Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009444

Physical Location & Seq

Genomic Coordinates Reverse (-)

62200824 .. 62206762

Gene Structure 5939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00211800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTGGTCTGCAAATGCAAGAAGGCTACCAAGCTGTACTGTTTCGTGCACAAGGTTCCGGTTTGTGGAGAATGCATTTGTGCTCCCGAGCATCAAATATGTGTGATTCGTACATACTCAGAATGGGTGATAGACGGAGAGTACGATTGGCCTCCTAAATGCTGTCAATGTCAGGTTGTGCTCGATGAGGGGACTGGCTCTCAAACGACACGGCTTGGTTGCTTACATGTTATACATACAAGTTGCCTGGTGTCACATATCAAGAGTTTCCCTTCGCATACTGCCCCAGCTGGATATGTTTGTCCTGGATGTTCCACATCGATATGGCCTCCCAAGAATGTGAAAGATTCAGCATCCTGCTTTCATTCAAAGTTGAAGGAAGCTATCATGCAGACTGGCTTGGAAAAGAACTTGTTTGGAAATCATCCAGTTTCATTGTCATCGACAGAGTCCCGTAGTCCGCCACCTGCATTTTCCTCAGATGCAGGGCGGGGGAATATTGCAACCTCATCTTCATTAGCAAAAGATGAAACTGGAGCAGGGTCTGCTATACTTCAAGTGACAGACATAGTGGAGATAGAAGGGCCTAGTTCAGCAGGGAATTTTATAAAAAGCACAAGTCCAGTTGGTCCTGGTGCTACAACACGAAAGGGTGCATTCCAGGTTGAGCGGCAAAATTCTGAAATCTCATATTATGCAGATGATGAAGATGGGAATCGTAAAAAGTATTCACGGAGGGGCCCATTCCGACACAAGTTTCTTAGAGCATTGCTTCCATTCTGGGGAAGTTCATTGCCAATTCTACCAGTGACTGCACCCCAGCGGAAAGATGGATCAATTGCAACAGATGCACCGGAAGGTCGTACCAGACATCAAAAATCATCGAGAATGGATCCAAGAAAAATACTTCTTGTTATAGCAATCATGGCATGCATGGCAACTATGGGTATTTTGTATTATAGATTAGTGCAACGGGGTCTTGGCGAGGAGACTCCTAATGACGAGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

36.78

Weight (kDa)

