Rorug05G0544900

zinc finger protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009444
Physical Location & Seq
Forward (+)
73328076 .. 73328932
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0544900.1

Sequence Viewer

Length: 462 bp
ATGTCTGCAACCCTAGCGCTCTCCGGCCTCTCCTTCTCCGCCGCGGCGAACCACAGGCTCTCCTCCGCCGCTTTTACCGACATGCCCCTGCCTCGCCGGCAGCTGAAGGTCTCCGTGAGGGCGTTCGCCGAGACGGAGCGGCGGCCGGCGACGGCGGCTCCGGCGAGCCTGTACGAGGTTCTGCAGGTGAAGAACAACGCGTCGCAGACGGAGATCAAGTCGGCGTACAGGAGCTTGGCGAAGCTGCACCACCCGGACGCGTCGTCGGAGTCCGAATCGGACGGCCGGGATTTCATCGAGATTCACAACGCGTACGCCACGCTGTCGGATCCGGCGGCCAGAGCGATGTATGATCTGTCGCTGAGTGCTCATGTTCATTGTGATCGCCGGAGAAGCGCCGTCGGGTTTCGGCCCAATGGGTTTTATTCGACCCGGAGGTGGGAAACGGACCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.97

Weight (kDa)

9.06

Isoelectric Point (pI)

