Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009444

Physical Location & Seq

Genomic Coordinates Forward (+)

16026790 .. 16032887

Gene Structure 6098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G143400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGTGGTCTGCAAATGCCGCAAGGCTACCAAGCTGTATTGTTTCGTGCACAAGGTTCCAGTTTGTGGAGAATGCATCTGTTCTCCCGAGCACCAAATATGCGTGGTTCGTACTTACTCAGAGTGGGTAATAGATGGAGAGTATGATTGGCCTCCAAAATGCTGCCTCTGTCAGGTTGCACTTGATGAGGGGACTGGCTCTCAAACGACTCGGCTAGGTTGCTTGCATGTTATACATACAAGTTGCCTGGTTTCACATATCAAGAGTTTCCCTTCTCATACTGCACCAGCTGGATATGTTTGTCCTACATGTAACACATCGATATGGCCTCCCAAGAATGTGAAAGATTCAGCATCTCGCCTCCATTCAAAGTTGAAGGAAGCTATCACGCAGACTGGCTTGGAAAAGAACTTGTTTGGAAATCATCCAGTTTCATTGTTATCGACAGAATCCCGTAGTCCTCCGCCTGCATTTTCCTCAGACCCACTTATTAATGCATCTTTGAATGGAGGCAGGGAAATTAATGCAAGCTCATCAGCAGCAAAAGATGAAACTAACATAATTGATTTCTCAATAGAAGCAGGATCTTCTATACTTCCAGTGACGGACATAGTGGAGATAGAAGGTCCTATTGCAGCAGGGAATTTTGTGAAAAGCACAAGTCCTGTAGGTCCTGGTGCTACAACACGAAAGGGTGCATTCCAAGTTGAGCGACAAAACTCTGAAATCTCATATTATGCAGATGATGAAGATGGGAATCGCAAAAAGTACTCACGAAGGGGTCCATTCCGACATAAGTTTCTAAGAGCATTGCTTCCGTTCTGGTCAACTGCATTGCCAACTCTACCAGTGACTGCACCCCAGCGGAAAGATGGATCAATTGCAAATGATGTCCCCGAGGGTCGTGCCCGTCATCAAAGATCATCAAGAATGGATCCAAGAAAAATCCTTCTTGTGATAGCAATCATGGCATGCATGGCGACTATGGGTATTTTGTATTACAGATTAGTGCAACGGGGTTTTGGTGATGAGATACCTGAAAACGAGCAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

352

Amino Acids

38.55

Weight (kDa)

