998	54 - 129	2.4e-40	ZFPL1-like, U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14835 AT2G14835
fragaria_vesca	FvH4_2g04180
malus_domestica	MD05G1098600.v1.1 MD10G1104500.v1.1
prunus_persica	Prupe.8G143400_v2.0.a1 Prupe.8G143400_v2.0.a1
pyrus_communis	pycom10g09000
rosa_chinensis	RchiOBHm_Chr6g0253531
rosa_laevigata	RLG00000015003
rosa_multiflora	Rmu_co8219316.1_g000001 Rmu_sc0020812.1_g000003 Rmu_ssc0000079.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211800
rosa_rugosa	Rorug05G0544800 Rorug05G0544900 Rorug05G0545000
rosa_samantha	Rh6AG060000 Rh6BG054000 Rh6CG053700 Rh6DG051300
rosa_wichuraiana	Rw6G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	295
Acc36I	ACCTGC	1 cut(s)	295
AciI	CCGC	5 cut(s)	19, 358, 564, 698, 1081
AclWI	GGATC	4 cut(s)	503, 910, 956, 969
AcsI	RAATTY	1 cut(s)	753
AcuI	CTGAAG	2 cut(s)	651, 1086
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	4 cut(s)	369, 376, 532, 911
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	34, 383, 558
AluI	AGCT	3 cut(s)	34, 383, 558
Alw21I	GWGCWC	1 cut(s)	51
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	4 cut(s)	503, 910, 956, 969
AoxI	GGCC	3 cut(s)	149, 326, 808
ApaI	GGGCCC	1 cut(s)	812
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	3 cut(s)	162, 1075, 1078
ApoI	RAATTY	1 cut(s)	753
AspLEI	GCGC	1 cut(s)	894
AspS9I	GGNCC	5 cut(s)	578, 617, 659, 808, 809
AsuC2I	CCSGG	1 cut(s)	702
AsuHPI	GGTGA	1 cut(s)	1064
AsuNHI	GCTAGC	1 cut(s)	554
AvaII	GGWCC	3 cut(s)	578, 617, 659
BaeGI	GKGCMC	2 cut(s)	51, 812
BamHI	GGATCC	1 cut(s)	961
BanII	GRGCYC	1 cut(s)	812
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	4 cut(s)	128, 569, 773, 893
BciT130I	CCWGG	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	702
BfaI	CTAG	3 cut(s)	156, 555, 582
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	4 cut(s)	19, 163, 1076, 1079
BlsI	GCNGC	4 cut(s)	20, 164, 1077, 1080
Bme1390I	CCNGG	2 cut(s)	248, 702
Bme18I	GGWCC	3 cut(s)	578, 617, 659
BmgT120I	GGNCC	5 cut(s)	578, 617, 659, 808, 809
BmiI	GGNNCC	4 cut(s)	57, 809, 810, 963
BmrFI	CCNGG	2 cut(s)	248, 702
BmsI	GCATC	3 cut(s)	362, 533, 1050
BmtI	GCTAGC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	630
BpuMI	CCSGG	1 cut(s)	702
Bsa29I	ATCGAT	2 cut(s)	320, 905
BsaBI	GATNNNNATC	1 cut(s)	783
BsaWI	WCCGGW	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	6 cut(s)	152, 199, 430, 613, 632, 875
Bse3DI	GCAATG	1 cut(s)	836
Bse8I	GATNNNNATC	1 cut(s)	783
BseBI	CCWGG	1 cut(s)	248
BseCI	ATCGAT	2 cut(s)	320, 905
BseGI	GGATG	3 cut(s)	190, 353, 560
BseJI	GATNNNNATC	1 cut(s)	783
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	836
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	6 cut(s)	152, 199, 430, 613, 632, 875
BseRI	GAGGAG	2 cut(s)	480, 1070
BseSI	GKGCMC	2 cut(s)	51, 812
BseXI	GCAGC	1 cut(s)	149
BseYI	CCCAGC	2 cut(s)	214, 888
BsgI	GTGCAG	2 cut(s)	267, 440
BshFI	GGCC	3 cut(s)	151, 328, 810
BshVI	ATCGAT	2 cut(s)	320, 905
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	59, 702
BslFI	GGGAC	4 cut(s)	205, 557, 905, 918
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmFI	GGGAC	4 cut(s)	205, 557, 905, 918