75.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 57 - 118 3e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 175
Acc36I ACCTGC 1 cut(s) 175
AccBSI CCGCTC 1 cut(s) 139
AccII CGCG 4 cut(s) 44, 200, 260, 311
AciI CCGC 9 cut(s) 39, 42, 44, 66, 69, 139, 142, 155, 335
AclWI GGATC 2 cut(s) 323, 336
AcoI YGGCCR 3 cut(s) 143, 283, 336
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 3 cut(s) 173, 227, 314
AfeI AGCGCT 1 cut(s) 18
AfiI CCNNNNNNNGG 3 cut(s) 175, 438, 439
AflIII ACRYGT 3 cut(s) 198, 258, 309
AhdI GACNNNNNGTC 1 cut(s) 262
AluBI AGCT 3 cut(s) 103, 234, 244
AluI AGCT 3 cut(s) 103, 234, 244
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 2 cut(s) 115, 125
AlwI GGATC 2 cut(s) 323, 336
Aor51HI AGCGCT 1 cut(s) 18
AoxI GGCC 5 cut(s) 25, 143, 283, 336, 410
ApeKI GCWGC 2 cut(s) 100, 244
AspLEI GCGC 2 cut(s) 19, 398
AspS9I GGNCC 2 cut(s) 411, 448
AsuC2I CCSGG 3 cut(s) 254, 287, 433
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 448
BamHI GGATCC 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 112, 231
BceAI ACGGC 3 cut(s) 168, 298, 383
BcnI CCSGG 3 cut(s) 254, 287, 433
BcoDI GTCTC 2 cut(s) 115, 125
BfaI CTAG 1 cut(s) 14
BfmI CTRYAG 1 cut(s) 182
BfoI RGCGCY 2 cut(s) 20, 399
BfuAI ACCTGC 1 cut(s) 175
BglI GCCNNNNNGGC 1 cut(s) 97
BisI GCNGC 9 cut(s) 42, 45, 69, 101, 140, 143, 156, 245, 336
BlsI GCNGC 9 cut(s) 43, 46, 70, 102, 141, 144, 157, 246, 337
Bme1390I CCNGG 3 cut(s) 254, 287, 433
Bme18I GGWCC 1 cut(s) 448
BmeRI GACNNNNNGTC 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 411, 448
BmiI GGNNCC 2 cut(s) 159, 330
BmrFI CCNGG 3 cut(s) 254, 287, 433
BpuMI CCSGG 3 cut(s) 254, 287, 433
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 42
BsaXI ACNNNNNCTCC 6 cut(s) 44, 74, 142, 172, 203, 233
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 438, 439
Bse118I RCCGGY 2 cut(s) 96, 145
Bse1I ACTGG 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 3 cut(s) 175, 438, 439
BseMII CTCAG 1 cut(s) 353
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 1 cut(s) 52
BseX3I CGGCCG 2 cut(s) 143, 283
BseXI GCAGC 2 cut(s) 112, 231
BsgI GTGCAG 1 cut(s) 230
Bsh1236I CGCG 4 cut(s) 44, 200, 260, 311
Bsh1285I CGRYCG 2 cut(s) 146, 286
BshFI GGCC 5 cut(s) 27, 145, 285, 338, 412
BsiEI CGRYCG 2 cut(s) 146, 286
BsiHKAI GWGCWC 1 cut(s) 370
BsiSI CCGG 9 cut(s) 24, 97, 146, 161, 254, 286, 332, 388, 433
BsiWI CGTACG 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 175, 438, 439
BsmAI GTCTC 2 cut(s) 115, 125
BsmBI CGTCTC 1 cut(s) 125
BsnI GGCC 5 cut(s) 27, 145, 285, 338, 412
Bso31I GGTCTC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 4 cut(s) 213, 328, 352, 382
BspACI CCGC 9 cut(s) 39, 42, 44, 66, 69, 139, 142, 155, 335
BspANI GGCC 5 cut(s) 27, 145, 285, 338, 412
BspCNI CTCAG 1 cut(s) 354
BspFNI CGCG 4 cut(s) 44, 200, 260, 311
BspLI GGNNCC 2 cut(s) 159, 330
BspMAI CTGCAG 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 2 cut(s) 323, 336
BspTNI GGTCTC 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 96, 145
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 2 cut(s) 96, 145
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 4 cut(s) 213, 328, 352, 382
BstC8I GCNNGC 3 cut(s) 98, 147, 166
BstDEI CTNAG 1 cut(s) 362
BstDSI CCRYGG 1 cut(s) 42
BstENI CCTNNNNNAGG 1 cut(s) 173
BstFNI CGCG 4 cut(s) 44, 200, 260, 311
BstH2I RGCGCY 2 cut(s) 20, 399
BstHHI GCGC 2 cut(s) 19, 398
BstKTI GATC 4 cut(s) 216, 331, 355, 385
BstMAI GTCTC 2 cut(s) 115, 125
BstMBI GATC 4 cut(s) 213, 328, 352, 382
BstMCI CGRYCG 2 cut(s) 146, 286
BstMWI GCNNNNNNNGC 6 cut(s) 14, 97, 155, 161, 341, 393
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 3 cut(s) 252, 285, 431
BstSFI CTRYAG 1 cut(s) 182
BstUI CGCG 4 cut(s) 44, 200, 260, 311
BstV1I GCAGC 2 cut(s) 112, 231
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BstZI CGGCCG 2 cut(s) 143, 283
BsuRI GGCC 5 cut(s) 27, 145, 285, 338, 412
BtgI CCRYGG 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 458
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 3 cut(s) 98, 147, 166
CfoI GCGC 2 cut(s) 19, 398
Cfr10I RCCGGY 2 cut(s) 96, 145
Cfr13I GGNCC 2 cut(s) 411, 448
Cfr42I CCGCGG 1 cut(s) 45
CseI GACGC 3 cut(s) 189, 249, 266
Csp6I GTAC 3 cut(s) 172, 226, 313
