Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Forward (+)

3842402 .. 3844947

Gene Structure 2546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTGAAAAGGAGGGCTTTGAAGTGGACCAGCTTGGGGTCACAGAAGGGACGAGCTTCTCTCAGCTACTCTACGAAGTCGAGCATGATGTGGTGGGTCTCCGAGTGAACGATCATCAACCCCAAATCTTCAACTACACCAACACCAACAGCTGTTCTTCTCTTTATTCCGCCACCGACCTTAAATCCCCCAAAATGCTCTGTTTCGGGGACTTTCAGAACAAGGACAGTAACATCCTCCAAATTGGGTTCCCGGAGATTTCGATTTCCCGGCCGCCTCAGAAAACAGGACTCACTTGCAGCGACTCCTCCTCTGTTTCTTCCACCAGCACCAAGGCCGCCTCGTCTTCCTCCAAGTCTAACCATAAGAAGCGAAACGGGGTGGCGCAAGAAAAGGTCCAATGTGCAAAGGAGAACACTGAGGCCGATCAGAGAAGCTCTAAGAAGCCGAAAACGGACAAGCCCGCTGCCGGAAAGAAAAGAGAGAAGCTCGGAGAAAGAATCTTAGCTCTGCAACAACTCGTGTCACCCTTCGGAAAGACGGACACAGCCTCAGTGCTTCATGAAGCGTTGGGATACATAAGGTTCCTGCACGACCAGGTTCAGGTTCTGTGCTCGCCATACCTGCAACGCTTGCCTTCATTACCTGAGGGAGGAGATGGGGCAGGGAAGGGTGGTGACCTGAGAAGCCGGGGACTGTGTTTGGTGCCTATGGATTACACCGCACATGTTGCGAACAACAACGGTGCTGATTACTGGTCGTCGGCGACAATGGCGAGTAACAACCACAATGTGTCATCCTCGCCGACGGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

29.47

Weight (kDa)

