Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Reverse (-)

12112662 .. 12115310

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09070.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCGGAAAGTGGTGGGTTCGAGGGGGACCATTTGGCGGTGACAGAGGGGACTAGCTTCTCTCAGCTACTCTTCGCGGCCGACGAAGTCGTTAACCTTGCCGTGAACTCCGACCAGACCTTTAACTACACCCGCTCATCTACTTATCCCACCCAGATTAAGCCACCCAAAATGCTCTGCTTCGGAAACTACGACCACCAAACCGACGTTAACCGTGTCGAAATTGGGTTTTCGGAAACGGCCAAGAAATCAGCCATCACATGCAGCAGCTCCTCCTCCGTTTCTTCCACAAGCACCGCCAGCATCAGCGCATTGCCCAACTCCAAAAATAAAAGGCGAAATGGGTTGGCTCCGATCAGCTGCACAACTACTCCGACAACCCAGAGAGCCACTAAAAGGACGAAATCGGAGAATCGCTCGTCGGCCGGCAACGGAAAGAGGAAAGAGAAGCTCGGAGAACGAATCACAGCGCTCCAGCAGCTCGTTTCACCCTACGGAAAGACGGACACGGCATCGGTGCTTCACGAAGCGATGGGATACATCAGATTTCTGCAGGAGCAGGTTCAGGTGCTGTGCTCGCCTTACCTTCAACGCCTGGAGCCTCCTTCACAACCTGTACCTGGTGGAGTTGGAGAGGTAAAACAAGCAGCAGGAAGAAGCGACCTGAGGAGCAGAGGACTGTGCCTGGTTCCAATGGAGTACACAATGCACGTTGCGAACAGCAATGGTGCAGATTTTTGGTTACCCACCATGGCCAACACCAACATTAATCCTTGGTCATCTCCTTCAACCAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

28.84

Weight (kDa)

