Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020812.1

Orthogroup ID

OG0009444

Physical Location & Seq

Genomic Coordinates Forward (+)

10548 .. 15291

Gene Structure 4744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020812.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atggtggtctgcaaatgcaagaaggctaccaagctgtattgtttcgtgcacaaggttccggtttgtggagaatgcatttgtgctccagagcatcaaatttgtgtgatatggcctcccaagaatgtgaaagattcagcatcccgctttcattcaaagttgaaggaagctatcatgcagactggcttggaaaagaacttgtttggaaatcatccagtttcattgtcatcgacagagtcccgtagtccgccacctgcattttcctcagatgcagggcaggggaatattgcaacctcatcttcattagcaaaagatgaaactggagcagggtctgctatacttcaagtgacagacatagtggagatagaaggtcctagttcagcagggaattttataaaaagcacaagtccagttggtcctggtgctacaacacgaaagggtgcattccaggttgagcggcaaaattctgaaatctcatattatgcagatgatgaagatgggaatcgtaaaaagtattcacggaggggcccattccgacacaagtttcttagagcattgcttccattctggggaagttcattgccaattctaccagtgactgcaccccagcggaaagatggatcaattgcaacagatgcaccggaaggtcgtaccagacatcaaaaatcatcaagaatggatccaagaaaaatacttcttgttatagcaatcatggcatgcatggcaactatgggtattttgtattatagattagtgcaacggggtcttggcgaggagactcctgatggcgagcagcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

28.91

Weight (kDa)

