RchiOBHm_Chr6g0253531

zinc finger protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009444
Physical Location & Seq
Forward (+)
8659211 .. 8664779
5569 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22735

Sequence Viewer

Length: 1089 bp
ATGGTGGTCTGCAAATGCAAGAAGGCTACCAAGCTGTATTGTTTCGTGCACAAGGTTCCGGTTTGTGGAGAATGCATTTGTGCTCCAGAGCATCAAATATGTGTGATTCGTACATACTCAGAATGGGTGATAGACGGAGAGTACGATTGGCCTCCTAAATGCTGTCAATGTCACGTTGTGCTCGATGAGGGGACTGGCTCTCAAACGACACGGCTTGGTTGCTTACATGTTATACATACAAGTTGCCTGGTGTCACATATCAAGAGTTTGCCTTCGCATACTGCCCCAGCTGGATATGTTTGTCCTGGATGTTCGACTTCGATATGGCCTCCCAAGAATGTGAAAGATTCAGCATCCCGCTTTCATTCAAAGTTGAAGGAAGCTATCATGCAGGCAAGGCTCAGTCTTGACTCTTCGATAATCATAGGAAAACTTCCATGTCAGTGTAATTTTATCTCGGTGTTAATGACTGGCTTGGAAAAGAACTTGTTTGGAAATCATCCAGTTTCATTGTCATCGACAGAGTCCCGTAGTCCGCCACCTGCATTTTCCTCAGATGCAGGGCAGGGGAATATTGCAACCTCATCTTCATTAGCAAAAGATGAAACTGGAGCAGGGTCTGCTATACTTCAAGTGACAGACATAGTGGAGATAGAAGGTCCTACTTCAGCAGGCAATTTTATAAAAAGCACAAGTCCAGTTGGTCCTGGTGCTACAACACGAAAGGGTGCATTCCAGGTTGAGCGGCAAAATTCTGAAATCTCATATTATGCAGATGATGAAGATGGGAATCGTAAAAAGTATTCACGGAGGGGCCCATTCCGACACAAGTTTCTTAGAGCATTGCTTCCATTCTGGGGAAGTTCATTGCCAATTCTACCAGTGACCGCACCCCAGCGGAAAGATGGATCAATTGCAACAGATGCACCGGAAGGTCGTACCAGACATCAAAAATCATCGAGAATGGATCCAAGAAAAATACTTCTTGTTATAGCAATCATGGCATGCATGGCAACTATGGGTATTTTGTATTATAGATTAGTGCAACGGGGTCTTGGCGAGGAGACTCCTGATGGCGAGCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

362

Amino Acids

39.44

Weight (kDa)