8.31

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14835 AT2G14835
fragaria_vesca	FvH4_2g04180
malus_domestica	MD05G1098600.v1.1 MD10G1104500.v1.1
prunus_persica	Prupe.8G143400_v2.0.a1 Prupe.8G143400_v2.0.a1
pyrus_communis	pycom10g09000
rosa_chinensis	RchiOBHm_Chr6g0253531
rosa_laevigata	RLG00000015003
rosa_multiflora	Rmu_co8219316.1_g000001 Rmu_sc0020812.1_g000003 Rmu_ssc0000079.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211800
rosa_rugosa	Rorug05G0544800 Rorug05G0544900 Rorug05G0545000
rosa_samantha	Rh6AG060000 Rh6BG054000 Rh6CG053700 Rh6DG051300
rosa_wichuraiana	Rw6G005360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AciI	CCGC	3 cut(s)	19, 464, 865
AclWI	GGATC	4 cut(s)	592, 883, 929, 942
AcsI	RAATTY	1 cut(s)	643
AfaI	GTAC	2 cut(s)	112, 770
AfiI	CCNNNNNNNGG	2 cut(s)	65, 172
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	3 cut(s)	369, 376, 505
AjnI	CCWGG	2 cut(s)	246, 673
AluBI	AGCT	4 cut(s)	34, 290, 383, 531
AluI	AGCT	4 cut(s)	34, 290, 383, 531
Alw21I	GWGCWC	2 cut(s)	51, 93
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	4 cut(s)	592, 883, 929, 942
AlwNI	CAGNNNCTG	1 cut(s)	854
Ama87I	CYCGRG	2 cut(s)	86, 896
AoxI	GGCC	2 cut(s)	149, 326
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	3 cut(s)	162, 539, 635
ApoI	RAATTY	1 cut(s)	643
AseI	ATTAAT	2 cut(s)	492, 522
AspS9I	GGNCC	3 cut(s)	626, 671, 782
AsuHPI	GGTGA	1 cut(s)	1037
AvaI	CYCGRG	2 cut(s)	86, 896
AvaII	GGWCC	3 cut(s)	626, 671, 782
BaeGI	GKGCMC	2 cut(s)	51, 910
BamHI	GGATCC	1 cut(s)	934
Bbv12I	GWGCWC	2 cut(s)	51, 93
BbvI	GCAGC	3 cut(s)	149, 551, 647
BccI	CCATC	3 cut(s)	128, 746, 866
BcgI	CGANNNNNNTGC	2 cut(s)	887, 921
BciT130I	CCWGG	2 cut(s)	248, 675
BfaI	CTAG	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	666
BisI	GCNGC	4 cut(s)	19, 163, 540, 636
BlsI	GCNGC	4 cut(s)	20, 164, 541, 637
BmcAI	AGTACT	1 cut(s)	770
Bme1390I	CCNGG	2 cut(s)	248, 675
Bme18I	GGWCC	3 cut(s)	626, 671, 782
BmeT110I	CYCGRG	2 cut(s)	86, 896
BmgT120I	GGNCC	3 cut(s)	626, 671, 782
BmiI	GGNNCC	3 cut(s)	57, 783, 936
BmrFI	CCNGG	2 cut(s)	248, 675
BmsI	GCATC	3 cut(s)	84, 362, 506
Bsa29I	ATCGAT	1 cut(s)	320
BsaBI	GATNNNNATC	2 cut(s)	756, 962
BsaJI	CCNNGG	1 cut(s)	897
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 172
Bse1I	ACTGG	6 cut(s)	59, 199, 400, 428, 599, 848
Bse3DI	GCAATG	2 cut(s)	809, 833
Bse8I	GATNNNNATC	2 cut(s)	756, 962
BseBI	CCWGG	2 cut(s)	248, 675
BseCI	ATCGAT	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	897
BseGI	GGATG	1 cut(s)	424
BseJI	GATNNNNATC	2 cut(s)	756, 962
BseLI	CCNNNNNNNGG	2 cut(s)	65, 172
BseMI	GCAATG	2 cut(s)	809, 833
BseMII	CTCAG	2 cut(s)	132, 492
BseNI	ACTGG	6 cut(s)	59, 199, 400, 428, 599, 848
BseSI	GKGCMC	2 cut(s)	51, 910
BseXI	GCAGC	3 cut(s)	149, 551, 647
BseYI	CCCAGC	1 cut(s)	861
BsgI	GTGCAG	2 cut(s)	267, 840
BshFI	GGCC	2 cut(s)	151, 328
BshVI	ATCGAT	1 cut(s)	320
BsiHKAI	GWGCWC	2 cut(s)	51, 93
BsiHKCI	CYCGRG	2 cut(s)	86, 896
BslFI	GGGAC	2 cut(s)	205, 878
BslI	CCNNNNNNNGG	2 cut(s)	65, 172