CviAII CATG 2 cut(s) 82, 371
CviQI GTAC 3 cut(s) 172, 226, 313
DdeI CTNAG 1 cut(s) 362
DpnI GATC 4 cut(s) 215, 330, 354, 384
DpnII GATC 4 cut(s) 213, 328, 352, 382
DriI GACNNNNNGTC 1 cut(s) 262
EaeI YGGCCR 3 cut(s) 143, 283, 336
EagI CGGCCG 2 cut(s) 143, 283
Eam1105I GACNNNNNGTC 1 cut(s) 262
EciI GGCGGA 2 cut(s) 28, 55
EclXI CGGCCG 2 cut(s) 143, 283
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 448
Eco47III AGCGCT 1 cut(s) 18
Eco52I CGGCCG 2 cut(s) 143, 283
Eco57I CTGAAG 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 173
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 2 cut(s) 85, 374
FaiI YATR 3 cut(s) 83, 351, 372
FatI CATG 2 cut(s) 81, 370
Fnu4HI GCNGC 9 cut(s) 42, 45, 69, 101, 140, 143, 156, 245, 336
Fsp4HI GCNGC 9 cut(s) 42, 45, 69, 101, 140, 143, 156, 245, 336
FspBI CTAG 1 cut(s) 14
GlaI GCGC 2 cut(s) 18, 397
GluI GCNGC 9 cut(s) 42, 45, 69, 101, 140, 143, 156, 245, 336
HaeII RGCGCY 2 cut(s) 20, 399
HaeIII GGCC 5 cut(s) 27, 145, 285, 338, 412
HapII CCGG 9 cut(s) 24, 97, 146, 161, 254, 286, 332, 388, 433
HgaI GACGC 3 cut(s) 189, 249, 266
HhaI GCGC 2 cut(s) 19, 398
Hin1II CATG 2 cut(s) 85, 374
Hin6I GCGC 2 cut(s) 17, 396
HinP1I GCGC 2 cut(s) 17, 396
HinfI GANTC 3 cut(s) 269, 275, 301
HpaII CCGG 9 cut(s) 24, 97, 146, 161, 254, 286, 332, 388, 433
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 4 cut(s) 268, 274, 280, 328
Hpy188III TCNNGA 1 cut(s) 298
Hpy99I CGWCG 5 cut(s) 154, 205, 265, 268, 404
HpyAV CCTTC 2 cut(s) 43, 100
HpyCH4V TGCA 3 cut(s) 8, 184, 247
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 97, 155, 161, 341, 393
HpyF3I CTNAG 1 cut(s) 362
Hsp92II CATG 2 cut(s) 85, 374
HspAI GCGC 2 cut(s) 17, 396
KroI GCCGGC 2 cut(s) 96, 145
KroNI GCCGGC 2 cut(s) 98, 147
KspI CCGCGG 1 cut(s) 45
Kzo9I GATC 4 cut(s) 213, 328, 352, 382
LmnI GCTCC 3 cut(s) 136, 163, 231
Lsp1109I GCAGC 2 cut(s) 112, 231
MaeI CTAG 1 cut(s) 14
MalI GATC 4 cut(s) 215, 330, 354, 384
MbiI CCGCTC 1 cut(s) 139
MboI GATC 4 cut(s) 213, 328, 352, 382
MboII GAAGA 1 cut(s) 202
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 370
MluI ACGCGT 3 cut(s) 198, 258, 309
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 2 cut(s) 246, 306
MnlI CCTC 6 cut(s) 38, 73, 102, 111, 169, 429
MroNI GCCGGC 2 cut(s) 96, 145
MspA1I CMGCKG 2 cut(s) 44, 103
MspI CCGG 9 cut(s) 24, 97, 146, 161, 254, 286, 332, 388, 433
MspR9I CCNGG 3 cut(s) 254, 287, 433
MvnI CGCG 4 cut(s) 44, 200, 260, 311
MwoI GCNNNNNNNGC 6 cut(s) 14, 97, 155, 161, 341, 393
NaeI GCCGGC 2 cut(s) 98, 147
NciI CCSGG 3 cut(s) 254, 287, 433
NdeII GATC 4 cut(s) 213, 328, 352, 382
NgoMIV GCCGGC 2 cut(s) 96, 145
NlaIII CATG 2 cut(s) 85, 374
NlaIV GGNNCC 2 cut(s) 159, 330
NmeAIII GCCGAG 1 cut(s) 154
NspI RCATGY 1 cut(s) 85
PaqCI CACCTGC 1 cut(s) 175
PdiI GCCGGC 2 cut(s) 98, 147
PfeI GAWTC 2 cut(s) 275, 301
Pfl23II CGTACG 1 cut(s) 312
PkrI GCNGC 9 cut(s) 43, 46, 70, 102, 141, 144, 157, 246, 337
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PspLI CGTACG 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 159, 330
PspPI GGNCC 2 cut(s) 411, 448
PstI CTGCAG 1 cut(s) 186
PsuI RGATCY 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 103
RsaI GTAC 3 cut(s) 173, 227, 314
RsaNI GTAC 3 cut(s) 172, 226, 313
SacII CCGCGG 1 cut(s) 45
SatI GCNGC 9 cut(s) 42, 45, 69, 101, 140, 143, 156, 245, 336
Sau3AI GATC 4 cut(s) 213, 328, 352, 382
Sau96I GGNCC 2 cut(s) 411, 448
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 3 cut(s) 254, 287, 433
SduI GDGCHC 1 cut(s) 370
SetI ASST 7 cut(s) 105, 111, 180, 189, 236, 246, 440
SfcI CTRYAG 1 cut(s) 182
Sfr303I CCGCGG 1 cut(s) 45
SgrBI CCGCGG 1 cut(s) 45
SinI GGWCC 1 cut(s) 448
SsiI CCGC 9 cut(s) 39, 42, 44, 66, 69, 139, 142, 155, 335
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 3 cut(s) 252, 285, 431
TaqI TCGA 2 cut(s) 297, 428
TauI GCSGC 7 cut(s) 44, 47, 71, 142, 145, 158, 338
TfiI GAWTC 2 cut(s) 275, 301
TscAI CASTG 1 cut(s) 458
TseI GCWGC 2 cut(s) 100, 244
TspDTI ATGAA 2 cut(s) 283, 365
TspGWI ACGGA 4 cut(s) 103, 149, 224, 461
TspRI CASTG 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 448
XagI CCTNNNNNAGG 1 cut(s) 173
XceI RCATGY 1 cut(s) 85
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.