BsmI	GAATGC	1 cut(s)	725
BsnI	GGCC	3 cut(s)	151, 328, 810
Bsp120I	GGGCCC	1 cut(s)	808
Bsp1286I	GDGCHC	2 cut(s)	51, 812
Bsp143I	GATC	4 cut(s)	178, 508, 902, 961
BspACI	CCGC	5 cut(s)	19, 358, 564, 698, 1081
BspANI	GGCC	3 cut(s)	151, 328, 810
BspCNI	CTCAG	1 cut(s)	518
BspDI	ATCGAT	2 cut(s)	320, 905
BspLI	GGNNCC	4 cut(s)	57, 809, 810, 963
BspMI	ACCTGC	1 cut(s)	295
BspOI	GCTAGC	1 cut(s)	558
BspPI	GGATC	4 cut(s)	503, 910, 956, 969
BsrDI	GCAATG	1 cut(s)	836
BsrI	ACTGG	6 cut(s)	152, 199, 430, 613, 632, 875
BssMI	GATC	4 cut(s)	178, 508, 902, 961
Bst2UI	CCWGG	1 cut(s)	248
BstC8I	GCNNGC	4 cut(s)	224, 393, 556, 1000
BstDEI	CTNAG	2 cut(s)	505, 830
BstF5I	GGATG	3 cut(s)	190, 353, 560
BstHHI	GCGC	1 cut(s)	894
BstKTI	GATC	4 cut(s)	181, 511, 905, 964
BstMBI	GATC	4 cut(s)	178, 508, 902, 961
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 397, 995, 1004
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	3 cut(s)	230, 312, 1002
BstSCI	CCNGG	2 cut(s)	246, 700
BstSLI	GKGCMC	2 cut(s)	51, 812
BstV1I	GCAGC	1 cut(s)	149
BstX2I	RGATCY	2 cut(s)	508, 961
BstYI	RGATCY	2 cut(s)	508, 961
Bsu15I	ATCGAT	2 cut(s)	320, 905
BsuRI	GGCC	3 cut(s)	151, 328, 810
BsuTUI	ATCGAT	2 cut(s)	320, 905
BtsCI	GGATG	3 cut(s)	190, 353, 560
BtsIMutI	CAGTG	2 cut(s)	639, 882
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	4 cut(s)	224, 393, 556, 1000
CfoI	GCGC	1 cut(s)	894
Cfr13I	GGNCC	5 cut(s)	578, 617, 659, 808, 809
ClaI	ATCGAT	2 cut(s)	320, 905
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	7 cut(s)	173, 227, 309, 388, 691, 994, 999
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	2 cut(s)	505, 830
DpnI	GATC	4 cut(s)	180, 510, 904, 963
DpnII	GATC	4 cut(s)	178, 508, 902, 961
EciI	GGCGGA	1 cut(s)	687
Eco24I	GRGCYC	1 cut(s)	812
Eco47I	GGWCC	3 cut(s)	578, 617, 659
Eco57I	CTGAAG	2 cut(s)	651, 1086
EcoO109I	RGGNCCY	3 cut(s)	617, 659, 808
EcoRII	CCWGG	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	812
FaeI	CATG	7 cut(s)	176, 230, 312, 391, 694, 997, 1002
FaqI	GGGAC	4 cut(s)	205, 557, 905, 918
FatI	CATG	7 cut(s)	172, 226, 308, 387, 690, 993, 998
FauI	CCCGC	1 cut(s)	365
Fnu4HI	GCNGC	4 cut(s)	19, 163, 1076, 1079
FokI	GGATG	3 cut(s)	197, 340, 547
FriOI	GRGCYC	1 cut(s)	812
Fsp4HI	GCNGC	4 cut(s)	19, 163, 1076, 1079
FspBI	CTAG	3 cut(s)	156, 555, 582
GlaI	GCGC	1 cut(s)	893
GluI	GCNGC	4 cut(s)	19, 163, 1076, 1079
GsaI	CCCAGC	2 cut(s)	218, 892
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	3 cut(s)	151, 328, 810
HapII	CCGG	2 cut(s)	59, 702
HhaI	GCGC	1 cut(s)	894
Hin1II	CATG	7 cut(s)	176, 230, 312, 391, 694, 997, 1002
Hin6I	GCGC	1 cut(s)	892
HinP1I	GCGC	1 cut(s)	892
HinfI	GANTC	6 cut(s)	106, 208, 347, 476, 694, 784
HpaII	CCGG	2 cut(s)	59, 702
HphI	GGTGA	1 cut(s)	1064
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	4 cut(s)	121, 508, 751, 818
Hpy188III	TCNNGA	5 cut(s)	86, 182, 262, 801, 954
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	7 cut(s)	370, 371, 534, 630, 650, 798, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 397, 995, 1004
HpyF3I	CTNAG	2 cut(s)	505, 830
