Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Forward (+)

9923442 .. 9924964

Gene Structure 1523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G006260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCTGAAAAGGAGGGTTTTGAGGTGGACCAGCTTGGGGTCATAGAAGGGACGAGCTTCTCTCAGCTGCTCTACGAAGTCGAACATGATGTAGTGGGTCTTTGTGTAGATGATCATCAATCCCAAATCTTCAACTACAACACCAACAGCTGTTCCTCGCTTTATTCCGCCACCGACCTTAAAACCCCCAAAATGGGAAATTGGGTTCCGGAGATTTCGATTTCCCGGCCGCCGGCTCAGAAATCAGGGCTCACATGCAGCGATTCCTCCTCTGTTTCTTCCACCAGCACCAAAGCCGCCACTTCTTCCTCCATGTCTAATAGTAATAAGAAGCGAAACGGGGTGGCGCAAGAACAACAAGTTCAATGTGCAAGCACCACAACTCAGGCCGGTCAGAGAATCTCTAAGAAGCCGAAAACGGACAAGCCCGCTGCCGGAAAGGAGAGAGAACTGGGAGAAAGAATCTCAGCACTGCAGCAACTCGTTTCACCCTTTGGAAAGACAGACACAGCCTCGGTGCTTCATGAAGCGATGGGATACATCAGGTTCCTGCACGACCAGGTTCAGGTTCTGTGTTCGCCATACCTGAAACGCTTGCCTTCATTACCTGGAGGAGGAGATGGGGCGGAGAAGAAGGACGAAGAAGCGAGGAGTAATGACCTGAGAAGCCGGGGGCTGTGTTTGGTGCCGATGGAGCACACCGCACATTTGGCGAACAACAACGGTGCCGATTTCTGGTCACCGGCTACAATGGCGAGCAACAGCAACAACAACAATGTGTCATCGTCCACCGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

28.66

Weight (kDa)

