Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Reverse (-)

59209758 .. 59211272

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014894

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCTGAAAAGGAGGGTTTTGAGGTGGACCAGCTTGGGGTTATAGAAGGGACGAGCTTCTCCCAGCTACTCTACGAAGTCGAACATGATGTGGTGGGTCTTTCTGTAGATGATCATCAATCCCAAATCTTCAACTACACCACCAACAGCTGTTCCTCGCTTTATTCTGCCACCGACCTTAAAACCCCCAAAATGCTCTGTTTCGGGGACTTTCAGAACAAGGACAGGGACAACCACCACCTAGGGGAAATTGGGTTTCCGGAGATTTCGATTTCCCGGCTGCCGGCTCAGAAATCAGGGCTCACATGCAGCGATTCCTCCTCTGTTTCTCCCACCAGCACCAAAGCGGCCTTGTCTTCCTCCAAGTCTAGTTGTAATAAGAAGCGAAACGGGGTGGCGCAAGAGCAGGTTGAATGTGCAAGCACCACAACTCAGGTCGGTCAGAGAAGCTCTAAGAAGCCGAAAACGGACAAGCCCGCTGCCGGAAAGAGGAGAGAGAAGCTGGGAGAAAGAATCTCAGCACTGCAGCAACTCGTTTCACCCTTTGGAAAGACAGACACAGCCTCGGTGCTTCATGAAGCGATGGGATACATCAGGTTCCTGCACGACCAGGTTCAGGTTCTGTGCTCGCCATACCTGCAACGCTTGCCTTCGTTACCTCAGGGAGGAGGAGATGGGCCGGAGAAGAAAGACGAAGAAGCGAGGAGTAATGACCTGAGAAGCCGGGGGCTGTGTTTGGTGCCGATGGAGTACACCGCACATTTGGCGAACAACAACGGTGCCGATTTCTGGTCACCGGCTACAATGGCGAACCACAACAACAACAATGTGTCATCGTCGACCGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

30.81

Weight (kDa)