BsmFI	GGGAC	2 cut(s)	205, 878
BsmI	GAATGC	2 cut(s)	77, 698
BsnI	GGCC	2 cut(s)	151, 328
BsoBI	CYCGRG	2 cut(s)	86, 896
Bsp1286I	GDGCHC	3 cut(s)	51, 93, 910
Bsp143I	GATC	4 cut(s)	584, 875, 920, 934
BspACI	CCGC	3 cut(s)	19, 464, 865
BspANI	GGCC	2 cut(s)	151, 328
BspCNI	CTCAG	2 cut(s)	131, 491
BspDI	ATCGAT	1 cut(s)	320
BspLI	GGNNCC	3 cut(s)	57, 783, 936
BspPI	GGATC	4 cut(s)	592, 883, 929, 942
BsrDI	GCAATG	2 cut(s)	809, 833
BsrI	ACTGG	6 cut(s)	59, 199, 400, 428, 599, 848
BssECI	CCNNGG	1 cut(s)	897
BssMI	GATC	4 cut(s)	584, 875, 920, 934
Bst2UI	CCWGG	2 cut(s)	248, 675
BstC8I	GCNNGC	4 cut(s)	224, 468, 529, 973
BstDEI	CTNAG	3 cut(s)	118, 478, 803
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	4 cut(s)	587, 878, 923, 937
BstMBI	GATC	4 cut(s)	584, 875, 920, 934
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 968, 977
BstNI	CCWGG	2 cut(s)	248, 675
BstNSI	RCATGY	3 cut(s)	230, 312, 975
BstSCI	CCNGG	2 cut(s)	246, 673
BstSFI	CTRYAG	1 cut(s)	666
BstSLI	GKGCMC	2 cut(s)	51, 910
BstV1I	GCAGC	3 cut(s)	149, 551, 647
BstX2I	RGATCY	2 cut(s)	584, 934
BstYI	RGATCY	2 cut(s)	584, 934
Bsu15I	ATCGAT	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	151, 328
BsuTUI	ATCGAT	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	2 cut(s)	606, 855
Cac8I	GCNNGC	4 cut(s)	224, 468, 529, 973
CaiI	CAGNNNCTG	1 cut(s)	854
Cfr13I	GGNCC	3 cut(s)	626, 671, 782
ClaI	ATCGAT	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	111, 769
CviAII	CATG	5 cut(s)	227, 309, 967, 972, 976
CviQI	GTAC	2 cut(s)	111, 769
DdeI	CTNAG	3 cut(s)	118, 478, 803
DpnI	GATC	4 cut(s)	586, 877, 922, 936
DpnII	GATC	4 cut(s)	584, 875, 920, 934
EciI	GGCGGA	1 cut(s)	453
Eco47I	GGWCC	3 cut(s)	626, 671, 782
Eco88I	CYCGRG	2 cut(s)	86, 896
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoO109I	RGGNCCY	2 cut(s)	626, 671
EcoRII	CCWGG	2 cut(s)	246, 673
EcoT22I	ATGCAT	3 cut(s)	77, 499, 977
FaeI	CATG	5 cut(s)	230, 312, 970, 975, 979
FaqI	GGGAC	2 cut(s)	205, 878
FatI	CATG	5 cut(s)	226, 308, 966, 971, 975
Fnu4HI	GCNGC	4 cut(s)	19, 163, 540, 636
FokI	GGATG	1 cut(s)	411
Fsp4HI	GCNGC	4 cut(s)	19, 163, 540, 636
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	4 cut(s)	19, 163, 540, 636
GsaI	CCCAGC	1 cut(s)	865
HaeIII	GGCC	2 cut(s)	151, 328
Hin1II	CATG	5 cut(s)	230, 312, 970, 975, 979
HincII	GTYRAC	1 cut(s)	828
HindII	GTYRAC	1 cut(s)	828
HinfI	GANTC	4 cut(s)	208, 347, 449, 757
HphI	GGTGA	1 cut(s)	1037
Hpy166II	GTNNAC	2 cut(s)	49, 828
Hpy188I	TCNGA	4 cut(s)	121, 481, 724, 791
Hpy188III	TCNNGA	4 cut(s)	86, 262, 774, 927
Hpy8I	GTNNAC	2 cut(s)	49, 828
HpyAV	CCTTC	5 cut(s)	282, 370, 617, 771, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 968, 977
HpyF3I	CTNAG	3 cut(s)	118, 478, 803
Hsp92II	CATG	5 cut(s)	230, 312, 970, 975, 979
Kzo9I	GATC	4 cut(s)	584, 875, 920, 934
Lsp1109I	GCAGC	3 cut(s)	149, 551, 647
LweI	GCATC	3 cut(s)	84, 362, 506
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	311, 601, 850
MalI	GATC	4 cut(s)	586, 877, 922, 936
MboI	GATC	4 cut(s)	584, 875, 920, 934
