Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009444

Physical Location & Seq

Genomic Coordinates Forward (+)

17019689 .. 17025055

Gene Structure 5367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1104500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGTGGTCTGCAAATGCCGCAAGGCTACTAAGCTGTATTGTTTCGTGCACAAGGTTCCGGTTTGCGGAGAATGCATCTGTTCTCCTGAGCATCAAATATGCGTGATTCGTACTTACTCAGAATGGGTAATAGATGGAGAGTATGATTGGCCACCAAAATGCTGCCTCTGTCATGTTGAGCTGGATGAGGGGACTGGCCCTCAAACGACTCGGCTGGGTTGCTTGCATGTAATACATACAAGTTGCCTGGTTTCACATATCAAGAGTTTCCCTTCGCATACTGCACCAGCTGGATATGTTTGTCCTACGTGTTCCACACCGATGTGGCCTCCCAAGAATGTGAAAGATTCAGCATCCTGCCTTCACTCAAAGTTGAAGGAAGCTATCATGCAGGCAAGGCTCGTTCTTGACAATGAGATTATCATAAAACTAACTGGCTTGGAAAAGAACTTGTTTGGAAATCATCCAGTTTCATTGTCGACAGAATCTCGTAGTCCTCCTCCTGCATTTTCCTCATATCCACTTGTTAGTGCATCTTTGAATGGAGGAAGGGACAATAATGCTAGCTCATCCGCAGGAAAAGATGGACCTAACGTAATTGATTTCGCGGCTACAACTGGAGCAGGACCTTCTATACATCCAGTGACAGACATAGTGGAGATAGGAAGTCCTAGTTCGGCAGGGAATTATGTGCAAAGCACGAGTCCGCCTGGTGCTACAACACGAAAGGGTGCATTGCAAGTTGAGCGACAGAACTCTGAAATTTCATATTATGCAGATGATGAAGATGGGAATCGTAAAAAGTATTCACGAAGGGGCCCATTCCGACATAAGTTTCTTAGAGCATTGCTTCCATTCTGGTCAAGTGCGTTGCCAACTCTACCAGTGACTGCACCCCAGCGAAAAGATGGATCAATTGAAAATGATGTCCCAGAAGGTCGTCCCCGACATAAGAAATCATCAAGAATGGATCCAAGAAAAATCCTACTTGTTATAGCAATCATATTAGTGCAACGGGGTCTTGGTGAGGAGATGCCTGAAGACGAGCAGCAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

38.54

Weight (kDa)