6.09

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	685, 725
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	6 cut(s)	168, 230, 297, 429, 626, 702
AcoI	YGGCCR	1 cut(s)	227
AfiI	CCNNNNNNNGG	8 cut(s)	37, 193, 194, 232, 434, 565, 614, 735
AgsI	TTSAA	2 cut(s)	133, 365
AjnI	CCWGG	2 cut(s)	558, 607
AloI	GAACNNNNNNTCC	2 cut(s)	189, 221
AluBI	AGCT	4 cut(s)	34, 57, 67, 150
AluI	AGCT	4 cut(s)	34, 57, 67, 150
Alw21I	GWGCWC	1 cut(s)	699
AlwNI	CAGNNNCTG	1 cut(s)	571
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	2 cut(s)	227, 387
ApeKI	GCWGC	4 cut(s)	67, 258, 431, 475
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	2 cut(s)	226, 671
AsuHPI	GGTGA	2 cut(s)	480, 732
AvaII	GGWCC	1 cut(s)	28
BanI	GGYRCC	2 cut(s)	685, 725
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	4 cut(s)	54, 270, 418, 487
BccI	CCATC	3 cut(s)	526, 614, 685
BciT130I	CCWGG	2 cut(s)	560, 609
BciVI	GTATCC	1 cut(s)	530
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	226, 671
BfmI	CTRYAG	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	530
BisI	GCNGC	6 cut(s)	68, 230, 259, 297, 432, 476
BlsI	GCNGC	6 cut(s)	69, 231, 260, 298, 433, 477
Bme1390I	CCNGG	4 cut(s)	226, 560, 609, 671
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	4 cut(s)	207, 548, 687, 727
BmrFI	CCNGG	4 cut(s)	226, 560, 609, 671
BmrI	ACTGGG	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	461
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpmI	CTGGAG	1 cut(s)	630
BpuMI	CCSGG	2 cut(s)	226, 671
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	513, 670
BsaWI	WCCGGW	2 cut(s)	208, 791
Bsc4I	CCNNNNNNNGG	8 cut(s)	37, 193, 194, 232, 434, 565, 614, 735
Bse118I	RCCGGY	3 cut(s)	232, 389, 742
Bse1I	ACTGG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	560, 609
BseDI	CCNNGG	2 cut(s)	513, 670
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	8 cut(s)	37, 193, 194, 232, 434, 565, 614, 735
BseMII	CTCAG	5 cut(s)	77, 251, 398, 480, 653
BseNI	ACTGG	1 cut(s)	456
BseRI	GAGGAG	4 cut(s)	259, 627, 630, 664
BseX3I	CGGCCG	1 cut(s)	227
BseXI	GCAGC	4 cut(s)	54, 270, 418, 487
BsgI	GTGCAG	1 cut(s)	536
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	229, 389
BshNI	GGYRCC	2 cut(s)	685, 725
BsiEI	CGRYCG	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	699
BsiSI	CCGG	8 cut(s)	209, 226, 233, 390, 435, 670, 743, 792
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	8 cut(s)	37, 193, 194, 232, 434, 565, 614, 735
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	229, 389
Bsp1286I	GDGCHC	2 cut(s)	252, 699
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	6 cut(s)	168, 230, 297, 429, 626, 702
BspANI	GGCC	2 cut(s)	229, 389
BspCNI	CTCAG	5 cut(s)	76, 250, 397, 479, 654
BspEI	TCCGGA	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	4 cut(s)	207, 548, 687, 727
BspMAI	CTGCAG	1 cut(s)	477
BspT107I	GGYRCC	2 cut(s)	685, 725
BsrFI	RCCGGY	3 cut(s)	232, 389, 742
BsrI	ACTGG	1 cut(s)	456
BssAI	RCCGGY	3 cut(s)	232, 389, 742
BssECI	CCNNGG	2 cut(s)	513, 670
BssMI	GATC	1 cut(s)	112
Bst2UI	CCWGG	2 cut(s)	560, 609
Bst4CI	ACNGT	1 cut(s)	725
BstC8I	GCNNGC	5 cut(s)	234, 373, 429, 596, 757
BstDEI	CTNAG	6 cut(s)	63, 237, 384, 405, 466, 662
BstEII	GGTNACC	1 cut(s)	738
BstENI	CCTNNNNNAGG	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	3 cut(s)	694, 710, 752
BstNI	CCWGG	2 cut(s)	560, 609
BstNSI	RCATGY	1 cut(s)	258
BstPI	GGTNACC	1 cut(s)	738
BstSCI	CCNGG	4 cut(s)	224, 558, 607, 669
BstSFI	CTRYAG	1 cut(s)	473
BstV1I	GCAGC	4 cut(s)	54, 270, 418, 487
BstZI	CGGCCG	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	229, 389
BtgZI	GCGATG	1 cut(s)	545
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	5 cut(s)	234, 373, 429, 596, 757
CaiI	CAGNNNCTG	1 cut(s)	571
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	1 cut(s)	349
Cfr10I	RCCGGY	3 cut(s)	232, 389, 742
Cfr13I	GGNCC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	558