9.17

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14835 AT2G14835
fragaria_vesca	FvH4_2g04180
malus_domestica	MD05G1098600.v1.1 MD10G1104500.v1.1
prunus_persica	Prupe.8G143400_v2.0.a1 Prupe.8G143400_v2.0.a1
pyrus_communis	pycom10g09000
rosa_chinensis	RchiOBHm_Chr6g0253531
rosa_laevigata	RLG00000015003
rosa_multiflora	Rmu_co8219316.1_g000001 Rmu_sc0020812.1_g000003 Rmu_ssc0000079.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211800
rosa_rugosa	Rorug05G0544800 Rorug05G0544900 Rorug05G0545000
rosa_samantha	Rh6AG060000 Rh6BG054000 Rh6CG053700 Rh6DG051300
rosa_wichuraiana	Rw6G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	259
AccBSI	CCGCTC	1 cut(s)	454
AciI	CCGC	4 cut(s)	142, 245, 454, 607
AclWI	GGATC	3 cut(s)	625, 671, 684
AcsI	RAATTY	3 cut(s)	96, 385, 460
AfaI	GTAC	1 cut(s)	649
AfiI	CCNNNNNNNGG	2 cut(s)	65, 566
AgsI	TTSAA	3 cut(s)	153, 160, 341
AjnI	CCWGG	2 cut(s)	415, 444
AluBI	AGCT	2 cut(s)	34, 167
AluI	AGCT	2 cut(s)	34, 167
Alw21I	GWGCWC	2 cut(s)	51, 85
Alw26I	GTCTC	1 cut(s)	767
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	3 cut(s)	625, 671, 684
AlwNI	CAGNNNCTG	2 cut(s)	329, 596
AoxI	GGCC	2 cut(s)	110, 523
ApaI	GGGCCC	1 cut(s)	527
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	790
ApoI	RAATTY	3 cut(s)	96, 385, 460
AspS9I	GGNCC	4 cut(s)	368, 413, 523, 524
AvaII	GGWCC	2 cut(s)	368, 413
BaeGI	GKGCMC	2 cut(s)	51, 527
BamHI	GGATCC	1 cut(s)	676
BanII	GRGCYC	1 cut(s)	527
Bbv12I	GWGCWC	2 cut(s)	51, 85
BccI	CCATC	3 cut(s)	488, 608, 776
BciT130I	CCWGG	2 cut(s)	417, 446
BcoDI	GTCTC	1 cut(s)	767
BfaI	CTAG	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	2 cut(s)	455, 791
BlsI	GCNGC	2 cut(s)	456, 792
Bme1390I	CCNGG	2 cut(s)	417, 446
Bme18I	GGWCC	2 cut(s)	368, 413
BmgT120I	GGNCC	4 cut(s)	368, 413, 523, 524
BmiI	GGNNCC	4 cut(s)	57, 524, 525, 678
BmrFI	CCNGG	2 cut(s)	417, 446
BmsI	GCATC	4 cut(s)	100, 146, 256, 622
BpmI	CTGGAG	2 cut(s)	69, 339
BsaBI	GATNNNNATC	1 cut(s)	498
BsaWI	WCCGGW	2 cut(s)	58, 637
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 566
Bse1I	ACTGG	5 cut(s)	184, 212, 322, 407, 590
Bse3DI	GCAATG	2 cut(s)	551, 575
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	417, 446
BseGI	GGATG	2 cut(s)	137, 208
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	65, 566
BseMI	GCAATG	2 cut(s)	551, 575
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	5 cut(s)	184, 212, 322, 407, 590
BseRI	GAGGAG	1 cut(s)	785
BseSI	GKGCMC	2 cut(s)	51, 527
BseYI	CCCAGC	1 cut(s)	603
BsgI	GTGCAG	1 cut(s)	582
BshFI	GGCC	2 cut(s)	112, 525
BsiHKAI	GWGCWC	2 cut(s)	51, 85
BsiSI	CCGG	2 cut(s)	59, 638
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	2 cut(s)	65, 566
BsmAI	GTCTC	1 cut(s)	767
BsmFI	GGGAC	1 cut(s)	220
BsmI	GAATGC	2 cut(s)	77, 440
BsnI	GGCC	2 cut(s)	112, 525
Bsp120I	GGGCCC	1 cut(s)	523
Bsp1286I	GDGCHC	3 cut(s)	51, 85, 527
Bsp143I	GATC	2 cut(s)	617, 676
BspACI	CCGC	4 cut(s)	142, 245, 454, 607
BspANI	GGCC	2 cut(s)	112, 525
BspCNI	CTCAG	1 cut(s)	275
BspLI	GGNNCC	4 cut(s)	57, 524, 525, 678
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	3 cut(s)	625, 671, 684
BsrBI	CCGCTC	1 cut(s)	454
BsrDI	GCAATG	2 cut(s)	551, 575
BsrI	ACTGG	5 cut(s)	184, 212, 322, 407, 590
BssMI	GATC	2 cut(s)	617, 676
Bst2UI	CCWGG	2 cut(s)	417, 446
BstAPI	GCANNNNNTGC	2 cut(s)	329, 632
BstC8I	GCNNGC	2 cut(s)	715, 788
BstDEI	CTNAG	2 cut(s)	262, 545
BstF5I	GGATG	2 cut(s)	137, 208
BstKTI	GATC	2 cut(s)	620, 679
BstMAI	GTCTC	1 cut(s)	767
BstMBI	GATC	2 cut(s)	617, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	329, 632, 710, 719
BstNI	CCWGG	2 cut(s)	417, 446
BstNSI	RCATGY	1 cut(s)	717
BstSCI	CCNGG	2 cut(s)	415, 444
BstSLI	GKGCMC	2 cut(s)	51, 527
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	112, 525
BtsCI	GGATG	2 cut(s)	137, 208
BtsIMutI	CAGTG	1 cut(s)	597
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	715, 788
CaiI	CAGNNNCTG	2 cut(s)	329, 596
Cfr13I	GGNCC	4 cut(s)	368, 413, 523, 524
Csp6I	GTAC	1 cut(s)	648
CviAII	CATG	4 cut(s)	172, 709, 714, 718
CviJI	RGCY	6 cut(s)	26, 34, 112, 167, 183, 525
CviKI_1	RGCY	6 cut(s)	26, 34, 112, 167, 183, 525