8.3

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box_ZFPL1	PF25993	1 - 45	2.5e-21	ZFPL1-like, B-box zinc-binding domain
U-box_ZFPL1	PF25998	53 - 129	2.8e-39	ZFPL1-like, U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14835 AT2G14835
fragaria_vesca	FvH4_2g04180
malus_domestica	MD05G1098600.v1.1 MD10G1104500.v1.1
prunus_persica	Prupe.8G143400_v2.0.a1 Prupe.8G143400_v2.0.a1
pyrus_communis	pycom10g09000
rosa_chinensis	RchiOBHm_Chr6g0253531
rosa_laevigata	RLG00000015003
rosa_multiflora	Rmu_co8219316.1_g000001 Rmu_sc0020812.1_g000003 Rmu_ssc0000079.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211800
rosa_rugosa	Rorug05G0544800 Rorug05G0544900 Rorug05G0545000
rosa_samantha	Rh6AG060000 Rh6BG054000 Rh6CG053700 Rh6DG051300
rosa_wichuraiana	Rw6G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	479
AccII	CGCG	1 cut(s)	608
AciI	CCGC	5 cut(s)	19, 66, 573, 608, 707
AclWI	GGATC	3 cut(s)	919, 965, 978
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	762
AcuI	CTGAAG	1 cut(s)	1059
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	3 cut(s)	376, 541, 920
AjnI	CCWGG	2 cut(s)	246, 709
AleI	CACNNNNGTG	1 cut(s)	322
AluBI	AGCT	5 cut(s)	34, 181, 290, 383, 567
AluI	AGCT	5 cut(s)	34, 181, 290, 383, 567
Alw21I	GWGCWC	1 cut(s)	51
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	3 cut(s)	919, 965, 978
AlwNI	CAGNNNCTG	1 cut(s)	890
AoxI	GGCC	4 cut(s)	149, 196, 326, 817
ApaI	GGGCCC	1 cut(s)	821
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	3 cut(s)	162, 1048, 1051
ApoI	RAATTY	1 cut(s)	762
ArsI	GACNNNNNNTTYG	2 cut(s)	688, 720
AspS9I	GGNCC	5 cut(s)	197, 587, 626, 817, 818
AsuHPI	GGTGA	1 cut(s)	1037
AsuNHI	GCTAGC	1 cut(s)	563
AvaII	GGWCC	2 cut(s)	587, 626
BaeGI	GKGCMC	2 cut(s)	51, 821
BalI	TGGCCA	1 cut(s)	151
BamHI	GGATCC	1 cut(s)	970
BanII	GRGCYC	1 cut(s)	821
BauI	CACGAG	1 cut(s)	700
BbsI	GAAGAC	1 cut(s)	1047
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	4 cut(s)	128, 578, 782, 902
BciT130I	CCWGG	2 cut(s)	248, 711
BfaI	CTAG	2 cut(s)	564, 672
BisI	GCNGC	5 cut(s)	19, 163, 609, 1049, 1052
BlsI	GCNGC	5 cut(s)	20, 164, 610, 1050, 1053
Bme1390I	CCNGG	2 cut(s)	248, 711
Bme18I	GGWCC	2 cut(s)	587, 626
BmgT120I	GGNCC	5 cut(s)	197, 587, 626, 817, 818
BmiI	GGNNCC	4 cut(s)	57, 818, 819, 972
BmrFI	CCNGG	2 cut(s)	248, 711
BmsI	GCATC	5 cut(s)	84, 100, 362, 542, 1023
BmtI	GCTAGC	1 cut(s)	567
BpiI	GAAGAC	1 cut(s)	1047
BpmI	CTGGAG	1 cut(s)	639
Bpu10I	CCTNAGC	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	792
BsaWI	WCCGGW	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	6 cut(s)	199, 439, 467, 622, 641, 884
Bse3DI	GCAATG	2 cut(s)	734, 845
Bse8I	GATNNNNATC	1 cut(s)	792
BseBI	CCWGG	2 cut(s)	248, 711
BseGI	GGATG	5 cut(s)	190, 353, 463, 569, 637
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	2 cut(s)	734, 845
BseMII	CTCAG	2 cut(s)	78, 132
BseNI	ACTGG	6 cut(s)	199, 439, 467, 622, 641, 884
BseRI	GAGGAG	2 cut(s)	489, 1043
BseSI	GKGCMC	2 cut(s)	51, 821
BseXI	GCAGC	1 cut(s)	149
BseYI	CCCAGC	2 cut(s)	214, 897
BsgI	GTGCAG	2 cut(s)	267, 876
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	4 cut(s)	151, 198, 328, 819
