Rorug05G0544800

zinc finger protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009444
Physical Location & Seq
Reverse (-)
73317597 .. 73322774
5178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0544800.1

Sequence Viewer

Length: 342 bp
ATGGAAGTCGTGATTGACAACTCTTGCAGGTTATCTATATCAGAGGTTAATGAACCTGACGAAGAGCTTCTATGTACACAGTTCGTGATGGATATCAACGTTGAGGCCAGAAAGCAGACCTGGGAGGCCGGCAATGTCTACGTTAGGAAAAAGAAACATGGACTCAAACTTGACCTATGGATGTATGAAAACAGGTCAAGGAGCGCCATTGATGGTGGTTGGTTTCGAAGCAACCCGATCATGTTTGCATCTTTATCATGGAATTTGCATTGTGAAGTGGCCGGCGCAGAGCAGGTTTTGCCCACTGTGTCGGTTTTCTTTGCCGGCCGATTGAATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.97

Weight (kDa)

5.57

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 18, 283
AccI GTMKAC 1 cut(s) 138
AclI AACGTT 1 cut(s) 99
AcoI YGGCCR 2 cut(s) 279, 325
AcsI RAATTY 1 cut(s) 262
AfaI GTAC 1 cut(s) 76
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
AoxI GGCC 4 cut(s) 105, 126, 279, 325
ApoI RAATTY 1 cut(s) 262
Asp700I GAANNNNTTC 1 cut(s) 66
AspLEI GCGC 2 cut(s) 206, 287
AsuII TTCGAA 1 cut(s) 226
BccI CCATC 2 cut(s) 82, 206
BciT130I CCWGG 1 cut(s) 121
BfoI RGCGCY 1 cut(s) 207
BfuAI ACCTGC 2 cut(s) 18, 283
Bme1390I CCNGG 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 120
Bse118I RCCGGY 3 cut(s) 128, 281, 323
Bse3DI GCAATG 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 92
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 186
BseJI GATNNNNATC 1 cut(s) 92
BseMI GCAATG 1 cut(s) 139
BseX3I CGGCCG 1 cut(s) 325
Bsh1285I CGRYCG 1 cut(s) 328
BshFI GGCC 4 cut(s) 107, 128, 281, 327
BsiEI CGRYCG 1 cut(s) 328
BsiSI CCGG 3 cut(s) 129, 282, 324
BsnI GGCC 4 cut(s) 107, 128, 281, 327
Bsp119I TTCGAA 1 cut(s) 226
Bsp1407I TGTACA 1 cut(s) 74
Bsp143I GATC 1 cut(s) 237
BspANI GGCC 4 cut(s) 107, 128, 281, 327
BspMI ACCTGC 2 cut(s) 18, 283
BspQI GCTCTTC 1 cut(s) 57
BspT104I TTCGAA 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 139
BsrFI RCCGGY 3 cut(s) 128, 281, 323
BsrGI TGTACA 1 cut(s) 74
BssAI RCCGGY 3 cut(s) 128, 281, 323
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 2 cut(s) 81, 307
Bst6I CTCTTC 1 cut(s) 57
BstAPI GCANNNNNTGC 1 cut(s) 298
BstAUI TGTACA 1 cut(s) 74
BstBI TTCGAA 1 cut(s) 226
BstC8I GCNNGC 3 cut(s) 130, 283, 325
BstF5I GGATG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 2 cut(s) 206, 287
BstKTI GATC 1 cut(s) 240
BstMBI GATC 1 cut(s) 237
BstMCI CGRYCG 1 cut(s) 328
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BstZI CGGCCG 1 cut(s) 325
BsuRI GGCC 4 cut(s) 107, 128, 281, 327
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 303
BveI ACCTGC 2 cut(s) 18, 283
Cac8I GCNNGC 3 cut(s) 130, 283, 325
CfoI GCGC 2 cut(s) 206, 287
Cfr10I RCCGGY 3 cut(s) 128, 281, 323
Csp6I GTAC 1 cut(s) 75
CviAII CATG 3 cut(s) 158, 241, 258
CviJI RGCY 5 cut(s) 67, 107, 128, 281, 327
CviKI_1 RGCY 5 cut(s) 67, 107, 128, 281, 327
CviQI GTAC 1 cut(s) 75
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EaeI YGGCCR 2 cut(s) 279, 325
EagI CGGCCG 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 325
Eco32I GATATC 1 cut(s) 94
Eco52I CGGCCG 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 119
EcoRV GATATC 1 cut(s) 94
FaeI CATG 3 cut(s) 161, 244, 261
FaiI YATR 7 cut(s) 38, 73, 159, 178, 186, 242, 259
FatI CATG 3 cut(s) 157, 240, 257
FblI GTMKAC 1 cut(s) 138
FokI GGATG 1 cut(s) 193
GlaI GCGC 2 cut(s) 205, 286
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 4 cut(s) 107, 128, 281, 327
HapII CCGG 3 cut(s) 129, 282, 324
HhaI GCGC 2 cut(s) 206, 287
Hin1II CATG 3 cut(s) 161, 244, 261
Hin6I GCGC 2 cut(s) 204, 285
HinP1I GCGC 2 cut(s) 204, 285
HinfI GANTC 2 cut(s) 162, 334
HpaII CCGG 3 cut(s) 129, 282, 324
Hpy166II GTNNAC 2 cut(s) 77, 139
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 10, 85
Hpy8I GTNNAC 2 cut(s) 77, 139
HpyCH4III ACNGT 2 cut(s) 81, 307
HpyCH4IV ACGT 2 cut(s) 99, 141
HpyCH4V TGCA 3 cut(s) 27, 248, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpySE526I ACGT 2 cut(s) 99, 141
Hsp92II CATG 3 cut(s) 161, 244, 261
HspAI GCGC 2 cut(s) 204, 285
KroI GCCGGC 3 cut(s) 128, 281, 323
KroNI GCCGGC 3 cut(s) 130, 283, 325
Kzo9I GATC 1 cut(s) 237
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 201
LweI GCATC 1 cut(s) 257
MaeII ACGT 2 cut(s) 99, 141
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 1 cut(s) 74
MluCI AATT 1 cut(s) 262
MlyI GAGTC 1 cut(s) 156
MnlI CCTC 3 cut(s) 37, 97, 118
MroNI GCCGGC 3 cut(s) 128, 281, 323
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 1 cut(s) 48
MspI CCGG 3 cut(s) 129, 282, 324
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 298
NaeI GCCGGC 3 cut(s) 130, 283, 325
NdeII GATC 1 cut(s) 237
NgoMIV GCCGGC 3 cut(s) 128, 281, 323
NlaIII CATG 3 cut(s) 161, 244, 261
NspV TTCGAA 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 57
PdiI GCCGGC 3 cut(s) 130, 283, 325
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 334
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
Psp1406I AACGTT 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 1 cut(s) 237
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 1 cut(s) 121
SfaNI GCATC 1 cut(s) 257
SfuI TTCGAA 1 cut(s) 226
Sse9I AATT 1 cut(s) 262
StyD4I CCNGG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 81, 307
TaiI ACGT 2 cut(s) 102, 144
TaqI TCGA 1 cut(s) 226
TasI AATT 1 cut(s) 262
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 310
TspDTI ATGAA 2 cut(s) 66, 201
TspRI CASTG 1 cut(s) 310
XapI RAATTY 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.