8.69

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box_ZFPL1 PF25993 1 - 45 3.6e-21 ZFPL1-like, B-box zinc-binding domain
U-box_ZFPL1 PF25998 53 - 129 1.1e-38 ZFPL1-like, U-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 683
AarI CACCTGC 1 cut(s) 550
Acc36I ACCTGC 1 cut(s) 550
AccBSI CCGCTC 1 cut(s) 745
AciI CCGC 5 cut(s) 358, 536, 745, 888, 898
AclWI GGATC 3 cut(s) 916, 962, 975
AcsI RAATTY 1 cut(s) 751
AcuI CTGAAG 1 cut(s) 651
AdeI CACNNNGTG 1 cut(s) 178
AfaI GTAC 3 cut(s) 112, 143, 940
AfiI CCNNNNNNNGG 2 cut(s) 65, 857
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 3 cut(s) 369, 376, 632
AjnI CCWGG 4 cut(s) 246, 304, 706, 735
AluBI AGCT 3 cut(s) 34, 290, 383
AluI AGCT 3 cut(s) 34, 290, 383
Alw21I GWGCWC 3 cut(s) 51, 85, 183
Alw26I GTCTC 1 cut(s) 1058
Alw44I GTGCAC 1 cut(s) 47
AlwI GGATC 3 cut(s) 916, 962, 975
AlwNI CAGNNNCTG 1 cut(s) 620
AoxI GGCC 3 cut(s) 149, 326, 814
ApaI GGGCCC 1 cut(s) 818
ApaLI GTGCAC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 1081
ApoI RAATTY 1 cut(s) 751
AspS9I GGNCC 4 cut(s) 659, 704, 814, 815
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 2 cut(s) 659, 704
BaeGI GKGCMC 2 cut(s) 51, 818
BamHI GGATCC 1 cut(s) 967
BanII GRGCYC 1 cut(s) 818
Bbv12I GWGCWC 3 cut(s) 51, 85, 183
BccI CCATC 3 cut(s) 779, 899, 1067
BceAI ACGGC 1 cut(s) 227
BciT130I CCWGG 4 cut(s) 248, 306, 708, 737
BcoDI GTCTC 1 cut(s) 1058
BfuAI ACCTGC 1 cut(s) 550
BisI GCNGC 2 cut(s) 746, 1082
BlsI GCNGC 2 cut(s) 747, 1083
Bme1390I CCNGG 4 cut(s) 248, 306, 708, 737
Bme18I GGWCC 2 cut(s) 659, 704
BmgT120I GGNCC 4 cut(s) 659, 704, 814, 815
BmiI GGNNCC 4 cut(s) 57, 815, 816, 969
BmrFI CCNGG 4 cut(s) 248, 306, 708, 737
BmsI GCATC 4 cut(s) 100, 362, 547, 913
BpmI CTGGAG 2 cut(s) 69, 630
BsaBI GATNNNNATC 1 cut(s) 789
BsaWI WCCGGW 2 cut(s) 58, 928
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 857
Bse1I ACTGG 6 cut(s) 199, 475, 503, 613, 698, 881
Bse3DI GCAATG 2 cut(s) 842, 866
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 4 cut(s) 248, 306, 708, 737
BseGI GGATG 3 cut(s) 314, 353, 499
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 2 cut(s) 65, 857
BseMI GCAATG 2 cut(s) 842, 866
BseMII CTCAG 3 cut(s) 132, 415, 567
BseNI ACTGG 6 cut(s) 199, 475, 503, 613, 698, 881
BseRI GAGGAG 1 cut(s) 1076
BseSI GKGCMC 2 cut(s) 51, 818
BseYI CCCAGC 2 cut(s) 286, 894
BshFI GGCC 3 cut(s) 151, 328, 816
BsiHKAI GWGCWC 3 cut(s) 51, 85, 183
BsiSI CCGG 2 cut(s) 59, 929
BslFI GGGAC 2 cut(s) 205, 511
BslI CCNNNNNNNGG 2 cut(s) 65, 857
BsmAI GTCTC 1 cut(s) 1058
BsmFI GGGAC 2 cut(s) 205, 511
BsmI GAATGC 2 cut(s) 77, 731
BsnI GGCC 3 cut(s) 151, 328, 816
Bsp120I GGGCCC 1 cut(s) 814
Bsp1286I GDGCHC 4 cut(s) 51, 85, 183, 818
Bsp143I GATC 2 cut(s) 908, 967
BspACI CCGC 5 cut(s) 358, 536, 745, 888, 898
BspANI GGCC 3 cut(s) 151, 328, 816
BspCNI CTCAG 3 cut(s) 131, 414, 566
BspLI GGNNCC 4 cut(s) 57, 815, 816, 969
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 3 cut(s) 916, 962, 975