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	4 cut(s)	205, 566, 914, 927
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmFI	GGGAC	4 cut(s)	205, 566, 914, 927
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	4 cut(s)	151, 198, 328, 819
Bsp120I	GGGCCC	1 cut(s)	817
Bsp1286I	GDGCHC	2 cut(s)	51, 821
Bsp143I	GATC	2 cut(s)	911, 970
BspACI	CCGC	5 cut(s)	19, 66, 573, 608, 707
BspANI	GGCC	4 cut(s)	151, 198, 328, 819
BspCNI	CTCAG	2 cut(s)	79, 131
BspFNI	CGCG	1 cut(s)	608
BspLI	GGNNCC	4 cut(s)	57, 818, 819, 972
BspOI	GCTAGC	1 cut(s)	567
BspPI	GGATC	3 cut(s)	919, 965, 978
BsrDI	GCAATG	2 cut(s)	734, 845
BsrI	ACTGG	6 cut(s)	199, 439, 467, 622, 641, 884
BssMI	GATC	2 cut(s)	911, 970
BssSI	CACGAG	1 cut(s)	700
Bst2BI	CACGAG	1 cut(s)	700
Bst2UI	CCWGG	2 cut(s)	248, 711
BstBAI	YACGTR	1 cut(s)	309
BstC8I	GCNNGC	3 cut(s)	224, 393, 565
BstDEI	CTNAG	4 cut(s)	30, 87, 118, 839
BstF5I	GGATG	5 cut(s)	190, 353, 463, 569, 637
BstFNI	CGCG	1 cut(s)	608
BstKTI	GATC	2 cut(s)	914, 973
BstMBI	GATC	2 cut(s)	911, 970
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 72, 397, 745
BstNI	CCWGG	2 cut(s)	248, 711
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	246, 709
BstSLI	GKGCMC	2 cut(s)	51, 821
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	1047
BstX2I	RGATCY	1 cut(s)	970
BstYI	RGATCY	1 cut(s)	970
BsuRI	GGCC	4 cut(s)	151, 198, 328, 819
BtsCI	GGATG	5 cut(s)	190, 353, 463, 569, 637
BtsIMutI	CAGTG	2 cut(s)	648, 891
Cac8I	GCNNGC	3 cut(s)	224, 393, 565
CaiI	CAGNNNCTG	1 cut(s)	890
Cfr13I	GGNCC	5 cut(s)	197, 587, 626, 817, 818
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	3 cut(s)	173, 227, 388
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	4 cut(s)	30, 87, 118, 839
DpnI	GATC	2 cut(s)	913, 972
DpnII	GATC	2 cut(s)	911, 970
EaeI	YGGCCR	1 cut(s)	149
EciI	GGCGGA	1 cut(s)	696
Eco24I	GRGCYC	1 cut(s)	821
Eco47I	GGWCC	2 cut(s)	587, 626
Eco57I	CTGAAG	1 cut(s)	1059
EcoO109I	RGGNCCY	2 cut(s)	626, 817
EcoRII	CCWGG	2 cut(s)	246, 709
EcoT22I	ATGCAT	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	821
FaeI	CATG	3 cut(s)	176, 230, 391
FaqI	GGGAC	4 cut(s)	205, 566, 914, 927
FatI	CATG	3 cut(s)	172, 226, 387
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	5 cut(s)	19, 163, 609, 1049, 1052
FokI	GGATG	5 cut(s)	197, 340, 450, 556, 624
FriOI	GRGCYC	1 cut(s)	821
Fsp4HI	GCNGC	5 cut(s)	19, 163, 609, 1049, 1052
FspBI	CTAG	2 cut(s)	564, 672
GluI	GCNGC	5 cut(s)	19, 163, 609, 1049, 1052
GsaI	CCCAGC	2 cut(s)	218, 901
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	4 cut(s)	151, 198, 328, 819
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	3 cut(s)	176, 230, 391
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	6 cut(s)	106, 208, 347, 485, 703, 793
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	1037
Hpy166II	GTNNAC	2 cut(s)	49, 480
Hpy188I	TCNGA	3 cut(s)	121, 760, 827
Hpy188III	TCNNGA	5 cut(s)	86, 262, 407, 810, 963
Hpy8I	GTNNAC	2 cut(s)	49, 480
HpyAV	CCTTC	7 cut(s)	282, 370, 371, 543, 639, 807, 929
HpyCH4IV	ACGT	2 cut(s)	308, 594
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 72, 397, 745
HpyF3I	CTNAG	4 cut(s)	30, 87, 118, 839
