Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009444

Physical Location & Seq

Genomic Coordinates Forward (+)

9024119 .. 9029923

Gene Structure 5805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG060000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGTGGTCTGCAAATGCAAGAAGGCTACCAAGCTGTATTGTTTCGTGCACAAGGTTCCGGTTTGTGGAGAATGCATTTGTGCTCCAGAGCATCAAATATGTGTGATTCGTACATACTCAGAATGGGTGATAGACGGAGAGTACGATTGGCCTCCTAAATGCTGTCAATGTCAGGTTGTGCTCGATGAGGGGACTGGCTCTCAAACGACACGGCTTGGTTGCTTACATGTTATACATACAAGTTGCCTGGTGTCACACATCAAGAGTTTCCCTTCGCATACTGCCCCAGCTGGATATGTTTGTCCTGGATGTTCGACATCGATATGGCCTCCCAAGAATGTGAAAGATTCAGCATCCCACTTTCATTCAAAGTTGAAGGAAGCTATCATGCAGACTGGCTTGGAAAAGAACTTGTTTGGAAATCATCCAGTTTCATTGTTATCGACAGAGTCCCGTAGTCCGCCACCTGCGTTTTCCTCAGATGCAGGGCAGGGGAGTATTGCAACCTCATCTTCATTAGCAAAAGATGAAACTGGAGCAGGGTCTGCTATACTTCAAGTGACAGACATAGTGGAGATAGAAGGTCCTAGTTCAGCAGGGAATTTTATAAAAAGCACAAGTCCAGTTGGTCCTGGTGCTACAACACGAAAGGGTGCATTCCAGGTTGAGCGGCAAAATTCTGAAATCTCATATTATGCAGATGATGAAGATGGGAATCGTAAAAAGTATTCACGGAGGGGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

26.74

Weight (kDa)