8.63

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box_ZFPL1	PF25993	1 - 45	3.3e-21	ZFPL1-like, B-box zinc-binding domain
U-box_ZFPL1	PF25998	53 - 129	2.5e-39	ZFPL1-like, U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14835 AT2G14835
fragaria_vesca	FvH4_2g04180
malus_domestica	MD05G1098600.v1.1 MD10G1104500.v1.1
prunus_persica	Prupe.8G143400_v2.0.a1 Prupe.8G143400_v2.0.a1
pyrus_communis	pycom10g09000
rosa_chinensis	RchiOBHm_Chr6g0253531
rosa_laevigata	RLG00000015003
rosa_multiflora	Rmu_co8219316.1_g000001 Rmu_sc0020812.1_g000003 Rmu_ssc0000079.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211800
rosa_rugosa	Rorug05G0544800 Rorug05G0544900 Rorug05G0545000
rosa_samantha	Rh6AG060000 Rh6BG054000 Rh6CG053700 Rh6DG051300
rosa_wichuraiana	Rw6G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AarI	CACCTGC	1 cut(s)	475
Acc36I	ACCTGC	1 cut(s)	475
AccBSI	CCGCTC	1 cut(s)	670
AciI	CCGC	4 cut(s)	461, 490, 670, 823
AclWI	GGATC	3 cut(s)	841, 887, 900
AcsI	RAATTY	2 cut(s)	601, 676
AfaI	GTAC	4 cut(s)	38, 112, 143, 865
AfiI	CCNNNNNNNGG	2 cut(s)	65, 782
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	369, 376, 557
AjnI	CCWGG	4 cut(s)	246, 304, 631, 660
AluBI	AGCT	3 cut(s)	34, 290, 383
AluI	AGCT	3 cut(s)	34, 290, 383
Alw21I	GWGCWC	3 cut(s)	51, 85, 183
Alw26I	GTCTC	1 cut(s)	983
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	3 cut(s)	841, 887, 900
AlwNI	CAGNNNCTG	2 cut(s)	545, 812
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	4 cut(s)	149, 326, 584, 739
ApaI	GGGCCC	1 cut(s)	743
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	1006
ApoI	RAATTY	2 cut(s)	601, 676
AspS9I	GGNCC	4 cut(s)	584, 629, 739, 740
AsuHPI	GGTGA	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	629
BaeGI	GKGCMC	2 cut(s)	51, 743
BamHI	GGATCC	1 cut(s)	892
BanII	GRGCYC	1 cut(s)	743
Bbv12I	GWGCWC	3 cut(s)	51, 85, 183
BccI	CCATC	2 cut(s)	704, 824
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	4 cut(s)	248, 306, 633, 662
BcoDI	GTCTC	1 cut(s)	983
BfaI	CTAG	1 cut(s)	588
BfuAI	ACCTGC	1 cut(s)	475
BisI	GCNGC	2 cut(s)	671, 1007
BlsI	GCNGC	2 cut(s)	672, 1008
Bme1390I	CCNGG	4 cut(s)	248, 306, 633, 662
Bme18I	GGWCC	1 cut(s)	629
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	4 cut(s)	584, 629, 739, 740
BmiI	GGNNCC	4 cut(s)	57, 740, 741, 894
BmrFI	CCNGG	4 cut(s)	248, 306, 633, 662
BmsI	GCATC	4 cut(s)	100, 362, 472, 838
BpmI	CTGGAG	1 cut(s)	555
Bsa29I	ATCGAT	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	714
BsaWI	WCCGGW	2 cut(s)	58, 853
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 782
Bse1I	ACTGG	6 cut(s)	199, 400, 428, 538, 623, 806
Bse3DI	GCAATG	2 cut(s)	767, 791
Bse8I	GATNNNNATC	1 cut(s)	714
BseBI	CCWGG	4 cut(s)	248, 306, 633, 662
BseCI	ATCGAT	1 cut(s)	320
BseGI	GGATG	3 cut(s)	314, 353, 424
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	2 cut(s)	65, 782
BseMI	GCAATG	2 cut(s)	767, 791
BseMII	CTCAG	2 cut(s)	132, 492
BseNI	ACTGG	6 cut(s)	199, 400, 428, 538, 623, 806
BseRI	GAGGAG	1 cut(s)	1001
BseSI	GKGCMC	2 cut(s)	51, 743
BseYI	CCCAGC	2 cut(s)	286, 819
BsgI	GTGCAG	1 cut(s)	798
BshFI	GGCC	4 cut(s)	151, 328, 586, 741
BshVI	ATCGAT	1 cut(s)	320