HpySE526I	ACGT	2 cut(s)	308, 594
Hsp92II	CATG	3 cut(s)	176, 230, 391
Kzo9I	GATC	2 cut(s)	911, 970
LmnI	GCTCC	1 cut(s)	620
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	5 cut(s)	84, 100, 362, 542, 1023
MaeI	CTAG	2 cut(s)	564, 672
MaeII	ACGT	2 cut(s)	308, 594
MaeIII	GTNAC	2 cut(s)	643, 886
MalI	GATC	2 cut(s)	913, 972
MboI	GATC	2 cut(s)	911, 970
MboII	GAAGA	2 cut(s)	797, 1052
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	1 cut(s)	970
MhlI	GDGCHC	2 cut(s)	51, 821
MlsI	TGGCCA	1 cut(s)	151
MluCI	AATT	4 cut(s)	597, 685, 762, 915
MluNI	TGGCCA	1 cut(s)	151
MlyI	GAGTC	2 cut(s)	202, 712
MmeI	TCCRAC	1 cut(s)	850
MnlI	CCTC	9 cut(s)	176, 181, 210, 339, 507, 510, 523, 539, 1021
Mox20I	TGGCCA	1 cut(s)	151
Mph1103I	ATGCAT	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	151
MslI	CAYNNNNRTG	4 cut(s)	157, 320, 322, 1007
Msp20I	TGGCCA	1 cut(s)	151
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	248, 711
MunI	CAATTG	1 cut(s)	915
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	2 cut(s)	248, 711
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	4 cut(s)	18, 72, 397, 745
NdeII	GATC	2 cut(s)	911, 970
NheI	GCTAGC	1 cut(s)	563
NlaIII	CATG	3 cut(s)	176, 230, 391
NlaIV	GGNNCC	4 cut(s)	57, 818, 819, 972
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	643, 886
NsiI	ATGCAT	1 cut(s)	77
NspI	RCATGY	1 cut(s)	230
OliI	CACNNNNGTG	1 cut(s)	322
PctI	GAATGC	1 cut(s)	77
PfeI	GAWTC	4 cut(s)	106, 347, 485, 793
PkrI	GCNGC	5 cut(s)	20, 164, 610, 1050, 1053
PleI	GAGTC	2 cut(s)	202, 711
PpsI	GAGTC	2 cut(s)	202, 711
Ppu21I	YACGTR	1 cut(s)	309
PpuMI	RGGWCCY	1 cut(s)	626
Psp5II	RGGWCCY	1 cut(s)	626
Psp6I	CCWGG	2 cut(s)	246, 709
PspFI	CCCAGC	2 cut(s)	214, 897
PspGI	CCWGG	2 cut(s)	246, 709
PspN4I	GGNNCC	4 cut(s)	57, 818, 819, 972
PspOMI	GGGCCC	1 cut(s)	817
PspPI	GGNCC	5 cut(s)	197, 587, 626, 817, 818
PspPPI	RGGWCCY	1 cut(s)	626
PstNI	CAGNNNCTG	1 cut(s)	890
PsuI	RGATCY	1 cut(s)	970
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	4 cut(s)	157, 320, 322, 1007
SalI	GTCGAC	1 cut(s)	478
SatI	GCNGC	5 cut(s)	19, 163, 609, 1049, 1052
Sau3AI	GATC	2 cut(s)	911, 970
Sau96I	GGNCC	5 cut(s)	197, 587, 626, 817, 818
SchI	GAGTC	2 cut(s)	202, 712
ScrFI	CCNGG	2 cut(s)	248, 711
SduI	GDGCHC	2 cut(s)	51, 821
SfaNI	GCATC	5 cut(s)	84, 100, 362, 542, 1023
SinI	GGWCC	2 cut(s)	587, 626
SmiMI	CAYNNNNRTG	4 cut(s)	157, 320, 322, 1007
Sse9I	AATT	4 cut(s)	597, 685, 762, 915
SsiI	CCGC	5 cut(s)	19, 66, 573, 608, 707
SspMI	CTAG	2 cut(s)	564, 672
StyD4I	CCNGG	2 cut(s)	246, 709
TaiI	ACGT	2 cut(s)	311, 597
TaqI	TCGA	1 cut(s)	479
TasI	AATT	4 cut(s)	597, 685, 762, 915
TauI	GCSGC	2 cut(s)	21, 611
TfiI	GAWTC	4 cut(s)	106, 347, 485, 793
TscAI	CASTG	2 cut(s)	648, 891
TseFI	GTSAC	2 cut(s)	643, 886
TseI	GCWGC	3 cut(s)	162, 1048, 1051
Tsp45I	GTSAC	2 cut(s)	643, 886
TspDTI	ATGAA	3 cut(s)	462, 756, 798
TspRI	CASTG	2 cut(s)	648, 891
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	587, 626
XapI	RAATTY	1 cut(s)	762
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	905
XmiI	GTMKAC	1 cut(s)	479
XspI	CTAG	2 cut(s)	564, 672
Zsp2I	ATGCAT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.