8.94

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	550
AccBSI	CCGCTC	1 cut(s)	135
AccII	CGCG	1 cut(s)	77
AciI	CCGC	5 cut(s)	5, 38, 77, 133, 297
AcoI	YGGCCR	4 cut(s)	78, 240, 423, 753
AfaI	GTAC	2 cut(s)	618, 701
AfeI	AGCGCT	1 cut(s)	471
AfiI	CCNNNNNNNGG	3 cut(s)	37, 396, 620
AgsI	TTSAA	2 cut(s)	590, 789
AjnI	CCWGG	3 cut(s)	594, 619, 684
AluBI	AGCT	6 cut(s)	57, 67, 270, 360, 451, 481
AluI	AGCT	6 cut(s)	57, 67, 270, 360, 451, 481
Alw21I	GWGCWC	1 cut(s)	578
AlwNI	CAGNNNCTG	1 cut(s)	571
Aor51HI	AGCGCT	1 cut(s)	471
AoxI	GGCC	4 cut(s)	78, 240, 423, 753
ApeKI	GCWGC	5 cut(s)	264, 267, 360, 478, 647
AseI	ATTAAT	1 cut(s)	768
AspLEI	GCGC	2 cut(s)	311, 472
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	52, 480
AvaII	GGWCC	1 cut(s)	28
AxyI	CCTNAGG	1 cut(s)	665
BalI	TGGCCA	1 cut(s)	755
Bbv12I	GWGCWC	1 cut(s)	578
BbvI	GCAGC	5 cut(s)	276, 279, 347, 490, 659
BccI	CCATC	2 cut(s)	263, 526
BceAI	ACGGC	3 cut(s)	86, 255, 525
BciT130I	CCWGG	3 cut(s)	596, 621, 686
BciVI	GTATCC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	551
BfoI	RGCGCY	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	550
BfuI	GTATCC	1 cut(s)	530
BisI	GCNGC	6 cut(s)	78, 265, 268, 361, 479, 648
BlsI	GCNGC	6 cut(s)	79, 266, 269, 362, 480, 649
Bme1390I	CCNGG	3 cut(s)	596, 621, 686
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	4 cut(s)	29, 351, 600, 690
BmrFI	CCNGG	3 cut(s)	596, 621, 686
BmsI	GCATC	2 cut(s)	312, 521
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	2 cut(s)	458, 617
BsaJI	CCNNGG	2 cut(s)	750, 773
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 396, 620
Bse118I	RCCGGY	1 cut(s)	425
Bse21I	CCTNAGG	1 cut(s)	665
Bse3DI	GCAATG	2 cut(s)	311, 730
BseBI	CCWGG	3 cut(s)	596, 621, 686
BseDI	CCNNGG	2 cut(s)	750, 773
BseLI	CCNNNNNNNGG	3 cut(s)	37, 396, 620
BseMI	GCAATG	2 cut(s)	311, 730
BseMII	CTCAG	2 cut(s)	77, 656
BseRI	GAGGAG	3 cut(s)	262, 265, 682
BseX3I	CGGCCG	2 cut(s)	78, 423
BseXI	GCAGC	5 cut(s)	276, 279, 347, 490, 659
BsgI	GTGCAG	2 cut(s)	346, 750
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	2 cut(s)	81, 426
BshFI	GGCC	4 cut(s)	80, 242, 425, 755
BsiEI	CGRYCG	2 cut(s)	81, 426
BsiHKAI	GWGCWC	1 cut(s)	578
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	2 cut(s)	41, 64
BslI	CCNNNNNNNGG	3 cut(s)	37, 396, 620
BsmFI	GGGAC	2 cut(s)	41, 64
BsnI	GGCC	4 cut(s)	80, 242, 425, 755
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp143I	GATC	1 cut(s)	354
Bsp19I	CCATGG	1 cut(s)	750
BspACI	CCGC	5 cut(s)	5, 38, 77, 133, 297
BspANI	GGCC	4 cut(s)	80, 242, 425, 755
BspCNI	CTCAG	2 cut(s)	76, 657
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	4 cut(s)	29, 351, 600, 690
BspMAI	CTGCAG	1 cut(s)	555
BspMI	ACCTGC	1 cut(s)	550
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	2 cut(s)	311, 730
BsrFI	RCCGGY	1 cut(s)	425
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	750, 773
BssMI	GATC	1 cut(s)	354
BssT1I	CCWWGG	2 cut(s)	750, 773
Bst2UI	CCWGG	3 cut(s)	596, 621, 686
Bst4CI	ACNGT	2 cut(s)	215, 681
Bst6I	CTCTTC	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	301, 427, 578
BstDEI	CTNAG	2 cut(s)	63, 665
BstDSI	CCRYGG	1 cut(s)	750
BstEII	GGTNACC	1 cut(s)	741
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	2 cut(s)	311, 472
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMCI	CGRYCG	2 cut(s)	81, 426
BstMWI	GCNNNNNNNGC	3 cut(s)	300, 478, 577
BstNI	CCWGG	3 cut(s)	596, 621, 686
BstNSI	RCATGY	1 cut(s)	264
BstPI	GGTNACC	1 cut(s)	741
BstSCI	CCNGG	3 cut(s)	594, 619, 684
BstSFI	CTRYAG	1 cut(s)	551
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	5 cut(s)	276, 279, 347, 490, 659
BstZI	CGGCCG	2 cut(s)	78, 423
Bsu36I	CCTNAGG	1 cut(s)	665
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	4 cut(s)	80, 242, 425, 755