6.25

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	397, 645
AccB1I	GGYRCC	2 cut(s)	739, 779
AccI	GTMKAC	1 cut(s)	839
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	3 cut(s)	347, 477, 756
AfaI	GTAC	1 cut(s)	752
AfiI	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 482, 489, 616, 665, 789
AgsI	TTSAA	2 cut(s)	133, 413
AjnI	CCWGG	1 cut(s)	609
AluBI	AGCT	6 cut(s)	34, 57, 67, 150, 450, 502
AluI	AGCT	6 cut(s)	34, 57, 67, 150, 450, 502
Alw21I	GWGCWC	1 cut(s)	629
AlwNI	CAGNNNCTG	1 cut(s)	622
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	2 cut(s)	348, 677
ApeKI	GCWGC	4 cut(s)	280, 309, 479, 526
AspA2I	CCTAGG	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	2 cut(s)	28, 677
AsuC2I	CCSGG	2 cut(s)	277, 725
AsuHPI	GGTGA	2 cut(s)	531, 786
AvaII	GGWCC	1 cut(s)	28
AvrII	CCTAGG	1 cut(s)	241
AxyI	CCTNAGG	1 cut(s)	660
BanI	GGYRCC	2 cut(s)	739, 779
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	629
BbvI	GCAGC	4 cut(s)	267, 321, 466, 538
BccI	CCATC	3 cut(s)	577, 668, 739
BciT130I	CCWGG	1 cut(s)	611
BciVI	GTATCC	1 cut(s)	581
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	277, 725
BfaI	CTAG	2 cut(s)	242, 369
BfmI	CTRYAG	2 cut(s)	105, 524
BfuAI	ACCTGC	2 cut(s)	397, 645
BfuI	GTATCC	1 cut(s)	581
BisI	GCNGC	5 cut(s)	281, 310, 348, 480, 527
BlnI	CCTAGG	1 cut(s)	241
BlsI	GCNGC	5 cut(s)	282, 311, 349, 481, 528
Bme1390I	CCNGG	3 cut(s)	277, 611, 725
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	28, 677
BmiI	GGNNCC	3 cut(s)	599, 741, 781
BmrFI	CCNGG	3 cut(s)	277, 611, 725
BpiI	GAAGAC	1 cut(s)	348
BpuMI	CCSGG	2 cut(s)	277, 725
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	241, 564, 724
BsaWI	WCCGGW	2 cut(s)	259, 842
Bsc4I	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 482, 489, 616, 665, 789
Bse118I	RCCGGY	2 cut(s)	283, 796
Bse21I	CCTNAGG	1 cut(s)	660
Bse8I	GATNNNNATC	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	3 cut(s)	241, 564, 724
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 482, 489, 616, 665, 789
BseMII	CTCAG	5 cut(s)	302, 446, 531, 674, 707
BseRI	GAGGAG	5 cut(s)	310, 505, 681, 684, 718
BseXI	GCAGC	4 cut(s)	267, 321, 466, 538
BseYI	CCCAGC	2 cut(s)	63, 502
BsgI	GTGCAG	1 cut(s)	587
Bsh1285I	CGRYCG	1 cut(s)	843
BshFI	GGCC	2 cut(s)	350, 679
BshNI	GGYRCC	2 cut(s)	739, 779
BsiEI	CGRYCG	1 cut(s)	843
BsiHKAI	GWGCWC	1 cut(s)	629
BsiSI	CCGG	8 cut(s)	260, 277, 284, 483, 680, 724, 797, 843
BslFI	GGGAC	3 cut(s)	64, 221, 242
BslI	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 482, 489, 616, 665, 789
BsmFI	GGGAC	3 cut(s)	64, 221, 242
BsnI	GGCC	2 cut(s)	350, 679
Bsp1286I	GDGCHC	2 cut(s)	303, 629
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	3 cut(s)	347, 477, 756
BspANI	GGCC	2 cut(s)	350, 679
BspCNI	CTCAG	5 cut(s)	301, 445, 530, 673, 708
BspEI	TCCGGA	1 cut(s)	259
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	599, 741, 781
BspMAI	CTGCAG	1 cut(s)	528
BspMI	ACCTGC	2 cut(s)	397, 645
BspT107I	GGYRCC	2 cut(s)	739, 779
BsrFI	RCCGGY	2 cut(s)	283, 796
BssAI	RCCGGY	2 cut(s)	283, 796
BssECI	CCNNGG	3 cut(s)	241, 564, 724
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	1 cut(s)	779
BstAPI	GCANNNNNTGC	1 cut(s)	646
BstC8I	GCNNGC	5 cut(s)	285, 421, 477, 629, 647
BstDEI	CTNAG	6 cut(s)	288, 432, 453, 517, 660, 716
BstEII	GGTNACC	1 cut(s)	792
BstENI	CCTNNNNNAGG	1 cut(s)	663
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMCI	CGRYCG	1 cut(s)	843
BstMWI	GCNNNNNNNGC	4 cut(s)	637, 646, 764, 806
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	792
BstSCI	CCNGG	3 cut(s)	275, 609, 723
BstSFI	CTRYAG	2 cut(s)	105, 524
BstV1I	GCAGC	4 cut(s)	267, 321, 466, 538
BstV2I	GAAGAC	1 cut(s)	348
Bsu36I	CCTNAGG	1 cut(s)	660
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	2 cut(s)	350, 679
BtgZI	GCGATG	1 cut(s)	596
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	1 cut(s)	521
BveI	ACCTGC	2 cut(s)	397, 645
Cac8I	GCNNGC	5 cut(s)	285, 421, 477, 629, 647
CaiI	CAGNNNCTG	1 cut(s)	622
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	1 cut(s)	400
Cfr10I	RCCGGY	2 cut(s)	283, 796
Cfr13I	GGNCC	2 cut(s)	28, 677
CsiI	ACCWGGT	1 cut(s)	609
Csp6I	GTAC	1 cut(s)	751
CviAII	CATG	3 cut(s)	86, 306, 575