7.9

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box_ZFPL1	PF25993	1 - 45	2.1e-21	ZFPL1-like, B-box zinc-binding domain
U-box_ZFPL1	PF25998	53 - 129	6.6e-40	ZFPL1-like, U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14835 AT2G14835
fragaria_vesca	FvH4_2g04180
malus_domestica	MD05G1098600.v1.1 MD10G1104500.v1.1
prunus_persica	Prupe.8G143400_v2.0.a1 Prupe.8G143400_v2.0.a1
pyrus_communis	pycom10g09000
rosa_chinensis	RchiOBHm_Chr6g0253531
rosa_laevigata	RLG00000015003
rosa_multiflora	Rmu_co8219316.1_g000001 Rmu_sc0020812.1_g000003 Rmu_ssc0000079.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211800
rosa_rugosa	Rorug05G0544800 Rorug05G0544900 Rorug05G0545000
rosa_samantha	Rh6AG060000 Rh6BG054000 Rh6CG053700 Rh6DG051300
rosa_wichuraiana	Rw6G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AarI	CACCTGC	1 cut(s)	475
Acc36I	ACCTGC	1 cut(s)	475
AccBSI	CCGCTC	1 cut(s)	670
AciI	CCGC	2 cut(s)	461, 670
AcsI	RAATTY	2 cut(s)	601, 676
AfaI	GTAC	2 cut(s)	112, 143
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	369, 376, 557
AjnI	CCWGG	4 cut(s)	246, 304, 631, 660
AluBI	AGCT	3 cut(s)	34, 290, 383
AluI	AGCT	3 cut(s)	34, 290, 383
Alw21I	GWGCWC	3 cut(s)	51, 85, 183
Alw44I	GTGCAC	1 cut(s)	47
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	2 cut(s)	149, 326
ApaLI	GTGCAC	1 cut(s)	47
ApoI	RAATTY	2 cut(s)	601, 676
AspS9I	GGNCC	2 cut(s)	584, 629
AsuHPI	GGTGA	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	584, 629
BaeGI	GKGCMC	1 cut(s)	51
Bbv12I	GWGCWC	3 cut(s)	51, 85, 183
BccI	CCATC	1 cut(s)	704
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	4 cut(s)	248, 306, 633, 662
BfaI	CTAG	1 cut(s)	588
BfuAI	ACCTGC	1 cut(s)	475
BisI	GCNGC	1 cut(s)	671
BlsI	GCNGC	1 cut(s)	672
Bme1390I	CCNGG	4 cut(s)	248, 306, 633, 662
Bme18I	GGWCC	2 cut(s)	584, 629
BmgT120I	GGNCC	2 cut(s)	584, 629
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	4 cut(s)	248, 306, 633, 662
BmsI	GCATC	3 cut(s)	100, 362, 472
BpmI	CTGGAG	2 cut(s)	69, 555
Bsa29I	ATCGAT	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	714
BsaWI	WCCGGW	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	5 cut(s)	199, 400, 428, 538, 623
Bse8I	GATNNNNATC	1 cut(s)	714
BseBI	CCWGG	4 cut(s)	248, 306, 633, 662
BseCI	ATCGAT	1 cut(s)	320
BseGI	GGATG	3 cut(s)	314, 353, 424
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	132, 492
BseNI	ACTGG	5 cut(s)	199, 400, 428, 538, 623
BseSI	GKGCMC	1 cut(s)	51
BseYI	CCCAGC	1 cut(s)	286
BshFI	GGCC	2 cut(s)	151, 328
BshVI	ATCGAT	1 cut(s)	320
BsiHKAI	GWGCWC	3 cut(s)	51, 85, 183
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	2 cut(s)	205, 436
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	205, 436
BsmI	GAATGC	2 cut(s)	77, 656
BsnI	GGCC	2 cut(s)	151, 328
Bsp1286I	GDGCHC	3 cut(s)	51, 85, 183
BspACI	CCGC	2 cut(s)	461, 670
BspANI	GGCC	2 cut(s)	151, 328
BspCNI	CTCAG	2 cut(s)	131, 491
BspDI	ATCGAT	1 cut(s)	320
BspLI	GGNNCC	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	475
BsrBI	CCGCTC	1 cut(s)	670
BsrI	ACTGG	5 cut(s)	199, 400, 428, 538, 623
Bst2UI	CCWGG	4 cut(s)	248, 306, 633, 662
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstDEI	CTNAG	2 cut(s)	118, 478
BstF5I	GGATG	3 cut(s)	314, 353, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	4 cut(s)	248, 306, 633, 662
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	4 cut(s)	246, 304, 631, 660
BstSLI	GKGCMC	1 cut(s)	51
Bsu15I	ATCGAT	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	151, 328
BsuTUI	ATCGAT	1 cut(s)	320
BtsCI	GGATG	3 cut(s)	314, 353, 424
BveI	ACCTGC	1 cut(s)	475
CaiI	CAGNNNCTG	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	584, 629
ClaI	ATCGAT	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	111, 142