BsiHKAI	GWGCWC	3 cut(s)	51, 85, 183
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	59, 854
BslFI	GGGAC	2 cut(s)	205, 436
BslI	CCNNNNNNNGG	2 cut(s)	65, 782
BsmAI	GTCTC	1 cut(s)	983
BsmFI	GGGAC	2 cut(s)	205, 436
BsmI	GAATGC	2 cut(s)	77, 656
BsnI	GGCC	4 cut(s)	151, 328, 586, 741
BsoBI	CYCGRG	1 cut(s)	86
Bsp120I	GGGCCC	1 cut(s)	739
Bsp1286I	GDGCHC	4 cut(s)	51, 85, 183, 743
Bsp143I	GATC	2 cut(s)	833, 892
BspACI	CCGC	4 cut(s)	461, 490, 670, 823
BspANI	GGCC	4 cut(s)	151, 328, 586, 741
BspCNI	CTCAG	2 cut(s)	131, 491
BspDI	ATCGAT	1 cut(s)	320
BspLI	GGNNCC	4 cut(s)	57, 740, 741, 894
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	3 cut(s)	841, 887, 900
BsrBI	CCGCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	767, 791
BsrI	ACTGG	6 cut(s)	199, 400, 428, 538, 623, 806
BssMI	GATC	2 cut(s)	833, 892
Bst2UI	CCWGG	4 cut(s)	248, 306, 633, 662
Bst4CI	ACNGT	1 cut(s)	41
BstAPI	GCANNNNNTGC	2 cut(s)	545, 848
BstC8I	GCNNGC	1 cut(s)	931
BstDEI	CTNAG	3 cut(s)	118, 478, 761
BstF5I	GGATG	3 cut(s)	314, 353, 424
BstKTI	GATC	2 cut(s)	836, 895
BstMAI	GTCTC	1 cut(s)	983
BstMBI	GATC	2 cut(s)	833, 892
BstMWI	GCNNNNNNNGC	4 cut(s)	545, 848, 926, 935
BstNI	CCWGG	4 cut(s)	248, 306, 633, 662
BstNSI	RCATGY	2 cut(s)	230, 933
BstSCI	CCNGG	4 cut(s)	246, 304, 631, 660
BstSLI	GKGCMC	2 cut(s)	51, 743
BstX2I	RGATCY	1 cut(s)	892
BstYI	RGATCY	1 cut(s)	892
Bsu15I	ATCGAT	1 cut(s)	320
BsuRI	GGCC	4 cut(s)	151, 328, 586, 741
BsuTUI	ATCGAT	1 cut(s)	320
BtsCI	GGATG	3 cut(s)	314, 353, 424
BtsIMutI	CAGTG	1 cut(s)	813
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	931
CaiI	CAGNNNCTG	2 cut(s)	545, 812
Cfr13I	GGNCC	4 cut(s)	584, 629, 739, 740
ClaI	ATCGAT	1 cut(s)	320
Csp6I	GTAC	4 cut(s)	37, 111, 142, 864
CviAII	CATG	5 cut(s)	227, 388, 925, 930, 934
CviQI	GTAC	4 cut(s)	37, 111, 142, 864
DdeI	CTNAG	3 cut(s)	118, 478, 761
DpnI	GATC	2 cut(s)	835, 894
DpnII	GATC	2 cut(s)	833, 892
EciI	GGCGGA	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	743
Eco47I	GGWCC	1 cut(s)	629
Eco88I	CYCGRG	1 cut(s)	86
EcoO109I	RGGNCCY	2 cut(s)	584, 739
EcoRII	CCWGG	4 cut(s)	246, 304, 631, 660
EcoT22I	ATGCAT	2 cut(s)	77, 935
EcoT38I	GRGCYC	1 cut(s)	743
FaeI	CATG	5 cut(s)	230, 391, 928, 933, 937
FaqI	GGGAC	2 cut(s)	205, 436
FatI	CATG	5 cut(s)	226, 387, 924, 929, 933
FauI	CCCGC	1 cut(s)	483
Fnu4HI	GCNGC	2 cut(s)	671, 1007
FokI	GGATG	3 cut(s)	321, 340, 411
FriOI	GRGCYC	1 cut(s)	743
Fsp4HI	GCNGC	2 cut(s)	671, 1007
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	2 cut(s)	671, 1007
GsaI	CCCAGC	2 cut(s)	290, 823
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	4 cut(s)	151, 328, 586, 741
HapII	CCGG	2 cut(s)	59, 854
Hin1II	CATG	5 cut(s)	230, 391, 928, 933, 937
HinfI	GANTC	5 cut(s)	106, 347, 449, 715, 991
HpaII	CCGG	2 cut(s)	59, 854
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	4 cut(s)	121, 481, 682, 749
Hpy188III	TCNNGA	3 cut(s)	86, 262, 885
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	5 cut(s)	16, 282, 370, 575, 851
HpyCH4III	ACNGT	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	4 cut(s)	545, 848, 926, 935
HpyF3I	CTNAG	3 cut(s)	118, 478, 761
Hsp92II	CATG	5 cut(s)	230, 391, 928, 933, 937
Kzo9I	GATC	2 cut(s)	833, 892