CviQI	GTAC	1 cut(s)	751
DdeI	CTNAG	6 cut(s)	288, 432, 453, 517, 660, 716
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	28
Eco81I	CCTNAGG	1 cut(s)	660
Eco91I	GGTNACC	1 cut(s)	792
EcoNI	CCTNNNNNAGG	1 cut(s)	663
EcoO65I	GGTNACC	1 cut(s)	792
EcoRII	CCWGG	1 cut(s)	609
EcoT14I	CCWWGG	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	3 cut(s)	89, 309, 578
FaiI	YATR	5 cut(s)	44, 87, 307, 576, 634
FaqI	GGGAC	3 cut(s)	64, 221, 242
FatI	CATG	3 cut(s)	85, 305, 574
FauI	CCCGC	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	839
Fnu4HI	GCNGC	5 cut(s)	281, 310, 348, 480, 527
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	5 cut(s)	281, 310, 348, 480, 527
FspBI	CTAG	2 cut(s)	242, 369
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	5 cut(s)	281, 310, 348, 480, 527
GsaI	CCCAGC	2 cut(s)	67, 506
HaeIII	GGCC	2 cut(s)	350, 679
HapII	CCGG	8 cut(s)	260, 277, 284, 483, 680, 724, 797, 843
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	3 cut(s)	89, 309, 578
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	840
HindII	GTYRAC	1 cut(s)	840
HinfI	GANTC	2 cut(s)	314, 513
HpaII	CCGG	8 cut(s)	260, 277, 284, 483, 680, 724, 797, 843
HphI	GGTGA	2 cut(s)	531, 786
Hpy166II	GTNNAC	3 cut(s)	28, 753, 840
Hpy188I	TCNGA	3 cut(s)	216, 291, 444
Hpy188III	TCNNGA	2 cut(s)	260, 575
Hpy8I	GTNNAC	3 cut(s)	28, 753, 840
Hpy99I	CGWCG	1 cut(s)	841
HpyAV	CCTTC	2 cut(s)	41, 660
HpyCH4III	ACNGT	1 cut(s)	779
HpyCH4V	TGCA	5 cut(s)	309, 419, 526, 604, 640
HpyF10VI	GCNNNNNNNGC	4 cut(s)	637, 646, 764, 806
HpyF3I	CTNAG	6 cut(s)	288, 432, 453, 517, 660, 716
Hsp92II	CATG	3 cut(s)	89, 309, 578
HspAI	GCGC	1 cut(s)	398
Kpn2I	TCCGGA	1 cut(s)	259
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	112
Lsp1109I	GCAGC	4 cut(s)	267, 321, 466, 538
MabI	ACCWGGT	1 cut(s)	609
MaeI	CTAG	2 cut(s)	242, 369
MaeIII	GTNAC	2 cut(s)	654, 792
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	4 cut(s)	121, 348, 697, 707
MhlI	GDGCHC	2 cut(s)	303, 629
MluCI	AATT	1 cut(s)	249
MroI	TCCGGA	1 cut(s)	259
MroNI	GCCGGC	1 cut(s)	283
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	2 cut(s)	150, 479
MspI	CCGG	8 cut(s)	260, 277, 284, 483, 680, 724, 797, 843
MspR9I	CCNGG	3 cut(s)	277, 611, 725
MvaI	CCWGG	1 cut(s)	611
MwoI	GCNNNNNNNGC	4 cut(s)	637, 646, 764, 806
NaeI	GCCGGC	1 cut(s)	285
NciI	CCSGG	2 cut(s)	277, 725
NdeII	GATC	1 cut(s)	112
NgoMIV	GCCGGC	1 cut(s)	283
NlaIII	CATG	3 cut(s)	89, 309, 578
NlaIV	GGNNCC	3 cut(s)	599, 741, 781
NmuCI	GTSAC	1 cut(s)	792
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	1 cut(s)	574
PdiI	GCCGGC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	314, 513
PkrI	GCNGC	5 cut(s)	282, 311, 349, 481, 528
Psp6I	CCWGG	1 cut(s)	609
PspEI	GGTNACC	1 cut(s)	792
PspFI	CCCAGC	2 cut(s)	63, 502
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	3 cut(s)	599, 741, 781
PspPI	GGNCC	2 cut(s)	28, 677
PstI	CTGCAG	1 cut(s)	528
PstNI	CAGNNNCTG	1 cut(s)	622
PvuII	CAGCTG	1 cut(s)	150
RsaI	GTAC	1 cut(s)	752
RsaNI	GTAC	1 cut(s)	751
SalI	GTCGAC	1 cut(s)	838
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	5 cut(s)	281, 310, 348, 480, 527
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	2 cut(s)	28, 677
ScrFI	CCNGG	3 cut(s)	277, 611, 725
SduI	GDGCHC	2 cut(s)	303, 629
SexAI	ACCWGGT	1 cut(s)	609
SfcI	CTRYAG	2 cut(s)	105, 524
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	3 cut(s)	347, 477, 756
SspMI	CTAG	2 cut(s)	242, 369
StyD4I	CCNGG	3 cut(s)	275, 609, 723
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	779
TaqI	TCGA	3 cut(s)	81, 269, 839
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	1 cut(s)	249
TatI	WGTACW	1 cut(s)	750
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	314, 513
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	1 cut(s)	792
TseI	GCWGC	4 cut(s)	280, 309, 479, 526
Tsp45I	GTSAC	1 cut(s)	792
TspDTI	ATGAA	2 cut(s)	563, 591
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	1 cut(s)	528
VpaK11BI	GGWCC	1 cut(s)	28
XagI	CCTNNNNNAGG	1 cut(s)	663
XceI	RCATGY	1 cut(s)	309
XmaJI	CCTAGG	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	839
XspI	CTAG	2 cut(s)	242, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.