CviQI	GTAC	1 cut(s)	648
DdeI	CTNAG	2 cut(s)	262, 545
DpnI	GATC	2 cut(s)	619, 678
DpnII	GATC	2 cut(s)	617, 676
EciI	GGCGGA	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	527
Eco47I	GGWCC	2 cut(s)	368, 413
EcoO109I	RGGNCCY	2 cut(s)	368, 523
EcoRII	CCWGG	2 cut(s)	415, 444
EcoT22I	ATGCAT	2 cut(s)	77, 719
EcoT38I	GRGCYC	1 cut(s)	527
FaeI	CATG	4 cut(s)	175, 712, 717, 721
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	4 cut(s)	171, 708, 713, 717
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	2 cut(s)	455, 791
FokI	GGATG	2 cut(s)	124, 195
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	2 cut(s)	455, 791
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	2 cut(s)	455, 791
GsaI	CCCAGC	1 cut(s)	607
GsuI	CTGGAG	2 cut(s)	69, 339
HaeIII	GGCC	2 cut(s)	112, 525
HapII	CCGG	2 cut(s)	59, 638
Hin1II	CATG	4 cut(s)	175, 712, 717, 721
HinfI	GANTC	4 cut(s)	131, 233, 499, 775
HpaII	CCGG	2 cut(s)	59, 638
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	265, 466, 533
Hpy188III	TCNNGA	3 cut(s)	86, 669, 779
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	4 cut(s)	16, 154, 359, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	329, 632, 710, 719
HpyF3I	CTNAG	2 cut(s)	262, 545
Hsp92II	CATG	4 cut(s)	175, 712, 717, 721
Kzo9I	GATC	2 cut(s)	617, 676
LmnI	GCTCC	2 cut(s)	88, 320
LweI	GCATC	4 cut(s)	100, 146, 256, 622
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	2 cut(s)	343, 592
MalI	GATC	2 cut(s)	619, 678
MbiI	CCGCTC	1 cut(s)	454
MboI	GATC	2 cut(s)	617, 676
MboII	GAAGA	2 cut(s)	288, 503
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	3 cut(s)	51, 85, 527
MluCI	AATT	5 cut(s)	96, 385, 460, 582, 621
MlyI	GAGTC	2 cut(s)	242, 769
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	5 cut(s)	123, 271, 301, 513, 763
Mph1103I	ATGCAT	2 cut(s)	77, 719
MspA1I	CMGCKG	1 cut(s)	607
MspI	CCGG	2 cut(s)	59, 638
MspR9I	CCNGG	2 cut(s)	417, 446
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	2 cut(s)	77, 440
MvaI	CCWGG	2 cut(s)	417, 446
MwoI	GCNNNNNNNGC	4 cut(s)	329, 632, 710, 719
NdeII	GATC	2 cut(s)	617, 676
NlaIII	CATG	4 cut(s)	175, 712, 717, 721
NlaIV	GGNNCC	4 cut(s)	57, 524, 525, 678
NmuCI	GTSAC	2 cut(s)	343, 592
NsiI	ATGCAT	2 cut(s)	77, 719
NspI	RCATGY	1 cut(s)	717
PaeI	GCATGC	1 cut(s)	717
PaqCI	CACCTGC	1 cut(s)	259
PctI	GAATGC	2 cut(s)	77, 440
PfeI	GAWTC	2 cut(s)	131, 499
PflFI	GACNNNGTC	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	456, 792
PleI	GAGTC	2 cut(s)	241, 769
PpsI	GAGTC	2 cut(s)	241, 769
PpuMI	RGGWCCY	1 cut(s)	368
PsiI	TTATAA	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	415, 444
PspFI	CCCAGC	1 cut(s)	603
PspGI	CCWGG	2 cut(s)	415, 444
PspN4I	GGNNCC	4 cut(s)	57, 524, 525, 678
PspOMI	GGGCCC	1 cut(s)	523
PspPI	GGNCC	4 cut(s)	368, 413, 523, 524
PspPPI	RGGWCCY	1 cut(s)	368
PstNI	CAGNNNCTG	2 cut(s)	329, 596
PsuI	RGATCY	1 cut(s)	676
PsyI	GACNNNGTC	1 cut(s)	232
RsaI	GTAC	1 cut(s)	649
RsaNI	GTAC	1 cut(s)	648
SatI	GCNGC	2 cut(s)	455, 791
Sau3AI	GATC	2 cut(s)	617, 676
Sau96I	GGNCC	4 cut(s)	368, 413, 523, 524
SchI	GAGTC	2 cut(s)	242, 769
ScrFI	CCNGG	2 cut(s)	417, 446
SduI	GDGCHC	3 cut(s)	51, 85, 527
SetI	ASST	8 cut(s)	36, 57, 169, 253, 293, 370, 450, 646
SfaNI	GCATC	4 cut(s)	100, 146, 256, 622
SinI	GGWCC	2 cut(s)	368, 413
SphI	GCATGC	1 cut(s)	717
Sse9I	AATT	5 cut(s)	96, 385, 460, 582, 621
SsiI	CCGC	4 cut(s)	142, 245, 454, 607
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	415, 444
TaqI	TCGA	1 cut(s)	227
TasI	AATT	5 cut(s)	96, 385, 460, 582, 621
TauI	GCSGC	1 cut(s)	457
TfiI	GAWTC	2 cut(s)	131, 499
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	2 cut(s)	343, 592
TseI	GCWGC	1 cut(s)	790
Tsp45I	GTSAC	2 cut(s)	343, 592
TspDTI	ATGAA	6 cut(s)	137, 207, 288, 327, 504, 564
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	1 cut(s)	597
Tth111I	GACNNNGTC	1 cut(s)	232
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	368, 413
XapI	RAATTY	3 cut(s)	96, 385, 460
XceI	RCATGY	1 cut(s)	717
XcmI	CCANNNNNNNNNTGG	1 cut(s)	611
XspI	CTAG	1 cut(s)	372
Zsp2I	ATGCAT	2 cut(s)	77, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.