LmnI	GCTCC	2 cut(s)	88, 536
LweI	GCATC	4 cut(s)	100, 362, 472, 838
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	3 cut(s)	252, 559, 808
MalI	GATC	2 cut(s)	835, 894
MbiI	CCGCTC	1 cut(s)	670
MboI	GATC	2 cut(s)	833, 892
MboII	GAAGA	2 cut(s)	504, 719
MfeI	CAATTG	1 cut(s)	837
MflI	RGATCY	1 cut(s)	892
MhlI	GDGCHC	4 cut(s)	51, 85, 183, 743
MluCI	AATT	4 cut(s)	601, 676, 798, 837
MlyI	GAGTC	2 cut(s)	458, 985
MmeI	TCCRAC	1 cut(s)	772
MnlI	CCTC	7 cut(s)	162, 181, 339, 487, 517, 729, 979
Mph1103I	ATGCAT	2 cut(s)	77, 935
MslI	CAYNNNNRTG	1 cut(s)	322
MspA1I	CMGCKG	2 cut(s)	290, 823
MspI	CCGG	2 cut(s)	59, 854
MspR9I	CCNGG	4 cut(s)	248, 306, 633, 662
MunI	CAATTG	1 cut(s)	837
Mva1269I	GAATGC	2 cut(s)	77, 656
MvaI	CCWGG	4 cut(s)	248, 306, 633, 662
MwoI	GCNNNNNNNGC	4 cut(s)	545, 848, 926, 935
NdeII	GATC	2 cut(s)	833, 892
NlaIII	CATG	5 cut(s)	230, 391, 928, 933, 937
NlaIV	GGNNCC	4 cut(s)	57, 740, 741, 894
NmuCI	GTSAC	3 cut(s)	252, 559, 808
NsiI	ATGCAT	2 cut(s)	77, 935
NspI	RCATGY	2 cut(s)	230, 933
PaeI	GCATGC	1 cut(s)	933
PaqCI	CACCTGC	1 cut(s)	475
PciI	ACATGT	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	2 cut(s)	77, 656
PfeI	GAWTC	3 cut(s)	106, 347, 715
PflFI	GACNNNGTC	1 cut(s)	448
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	672, 1008
PleI	GAGTC	2 cut(s)	457, 985
PpsI	GAGTC	2 cut(s)	457, 985
PscI	ACATGT	1 cut(s)	226
PsiI	TTATAA	1 cut(s)	608
Psp6I	CCWGG	4 cut(s)	246, 304, 631, 660
PspFI	CCCAGC	2 cut(s)	286, 819
PspGI	CCWGG	4 cut(s)	246, 304, 631, 660
PspN4I	GGNNCC	4 cut(s)	57, 740, 741, 894
PspOMI	GGGCCC	1 cut(s)	739
PspPI	GGNCC	4 cut(s)	584, 629, 739, 740
PstNI	CAGNNNCTG	2 cut(s)	545, 812
PsuI	RGATCY	1 cut(s)	892
PsyI	GACNNNGTC	1 cut(s)	448
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	4 cut(s)	38, 112, 143, 865
RsaNI	GTAC	4 cut(s)	37, 111, 142, 864
RseI	CAYNNNNRTG	1 cut(s)	322
SatI	GCNGC	2 cut(s)	671, 1007
Sau3AI	GATC	2 cut(s)	833, 892
Sau96I	GGNCC	4 cut(s)	584, 629, 739, 740
SchI	GAGTC	2 cut(s)	458, 985
ScrFI	CCNGG	4 cut(s)	248, 306, 633, 662
SduI	GDGCHC	4 cut(s)	51, 85, 183, 743
SetI	ASST	9 cut(s)	36, 57, 177, 292, 385, 469, 509, 666, 862
SfaNI	GCATC	4 cut(s)	100, 362, 472, 838
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	322
SphI	GCATGC	1 cut(s)	933
Sse9I	AATT	4 cut(s)	601, 676, 798, 837
SsiI	CCGC	4 cut(s)	461, 490, 670, 823
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	4 cut(s)	246, 304, 631, 660
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	4 cut(s)	183, 320, 443, 884
TasI	AATT	4 cut(s)	601, 676, 798, 837
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	1 cut(s)	673
TfiI	GAWTC	3 cut(s)	106, 347, 715
TscAI	CASTG	1 cut(s)	813
TseFI	GTSAC	3 cut(s)	252, 559, 808
TseI	GCWGC	1 cut(s)	1006
Tsp45I	GTSAC	3 cut(s)	252, 559, 808
TspDTI	ATGAA	6 cut(s)	353, 423, 504, 543, 720, 780
TspGWI	ACGGA	2 cut(s)	150, 748
TspRI	CASTG	1 cut(s)	813
Tth111I	GACNNNGTC	1 cut(s)	448
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	629
XapI	RAATTY	2 cut(s)	601, 676
XceI	RCATGY	2 cut(s)	230, 933
XcmI	CCANNNNNNNNNTGG	1 cut(s)	827
XspI	CTAG	1 cut(s)	588
Zsp2I	ATGCAT	2 cut(s)	77, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.