BsrBI CCGCTC 1 cut(s) 745
BsrDI GCAATG 2 cut(s) 842, 866
BsrI ACTGG 6 cut(s) 199, 475, 503, 613, 698, 881
BssMI GATC 2 cut(s) 908, 967
Bst2UI CCWGG 4 cut(s) 248, 306, 708, 737
Bst6I CTCTTC 1 cut(s) 418
BstAPI GCANNNNNTGC 2 cut(s) 620, 923
BstC8I GCNNGC 4 cut(s) 393, 673, 1006, 1079
BstDEI CTNAG 4 cut(s) 118, 401, 553, 836
BstF5I GGATG 3 cut(s) 314, 353, 499
BstKTI GATC 2 cut(s) 911, 970
BstMAI GTCTC 1 cut(s) 1058
BstMBI GATC 2 cut(s) 908, 967
BstMWI GCNNNNNNNGC 5 cut(s) 397, 620, 923, 1001, 1010
BstNI CCWGG 4 cut(s) 248, 306, 708, 737
BstNSI RCATGY 2 cut(s) 230, 1008
BstSCI CCNGG 4 cut(s) 246, 304, 706, 735
BstSLI GKGCMC 2 cut(s) 51, 818
BstX2I RGATCY 1 cut(s) 967
BstYI RGATCY 1 cut(s) 967
BsuRI GGCC 3 cut(s) 151, 328, 816
BtsCI GGATG 3 cut(s) 314, 353, 499
BtsIMutI CAGTG 2 cut(s) 449, 888
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 4 cut(s) 393, 673, 1006, 1079
CaiI CAGNNNCTG 1 cut(s) 620
Cfr13I GGNCC 4 cut(s) 659, 704, 814, 815
Csp6I GTAC 3 cut(s) 111, 142, 939
CviAII CATG 6 cut(s) 227, 388, 438, 1000, 1005, 1009
CviQI GTAC 3 cut(s) 111, 142, 939
DdeI CTNAG 4 cut(s) 118, 401, 553, 836
DpnI GATC 2 cut(s) 910, 969
DpnII GATC 2 cut(s) 908, 967
DraIII CACNNNGTG 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
EciI GGCGGA 1 cut(s) 525
Eco24I GRGCYC 1 cut(s) 818
Eco47I GGWCC 2 cut(s) 659, 704
Eco57I CTGAAG 1 cut(s) 651
EcoO109I RGGNCCY 2 cut(s) 659, 814
EcoRII CCWGG 4 cut(s) 246, 304, 706, 735
EcoT22I ATGCAT 2 cut(s) 77, 1010
EcoT38I GRGCYC 1 cut(s) 818
FaeI CATG 6 cut(s) 230, 391, 441, 1003, 1008, 1012
FaqI GGGAC 2 cut(s) 205, 511
FatI CATG 6 cut(s) 226, 387, 437, 999, 1004, 1008
FauI CCCGC 1 cut(s) 365
Fnu4HI GCNGC 2 cut(s) 746, 1082
FokI GGATG 3 cut(s) 321, 340, 486
FriOI GRGCYC 1 cut(s) 818
Fsp4HI GCNGC 2 cut(s) 746, 1082
GluI GCNGC 2 cut(s) 746, 1082
GsaI CCCAGC 2 cut(s) 290, 898
GsuI CTGGAG 2 cut(s) 69, 630
HaeIII GGCC 3 cut(s) 151, 328, 816
HapII CCGG 2 cut(s) 59, 929
Hin1II CATG 6 cut(s) 230, 391, 441, 1003, 1008, 1012
HinfI GANTC 6 cut(s) 106, 347, 410, 524, 790, 1066
HpaII CCGG 2 cut(s) 59, 929
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 4 cut(s) 121, 556, 757, 824
Hpy188III TCNNGA 5 cut(s) 86, 262, 407, 960, 1070
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 5 cut(s) 16, 282, 370, 650, 926
HpyCH4IV ACGT 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 5 cut(s) 397, 620, 923, 1001, 1010
HpyF3I CTNAG 4 cut(s) 118, 401, 553, 836
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 6 cut(s) 230, 391, 441, 1003, 1008, 1012
Kzo9I GATC 2 cut(s) 908, 967
LmnI GCTCC 2 cut(s) 88, 611
LweI GCATC 4 cut(s) 100, 362, 547, 913
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 4 cut(s) 170, 252, 634, 883
MalI GATC 2 cut(s) 910, 969
MbiI CCGCTC 1 cut(s) 745
MboI GATC 2 cut(s) 908, 967
MboII GAAGA 3 cut(s) 405, 579, 794
MfeI CAATTG 1 cut(s) 912
MflI RGATCY 1 cut(s) 967
MhlI GDGCHC 4 cut(s) 51, 85, 183, 818