7.62

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	633
AccB1I	GGYRCC	1 cut(s)	706
AciI	CCGC	5 cut(s)	171, 275, 339, 465, 723
AcoI	YGGCCR	1 cut(s)	272
AdeI	CACNNNGTG	1 cut(s)	793
AfiI	CCNNNNNNNGG	4 cut(s)	37, 470, 604, 653
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	2 cut(s)	23, 133
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	7 cut(s)	34, 57, 67, 153, 438, 490, 509
AluI	AGCT	7 cut(s)	34, 57, 67, 153, 438, 490, 509
Alw21I	GWGCWC	1 cut(s)	617
Alw26I	GTCTC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	610
AoxI	GGCC	3 cut(s)	272, 336, 423
ApeKI	GCWGC	2 cut(s)	300, 467
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	28, 397
AsuC2I	CCSGG	3 cut(s)	254, 271, 692
AsuHPI	GGTGA	2 cut(s)	519, 689
AvaII	GGWCC	2 cut(s)	28, 397
AxyI	CCTNAGG	1 cut(s)	648
BanI	GGYRCC	1 cut(s)	706
BauI	CACGAG	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	617
BbvI	GCAGC	2 cut(s)	312, 454
BccI	CCATC	1 cut(s)	653
BciT130I	CCWGG	1 cut(s)	599
BciVI	GTATCC	1 cut(s)	569
BcnI	CCSGG	3 cut(s)	254, 271, 692
BcoDI	GTCTC	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	633
BfuI	GTATCC	1 cut(s)	569
BisI	GCNGC	4 cut(s)	275, 301, 339, 468
BlsI	GCNGC	4 cut(s)	276, 302, 340, 469
Bme1390I	CCNGG	4 cut(s)	254, 271, 599, 692
Bme18I	GGWCC	2 cut(s)	28, 397
BmgT120I	GGNCC	2 cut(s)	28, 397
BmiI	GGNNCC	3 cut(s)	251, 587, 708
BmrFI	CCNGG	4 cut(s)	254, 271, 599, 692
BpiI	GAAGAC	1 cut(s)	339
BplI	GAGNNNNNCTC	4 cut(s)	46, 78, 474, 506
BpuMI	CCSGG	3 cut(s)	254, 271, 692
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	333, 691
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 470, 604, 653
Bse1I	ACTGG	1 cut(s)	761
Bse21I	CCTNAGG	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	2 cut(s)	333, 691
BseGI	GGATG	2 cut(s)	234, 797
BseLI	CCNNNNNNNGG	4 cut(s)	37, 470, 604, 653
BseMII	CTCAG	6 cut(s)	77, 293, 411, 567, 639, 674
BseNI	ACTGG	1 cut(s)	761
BseRI	GAGGAG	3 cut(s)	298, 301, 669
BseX3I	CGGCCG	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	312, 454
BsgI	GTGCAG	1 cut(s)	575
Bsh1285I	CGRYCG	1 cut(s)	275
BshFI	GGCC	3 cut(s)	274, 338, 425
BshNI	GGYRCC	1 cut(s)	706
BsiEI	CGRYCG	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	617
BsiSI	CCGG	4 cut(s)	254, 271, 471, 691
BslFI	GGGAC	3 cut(s)	64, 224, 708
BslI	CCNNNNNNNGG	4 cut(s)	37, 470, 604, 653
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	3 cut(s)	64, 224, 708
BsnI	GGCC	3 cut(s)	274, 338, 425
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	617
Bsp143I	GATC	2 cut(s)	112, 427
BspACI	CCGC	5 cut(s)	171, 275, 339, 465, 723
BspANI	GGCC	3 cut(s)	274, 338, 425
BspCNI	CTCAG	6 cut(s)	76, 292, 412, 566, 640, 675
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	3 cut(s)	251, 587, 708
BspMI	ACCTGC	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	706
BspTNI	GGTCTC	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	761
BssECI	CCNNGG	2 cut(s)	333, 691
BssMI	GATC	2 cut(s)	112, 427
BssSI	CACGAG	1 cut(s)	521
BssT1I	CCWWGG	1 cut(s)	333
Bst2BI	CACGAG	1 cut(s)	521
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	3 cut(s)	230, 699, 746
BstAPI	GCANNNNNTGC	2 cut(s)	634, 731
BstC8I	GCNNGC	3 cut(s)	465, 617, 635
BstDEI	CTNAG	8 cut(s)	63, 279, 420, 441, 505, 553, 648, 683
BstEII	GGTNACC	1 cut(s)	677
BstENI	CCTNNNNNAGG	1 cut(s)	651
BstF5I	GGATG	2 cut(s)	234, 797
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	2 cut(s)	115, 430
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	112, 427
BstMCI	CGRYCG	1 cut(s)	275
BstMWI	GCNNNNNNNGC	4 cut(s)	625, 634, 731, 773
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	731
BstPI	GGTNACC	1 cut(s)	677
BstSCI	CCNGG	4 cut(s)	252, 269, 597, 690
BstV1I	GCAGC	2 cut(s)	312, 454
BstV2I	GAAGAC	1 cut(s)	339
BstZI	CGGCCG	1 cut(s)	272
Bsu36I	CCTNAGG	1 cut(s)	648
BsuI	GTATCC	1 cut(s)	569
BsuRI	GGCC	3 cut(s)	274, 338, 425
BtsCI	GGATG	2 cut(s)	234, 797
BtsIMutI	CAGTG	2 cut(s)	417, 561
BveI	ACCTGC	1 cut(s)	633
Cac8I	GCNNGC	3 cut(s)	465, 617, 635