MboII	GAAGA	2 cut(s)	579, 761
MfeI	CAATTG	1 cut(s)	879
MflI	RGATCY	2 cut(s)	584, 934
MhlI	GDGCHC	3 cut(s)	51, 93, 910
MluCI	AATT	4 cut(s)	519, 561, 643, 879
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	814
MnlI	CCTC	9 cut(s)	162, 176, 181, 339, 371, 471, 487, 503, 892
Mph1103I	ATGCAT	3 cut(s)	77, 499, 977
MseI	TTAA	2 cut(s)	492, 522
MslI	CAYNNNNRTG	1 cut(s)	322
MspA1I	CMGCKG	2 cut(s)	290, 865
MspR9I	CCNGG	2 cut(s)	248, 675
MunI	CAATTG	1 cut(s)	879
Mva1269I	GAATGC	2 cut(s)	77, 698
MvaI	CCWGG	2 cut(s)	248, 675
MwoI	GCNNNNNNNGC	3 cut(s)	18, 968, 977
NdeII	GATC	4 cut(s)	584, 875, 920, 934
NlaIII	CATG	5 cut(s)	230, 312, 970, 975, 979
NlaIV	GGNNCC	3 cut(s)	57, 783, 936
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	601, 850
NsiI	ATGCAT	3 cut(s)	77, 499, 977
NspI	RCATGY	3 cut(s)	230, 312, 975
PaeI	GCATGC	1 cut(s)	975
PciI	ACATGT	1 cut(s)	308
PctI	GAATGC	2 cut(s)	77, 698
PfeI	GAWTC	3 cut(s)	347, 449, 757
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	4 cut(s)	20, 164, 541, 637
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PpuMI	RGGWCCY	2 cut(s)	626, 671
PscI	ACATGT	1 cut(s)	308
PshBI	ATTAAT	2 cut(s)	492, 522
Psp5II	RGGWCCY	2 cut(s)	626, 671
Psp6I	CCWGG	2 cut(s)	246, 673
PspFI	CCCAGC	1 cut(s)	861
PspGI	CCWGG	2 cut(s)	246, 673
PspN4I	GGNNCC	3 cut(s)	57, 783, 936
PspPI	GGNCC	3 cut(s)	626, 671, 782
PspPPI	RGGWCCY	2 cut(s)	626, 671
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	2 cut(s)	584, 934
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	2 cut(s)	112, 770
RsaNI	GTAC	2 cut(s)	111, 769
RseI	CAYNNNNRTG	1 cut(s)	322
SaqAI	TTAA	2 cut(s)	492, 522
SatI	GCNGC	4 cut(s)	19, 163, 540, 636
Sau3AI	GATC	4 cut(s)	584, 875, 920, 934
Sau96I	GGNCC	3 cut(s)	626, 671, 782
ScaI	AGTACT	1 cut(s)	770
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	2 cut(s)	248, 675
SduI	GDGCHC	3 cut(s)	51, 93, 910
SfaNI	GCATC	3 cut(s)	84, 362, 506
SfcI	CTRYAG	1 cut(s)	666
SinI	GGWCC	3 cut(s)	626, 671, 782
SmiMI	CAYNNNNRTG	1 cut(s)	322
SphI	GCATGC	1 cut(s)	975
Sse9I	AATT	4 cut(s)	519, 561, 643, 879
SsiI	CCGC	3 cut(s)	19, 464, 865
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	246, 673
TaqI	TCGA	2 cut(s)	320, 443
TasI	AATT	4 cut(s)	519, 561, 643, 879
TatI	WGTACW	1 cut(s)	768
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	3 cut(s)	347, 449, 757
Tru1I	TTAA	2 cut(s)	492, 522
Tru9I	TTAA	2 cut(s)	492, 522
TscAI	CASTG	2 cut(s)	606, 855
TseFI	GTSAC	2 cut(s)	601, 850
TseI	GCWGC	3 cut(s)	162, 539, 635
Tsp45I	GTSAC	2 cut(s)	601, 850
TspDTI	ATGAA	3 cut(s)	423, 564, 762
TspGWI	ACGGA	2 cut(s)	620, 807
TspRI	CASTG	2 cut(s)	606, 855
Van91I	CCANNNNNTGG	1 cut(s)	65
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	3 cut(s)	626, 671, 782
VspI	ATTAAT	2 cut(s)	492, 522
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	643
XceI	RCATGY	3 cut(s)	230, 312, 975
XcmI	CCANNNNNNNNNTGG	1 cut(s)	869
XspI	CTAG	1 cut(s)	215
ZrmI	AGTACT	1 cut(s)	770
Zsp2I	ATGCAT	3 cut(s)	77, 499, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.