MluCI AATT 5 cut(s) 448, 676, 751, 873, 912
MlyI GAGTC 3 cut(s) 404, 533, 1060
MmeI TCCRAC 1 cut(s) 847
MnlI CCTC 7 cut(s) 162, 181, 339, 562, 592, 804, 1054
Mph1103I ATGCAT 2 cut(s) 77, 1010
MseI TTAA 1 cut(s) 464
MslI CAYNNNNRTG 1 cut(s) 442
MspA1I CMGCKG 2 cut(s) 290, 898
MspI CCGG 2 cut(s) 59, 929
MspR9I CCNGG 4 cut(s) 248, 306, 708, 737
MunI CAATTG 1 cut(s) 912
Mva1269I GAATGC 2 cut(s) 77, 731
MvaI CCWGG 4 cut(s) 248, 306, 708, 737
MwoI GCNNNNNNNGC 5 cut(s) 397, 620, 923, 1001, 1010
NdeII GATC 2 cut(s) 908, 967
NlaIII CATG 6 cut(s) 230, 391, 441, 1003, 1008, 1012
NlaIV GGNNCC 4 cut(s) 57, 815, 816, 969
NmuCI GTSAC 4 cut(s) 170, 252, 634, 883
NsiI ATGCAT 2 cut(s) 77, 1010
NspI RCATGY 2 cut(s) 230, 1008
PaeI GCATGC 1 cut(s) 1008
PaqCI CACCTGC 1 cut(s) 550
PciI ACATGT 1 cut(s) 226
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 180
PctI GAATGC 2 cut(s) 77, 731
PfeI GAWTC 3 cut(s) 106, 347, 790
PflFI GACNNNGTC 1 cut(s) 523
PfoI TCCNGGA 1 cut(s) 304
PkrI GCNGC 2 cut(s) 747, 1083
PleI GAGTC 3 cut(s) 404, 532, 1060
PpsI GAGTC 3 cut(s) 404, 532, 1060
PpuMI RGGWCCY 1 cut(s) 659
PscI ACATGT 1 cut(s) 226
PsiI TTATAA 1 cut(s) 683
Psp5II RGGWCCY 1 cut(s) 659
Psp6I CCWGG 4 cut(s) 246, 304, 706, 735
PspFI CCCAGC 2 cut(s) 286, 894
PspGI CCWGG 4 cut(s) 246, 304, 706, 735
PspN4I GGNNCC 4 cut(s) 57, 815, 816, 969
PspOMI GGGCCC 1 cut(s) 814
PspPI GGNCC 4 cut(s) 659, 704, 814, 815
PspPPI RGGWCCY 1 cut(s) 659
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 1 cut(s) 967
PsyI GACNNNGTC 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 3 cut(s) 112, 143, 940
RsaNI GTAC 3 cut(s) 111, 142, 939
RseI CAYNNNNRTG 1 cut(s) 442
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 2 cut(s) 746, 1082
Sau3AI GATC 2 cut(s) 908, 967
Sau96I GGNCC 4 cut(s) 659, 704, 814, 815
SchI GAGTC 3 cut(s) 404, 533, 1060
ScrFI CCNGG 4 cut(s) 248, 306, 708, 737
SduI GDGCHC 4 cut(s) 51, 85, 183, 818
SfaNI GCATC 4 cut(s) 100, 362, 547, 913
SinI GGWCC 2 cut(s) 659, 704
SmiMI CAYNNNNRTG 1 cut(s) 442
SphI GCATGC 1 cut(s) 1008
Sse9I AATT 5 cut(s) 448, 676, 751, 873, 912
SsiI CCGC 5 cut(s) 358, 536, 745, 888, 898
SspI AATATT 1 cut(s) 574
StyD4I CCNGG 4 cut(s) 246, 304, 706, 735
TaiI ACGT 1 cut(s) 177
TaqI TCGA 6 cut(s) 183, 314, 320, 416, 518, 959
TasI AATT 5 cut(s) 448, 676, 751, 873, 912
TauI GCSGC 1 cut(s) 748
TfiI GAWTC 3 cut(s) 106, 347, 790
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 2 cut(s) 449, 888
TseFI GTSAC 4 cut(s) 170, 252, 634, 883
TseI GCWGC 1 cut(s) 1081
Tsp45I GTSAC 4 cut(s) 170, 252, 634, 883
TspDTI ATGAA 6 cut(s) 353, 498, 579, 618, 795, 855
TspGWI ACGGA 2 cut(s) 150, 823
TspRI CASTG 2 cut(s) 449, 888
Tth111I GACNNNGTC 1 cut(s) 523
VneI GTGCAC 1 cut(s) 47
VpaK11BI GGWCC 2 cut(s) 659, 704
XapI RAATTY 1 cut(s) 751
XceI RCATGY 2 cut(s) 230, 1008
XcmI CCANNNNNNNNNTGG 1 cut(s) 902
Zsp2I ATGCAT 2 cut(s) 77, 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.