CviAII	CATG	4 cut(s)	86, 255, 313, 524
DdeI	CTNAG	6 cut(s)	63, 237, 384, 405, 466, 662
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	227
EagI	CGGCCG	1 cut(s)	227
EciI	GGCGGA	2 cut(s)	157, 641
EclXI	CGGCCG	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	28
Eco52I	CGGCCG	1 cut(s)	227
Eco91I	GGTNACC	1 cut(s)	738
EcoNI	CCTNNNNNAGG	1 cut(s)	612
EcoO65I	GGTNACC	1 cut(s)	738
EcoRII	CCWGG	2 cut(s)	558, 607
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	4 cut(s)	89, 258, 316, 527
FaiI	YATR	6 cut(s)	44, 87, 256, 314, 525, 583
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	4 cut(s)	85, 254, 312, 523
FauI	CCCGC	1 cut(s)	436
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	6 cut(s)	68, 230, 259, 297, 432, 476
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	6 cut(s)	68, 230, 259, 297, 432, 476
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	6 cut(s)	68, 230, 259, 297, 432, 476
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	2 cut(s)	229, 389
HapII	CCGG	8 cut(s)	209, 226, 233, 390, 435, 670, 743, 792
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	4 cut(s)	89, 258, 316, 527
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	3 cut(s)	263, 399, 462
HpaII	CCGG	8 cut(s)	209, 226, 233, 390, 435, 670, 743, 792
HphI	GGTGA	2 cut(s)	480, 732
Hpy166II	GTNNAC	2 cut(s)	28, 789
Hpy188I	TCNGA	2 cut(s)	240, 396
Hpy188III	TCNNGA	2 cut(s)	209, 524
Hpy8I	GTNNAC	2 cut(s)	28, 789
HpyAV	CCTTC	3 cut(s)	41, 609, 628
HpyCH4III	ACNGT	1 cut(s)	725
HpyCH4V	TGCA	4 cut(s)	258, 371, 475, 553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	694, 710, 752
HpyF3I	CTNAG	6 cut(s)	63, 237, 384, 405, 466, 662
Hsp92II	CATG	4 cut(s)	89, 258, 316, 527
HspAI	GCGC	1 cut(s)	347
Kpn2I	TCCGGA	1 cut(s)	208
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	4 cut(s)	54, 270, 418, 487
MabI	ACCWGGT	1 cut(s)	558
MaeIII	GTNAC	1 cut(s)	738
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	5 cut(s)	121, 270, 297, 643, 653
MhlI	GDGCHC	2 cut(s)	252, 699
MluCI	AATT	1 cut(s)	199
MroI	TCCGGA	1 cut(s)	208
MroNI	GCCGGC	1 cut(s)	232
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	3 cut(s)	67, 150, 431
MspI	CCGG	8 cut(s)	209, 226, 233, 390, 435, 670, 743, 792
MspR9I	CCNGG	4 cut(s)	226, 560, 609, 671
MvaI	CCWGG	2 cut(s)	560, 609
MwoI	GCNNNNNNNGC	3 cut(s)	694, 710, 752
NaeI	GCCGGC	1 cut(s)	234
NciI	CCSGG	2 cut(s)	226, 671
NdeII	GATC	1 cut(s)	112
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	4 cut(s)	89, 258, 316, 527
NlaIV	GGNNCC	4 cut(s)	207, 548, 687, 727
NmuCI	GTSAC	1 cut(s)	738
NspI	RCATGY	1 cut(s)	258
PagI	TCATGA	1 cut(s)	523
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	263, 399, 462
PkrI	GCNGC	6 cut(s)	69, 231, 260, 298, 433, 477
Psp6I	CCWGG	2 cut(s)	558, 607
PspEI	GGTNACC	1 cut(s)	738
PspGI	CCWGG	2 cut(s)	558, 607
PspN4I	GGNNCC	4 cut(s)	207, 548, 687, 727
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	477
PstNI	CAGNNNCTG	1 cut(s)	571
PvuII	CAGCTG	2 cut(s)	67, 150
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	6 cut(s)	68, 230, 259, 297, 432, 476
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	4 cut(s)	226, 560, 609, 671
SduI	GDGCHC	2 cut(s)	252, 699
SexAI	ACCWGGT	1 cut(s)	558
SfcI	CTRYAG	1 cut(s)	473
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	6 cut(s)	168, 230, 297, 429, 626, 702
StyD4I	CCNGG	4 cut(s)	224, 558, 607, 669
TaaI	ACNGT	1 cut(s)	725
TaqI	TCGA	2 cut(s)	81, 218
TasI	AATT	1 cut(s)	199
TauI	GCSGC	2 cut(s)	232, 299
TfiI	GAWTC	3 cut(s)	263, 399, 462
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	738
TseI	GCWGC	4 cut(s)	67, 258, 431, 475
Tsp45I	GTSAC	1 cut(s)	738
TspDTI	ATGAA	3 cut(s)	512, 540, 591
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	28
XagI	CCTNNNNNAGG	1 cut(s)	612
XceI	RCATGY	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.