Hsp92II	CATG	7 cut(s)	176, 230, 312, 391, 694, 997, 1002
HspAI	GCGC	1 cut(s)	892
Kzo9I	GATC	4 cut(s)	178, 508, 902, 961
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	3 cut(s)	362, 533, 1050
MaeI	CTAG	3 cut(s)	156, 555, 582
MaeIII	GTNAC	2 cut(s)	634, 877
MalI	GATC	4 cut(s)	180, 510, 904, 963
MboI	GATC	4 cut(s)	178, 508, 902, 961
MboII	GAAGA	3 cut(s)	549, 788, 1079
MflI	RGATCY	2 cut(s)	508, 961
MhlI	GDGCHC	2 cut(s)	51, 812
MluCI	AATT	3 cut(s)	588, 676, 753
MlyI	GAGTC	2 cut(s)	202, 703
MmeI	TCCRAC	1 cut(s)	841
MnlI	CCTC	8 cut(s)	162, 176, 181, 339, 498, 501, 514, 1048
Mph1103I	ATGCAT	1 cut(s)	526
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	322
MspA1I	CMGCKG	1 cut(s)	1081
MspI	CCGG	2 cut(s)	59, 702
MspR9I	CCNGG	2 cut(s)	248, 702
Mva1269I	GAATGC	1 cut(s)	725
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	4 cut(s)	18, 397, 995, 1004
NciI	CCSGG	1 cut(s)	702
NdeII	GATC	4 cut(s)	178, 508, 902, 961
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	7 cut(s)	176, 230, 312, 391, 694, 997, 1002
NlaIV	GGNNCC	4 cut(s)	57, 809, 810, 963
NmeAIII	GCCGAG	2 cut(s)	190, 578
NmuCI	GTSAC	2 cut(s)	634, 877
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	3 cut(s)	230, 312, 1002
PaeI	GCATGC	1 cut(s)	1002
PaqCI	CACCTGC	1 cut(s)	295
PciI	ACATGT	1 cut(s)	308
PctI	GAATGC	1 cut(s)	725
PfeI	GAWTC	4 cut(s)	106, 347, 476, 784
PkrI	GCNGC	4 cut(s)	20, 164, 1077, 1080
PleI	GAGTC	2 cut(s)	202, 702
PpsI	GAGTC	2 cut(s)	202, 702
PpuMI	RGGWCCY	2 cut(s)	617, 659
PscI	ACATGT	1 cut(s)	308
Psp5II	RGGWCCY	2 cut(s)	617, 659
Psp6I	CCWGG	1 cut(s)	246
PspFI	CCCAGC	2 cut(s)	214, 888
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	4 cut(s)	57, 809, 810, 963
PspOMI	GGGCCC	1 cut(s)	808
PspPI	GGNCC	5 cut(s)	578, 617, 659, 808, 809
PspPPI	RGGWCCY	2 cut(s)	617, 659
PsuI	RGATCY	2 cut(s)	508, 961
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	4 cut(s)	19, 163, 1076, 1079
Sau3AI	GATC	4 cut(s)	178, 508, 902, 961
Sau96I	GGNCC	5 cut(s)	578, 617, 659, 808, 809
SchI	GAGTC	2 cut(s)	202, 703
ScrFI	CCNGG	2 cut(s)	248, 702
SduI	GDGCHC	2 cut(s)	51, 812
SetI	ASST	9 cut(s)	36, 57, 289, 385, 560, 583, 622, 661, 931
SfaNI	GCATC	3 cut(s)	362, 533, 1050
SinI	GGWCC	3 cut(s)	578, 617, 659
SmiMI	CAYNNNNRTG	1 cut(s)	322
SphI	GCATGC	1 cut(s)	1002
Sse9I	AATT	3 cut(s)	588, 676, 753
SsiI	CCGC	5 cut(s)	19, 358, 564, 698, 1081
SspI	AATATT	1 cut(s)	797
SspMI	CTAG	3 cut(s)	156, 555, 582
StyD4I	CCNGG	2 cut(s)	246, 700
TaqI	TCGA	3 cut(s)	320, 470, 905
TasI	AATT	3 cut(s)	588, 676, 753
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	4 cut(s)	106, 347, 476, 784
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	2 cut(s)	639, 882
TseFI	GTSAC	2 cut(s)	634, 877
TseI	GCWGC	3 cut(s)	162, 1075, 1078
Tsp45I	GTSAC	2 cut(s)	634, 877
TspDTI	ATGAA	4 cut(s)	353, 453, 747, 789
TspRI	CASTG	2 cut(s)	639, 882
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	3 cut(s)	578, 617, 659
XapI	RAATTY	1 cut(s)	753
XceI	RCATGY	3 cut(s)	230, 312, 1002
XcmI	CCANNNNNNNNNTGG	1 cut(s)	896
XspI	CTAG	3 cut(s)	156, 555, 582
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.