CaiI	CAGNNNCTG	1 cut(s)	610
CciI	TCATGA	1 cut(s)	562
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	28, 397
CsiI	ACCWGGT	1 cut(s)	597
CviAII	CATG	3 cut(s)	86, 563, 728
DdeI	CTNAG	8 cut(s)	63, 279, 420, 441, 505, 553, 648, 683
DpnI	GATC	2 cut(s)	114, 429
DpnII	GATC	2 cut(s)	112, 427
DraIII	CACNNNGTG	1 cut(s)	793
EaeI	YGGCCR	1 cut(s)	272
EagI	CGGCCG	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	2 cut(s)	28, 397
Eco52I	CGGCCG	1 cut(s)	272
Eco81I	CCTNAGG	1 cut(s)	648
Eco91I	GGTNACC	1 cut(s)	677
EcoNI	CCTNNNNNAGG	1 cut(s)	651
EcoO65I	GGTNACC	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	3 cut(s)	89, 566, 731
FaiI	YATR	7 cut(s)	87, 366, 564, 581, 622, 713, 729
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	3 cut(s)	64, 224, 708
FatI	CATG	3 cut(s)	85, 562, 727
FauI	CCCGC	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	275, 301, 339, 468
FokI	GGATG	2 cut(s)	221, 784
Fsp4HI	GCNGC	4 cut(s)	275, 301, 339, 468
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	4 cut(s)	275, 301, 339, 468
HaeIII	GGCC	3 cut(s)	274, 338, 425
HapII	CCGG	4 cut(s)	254, 271, 471, 691
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	3 cut(s)	89, 566, 731
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HinfI	GANTC	3 cut(s)	291, 305, 501
HpaII	CCGG	4 cut(s)	254, 271, 471, 691
HphI	GGTGA	2 cut(s)	519, 689
Hpy166II	GTNNAC	2 cut(s)	28, 109
Hpy188I	TCNGA	6 cut(s)	104, 219, 282, 432, 494, 536
Hpy188III	TCNNGA	1 cut(s)	563
Hpy8I	GTNNAC	2 cut(s)	28, 109
Hpy99I	CGWCG	2 cut(s)	766, 811
HpyAV	CCTTC	4 cut(s)	41, 541, 648, 664
HpyCH4III	ACNGT	3 cut(s)	230, 699, 746
HpyCH4V	TGCA	5 cut(s)	300, 407, 514, 592, 628
HpyF10VI	GCNNNNNNNGC	4 cut(s)	625, 634, 731, 773
HpyF3I	CTNAG	8 cut(s)	63, 279, 420, 441, 505, 553, 648, 683
Hsp92II	CATG	3 cut(s)	89, 566, 731
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	112, 427
Lsp1109I	GCAGC	2 cut(s)	312, 454
MabI	ACCWGGT	1 cut(s)	597
MaeIII	GTNAC	5 cut(s)	40, 230, 525, 677, 779
MalI	GATC	2 cut(s)	114, 429
MboI	GATC	2 cut(s)	112, 427
MboII	GAAGA	4 cut(s)	121, 150, 312, 339
MhlI	GDGCHC	1 cut(s)	617
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	285, 299
MseI	TTAA	1 cut(s)	183
MspA1I	CMGCKG	2 cut(s)	153, 467
MspI	CCGG	4 cut(s)	254, 271, 471, 691
MspR9I	CCNGG	4 cut(s)	254, 271, 599, 692
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	4 cut(s)	625, 634, 731, 773
NciI	CCSGG	3 cut(s)	254, 271, 692
NdeII	GATC	2 cut(s)	112, 427
NlaIII	CATG	3 cut(s)	89, 566, 731
NlaIV	GGNNCC	3 cut(s)	251, 587, 708
NmuCI	GTSAC	3 cut(s)	40, 525, 677
NspI	RCATGY	1 cut(s)	731
PagI	TCATGA	1 cut(s)	562
PciI	ACATGT	1 cut(s)	727
PfeI	GAWTC	1 cut(s)	501
PfoI	TCCNGGA	1 cut(s)	252
PkrI	GCNGC	4 cut(s)	276, 302, 340, 469
PleI	GAGTC	2 cut(s)	285, 299
PpsI	GAGTC	2 cut(s)	285, 299
PscI	ACATGT	1 cut(s)	727
Psp6I	CCWGG	1 cut(s)	597
PspEI	GGTNACC	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	3 cut(s)	251, 587, 708
PspPI	GGNCC	2 cut(s)	28, 397
PstNI	CAGNNNCTG	1 cut(s)	610
PvuII	CAGCTG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	4 cut(s)	275, 301, 339, 468
Sau3AI	GATC	2 cut(s)	112, 427
Sau96I	GGNCC	2 cut(s)	28, 397
SchI	GAGTC	2 cut(s)	285, 299
ScrFI	CCNGG	4 cut(s)	254, 271, 599, 692
SduI	GDGCHC	1 cut(s)	617
SexAI	ACCWGGT	1 cut(s)	597
SinI	GGWCC	2 cut(s)	28, 397
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	5 cut(s)	171, 275, 339, 465, 723
StyD4I	CCNGG	4 cut(s)	252, 269, 597, 690
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	230, 699, 746
TaqI	TCGA	2 cut(s)	81, 263
TasI	AATT	1 cut(s)	243
TauI	GCSGC	2 cut(s)	277, 341
TfiI	GAWTC	1 cut(s)	501
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	424, 561
TseFI	GTSAC	3 cut(s)	40, 525, 677
TseI	GCWGC	2 cut(s)	300, 467
Tsp45I	GTSAC	3 cut(s)	40, 525, 677
TspDTI	ATGAA	3 cut(s)	551, 579, 630
TspGWI	ACGGA	2 cut(s)	470, 557
TspRI	CASTG	2 cut(s)	424, 561
VpaK11BI	GGWCC	2 cut(s)	28, 397
XagI	CCTNNNNNAGG	1 cut(s)	651
XceI	RCATGY	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.