CviAII	CATG	2 cut(s)	227, 388
CviJI	RGCY	9 cut(s)	26, 34, 151, 198, 214, 290, 328, 383, 399
CviKI_1	RGCY	9 cut(s)	26, 34, 151, 198, 214, 290, 328, 383, 399
CviQI	GTAC	2 cut(s)	111, 142
DdeI	CTNAG	2 cut(s)	118, 478
EciI	GGCGGA	1 cut(s)	450
Eco47I	GGWCC	2 cut(s)	584, 629
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	4 cut(s)	246, 304, 631, 660
EcoT22I	ATGCAT	1 cut(s)	77
FaeI	CATG	2 cut(s)	230, 391
FaqI	GGGAC	2 cut(s)	205, 436
FatI	CATG	2 cut(s)	226, 387
Fnu4HI	GCNGC	1 cut(s)	671
FokI	GGATG	3 cut(s)	321, 340, 411
Fsp4HI	GCNGC	1 cut(s)	671
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	1 cut(s)	671
GsaI	CCCAGC	1 cut(s)	290
GsuI	CTGGAG	2 cut(s)	69, 555
HaeIII	GGCC	2 cut(s)	151, 328
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	2 cut(s)	230, 391
HinfI	GANTC	4 cut(s)	106, 347, 449, 715
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	121, 481, 682
Hpy188III	TCNNGA	2 cut(s)	86, 262
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	4 cut(s)	16, 282, 370, 575
HpyCH4V	TGCA	9 cut(s)	12, 18, 49, 75, 391, 485, 503, 656, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	2 cut(s)	118, 478
Hsp92II	CATG	2 cut(s)	230, 391
LmnI	GCTCC	2 cut(s)	88, 536
LweI	GCATC	3 cut(s)	100, 362, 472
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	2 cut(s)	252, 559
MbiI	CCGCTC	1 cut(s)	670
MboII	GAAGA	2 cut(s)	504, 719
MhlI	GDGCHC	3 cut(s)	51, 85, 183
MluCI	AATT	2 cut(s)	601, 676
MlyI	GAGTC	1 cut(s)	458
MnlI	CCTC	6 cut(s)	162, 181, 339, 487, 517, 729
Mph1103I	ATGCAT	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	322
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	4 cut(s)	248, 306, 633, 662
Mva1269I	GAATGC	2 cut(s)	77, 656
MvaI	CCWGG	4 cut(s)	248, 306, 633, 662
MwoI	GCNNNNNNNGC	1 cut(s)	545
NlaIII	CATG	2 cut(s)	230, 391
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	2 cut(s)	252, 559
NsiI	ATGCAT	1 cut(s)	77
NspI	RCATGY	1 cut(s)	230
PaqCI	CACCTGC	1 cut(s)	475
PciI	ACATGT	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	2 cut(s)	77, 656
PfeI	GAWTC	3 cut(s)	106, 347, 715
PflFI	GACNNNGTC	1 cut(s)	448
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	672
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	584
PscI	ACATGT	1 cut(s)	226
PsiI	TTATAA	1 cut(s)	608
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	4 cut(s)	246, 304, 631, 660
PspFI	CCCAGC	1 cut(s)	286
PspGI	CCWGG	4 cut(s)	246, 304, 631, 660
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	584, 629
PspPPI	RGGWCCY	1 cut(s)	584
PstNI	CAGNNNCTG	1 cut(s)	545
PsyI	GACNNNGTC	1 cut(s)	448
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	2 cut(s)	112, 143
RsaNI	GTAC	2 cut(s)	111, 142
RseI	CAYNNNNRTG	1 cut(s)	322
SatI	GCNGC	1 cut(s)	671
Sau96I	GGNCC	2 cut(s)	584, 629
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	4 cut(s)	248, 306, 633, 662
SduI	GDGCHC	3 cut(s)	51, 85, 183
SetI	ASST	9 cut(s)	36, 57, 177, 292, 385, 469, 509, 586, 666
SfaNI	GCATC	3 cut(s)	100, 362, 472
SinI	GGWCC	2 cut(s)	584, 629
SmiMI	CAYNNNNRTG	1 cut(s)	322
Sse9I	AATT	2 cut(s)	601, 676
SsiI	CCGC	2 cut(s)	461, 670
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	4 cut(s)	246, 304, 631, 660
TaqI	TCGA	4 cut(s)	183, 314, 320, 443
TasI	AATT	2 cut(s)	601, 676
TauI	GCSGC	1 cut(s)	673
TfiI	GAWTC	3 cut(s)	106, 347, 715
TseFI	GTSAC	2 cut(s)	252, 559
Tsp45I	GTSAC	2 cut(s)	252, 559
TspDTI	ATGAA	5 cut(s)	353, 423, 504, 543, 720
TspGWI	ACGGA	1 cut(s)	150
Tth111I	GACNNNGTC	1 cut(s)	448
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	584, 629
XapI	RAATTY	2 cut(s)	601, 676
XceI	RCATGY	1 cut(s)	230
XspI	CTAG	1 cut(s)	588
Zsp2I	ATGCAT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.