BtgI	CCRYGG	1 cut(s)	750
BtgZI	GCGATG	1 cut(s)	545
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	3 cut(s)	301, 427, 578
CaiI	CAGNNNCTG	1 cut(s)	571
CfoI	GCGC	2 cut(s)	311, 472
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	619
Csp6I	GTAC	2 cut(s)	617, 700
CviAII	CATG	2 cut(s)	261, 751
CviQI	GTAC	2 cut(s)	617, 700
DdeI	CTNAG	2 cut(s)	63, 665
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EaeI	YGGCCR	4 cut(s)	78, 240, 423, 753
EagI	CGGCCG	2 cut(s)	78, 423
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	2 cut(s)	78, 423
Eco130I	CCWWGG	2 cut(s)	750, 773
Eco47I	GGWCC	1 cut(s)	28
Eco47III	AGCGCT	1 cut(s)	471
Eco52I	CGGCCG	2 cut(s)	78, 423
Eco81I	CCTNAGG	1 cut(s)	665
Eco91I	GGTNACC	1 cut(s)	741
EcoO65I	GGTNACC	1 cut(s)	741
EcoRII	CCWGG	3 cut(s)	594, 619, 684
EcoT14I	CCWWGG	2 cut(s)	750, 773
ErhI	CCWWGG	2 cut(s)	750, 773
FaeI	CATG	2 cut(s)	264, 754
FaiI	YATR	2 cut(s)	262, 752
FaqI	GGGAC	2 cut(s)	41, 64
FatI	CATG	2 cut(s)	260, 750
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	6 cut(s)	78, 265, 268, 361, 479, 648
Fsp4HI	GCNGC	6 cut(s)	78, 265, 268, 361, 479, 648
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	2 cut(s)	310, 471
GluI	GCNGC	6 cut(s)	78, 265, 268, 361, 479, 648
GsuI	CTGGAG	2 cut(s)	458, 617
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	4 cut(s)	80, 242, 425, 755
HapII	CCGG	1 cut(s)	426
HhaI	GCGC	2 cut(s)	311, 472
Hin1II	CATG	2 cut(s)	264, 754
Hin6I	GCGC	2 cut(s)	309, 470
HinP1I	GCGC	2 cut(s)	309, 470
HincII	GTYRAC	2 cut(s)	94, 211
HindII	GTYRAC	2 cut(s)	94, 211
HinfI	GANTC	2 cut(s)	412, 462
HpaI	GTTAAC	2 cut(s)	94, 211
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	2 cut(s)	52, 480
Hpy166II	GTNNAC	4 cut(s)	94, 106, 211, 702
Hpy188I	TCNGA	8 cut(s)	112, 185, 235, 354, 375, 409, 455, 545
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	4 cut(s)	94, 106, 211, 702
Hpy99I	CGWCG	3 cut(s)	86, 209, 424
HpyAV	CCTTC	3 cut(s)	596, 615, 795
HpyCH4III	ACNGT	2 cut(s)	215, 681
HpyCH4IV	ACGT	2 cut(s)	207, 711
HpyCH4V	TGCA	5 cut(s)	264, 363, 553, 709, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	300, 478, 577
HpyF3I	CTNAG	2 cut(s)	63, 665
HpySE526I	ACGT	2 cut(s)	207, 711
Hsp92II	CATG	2 cut(s)	264, 754
HspAI	GCGC	2 cut(s)	309, 470
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
KspAI	GTTAAC	2 cut(s)	94, 211
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	6 cut(s)	275, 355, 477, 556, 598, 669
Lsp1109I	GCAGC	5 cut(s)	276, 279, 347, 490, 659
LweI	GCATC	2 cut(s)	312, 521
MabI	ACCWGGT	1 cut(s)	619
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	2 cut(s)	207, 711
MaeIII	GTNAC	2 cut(s)	40, 741
MalI	GATC	1 cut(s)	356
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	1 cut(s)	354
MboII	GAAGA	3 cut(s)	64, 276, 666
MhlI	GDGCHC	1 cut(s)	578
MlsI	TGGCCA	1 cut(s)	755
MluCI	AATT	2 cut(s)	222, 793
MluNI	TGGCCA	1 cut(s)	755
MmeI	TCCRAC	3 cut(s)	135, 398, 610
MnlI	CCTC	9 cut(s)	16, 40, 283, 286, 432, 612, 628, 660, 668
Mox20I	TGGCCA	1 cut(s)	755
MroNI	GCCGGC	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	755
MseI	TTAA	5 cut(s)	93, 123, 159, 210, 768
Msp20I	TGGCCA	1 cut(s)	755
MspA1I	CMGCKG	1 cut(s)	360
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	3 cut(s)	596, 621, 686
MvaI	CCWGG	3 cut(s)	596, 621, 686
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	300, 478, 577
NaeI	GCCGGC	1 cut(s)	427
NcoI	CCATGG	1 cut(s)	750
NdeII	GATC	1 cut(s)	354
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	2 cut(s)	264, 754
NlaIV	GGNNCC	4 cut(s)	29, 351, 600, 690
NmuCI	GTSAC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 189
PdiI	GCCGGC	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	412, 462
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	6 cut(s)	79, 266, 269, 362, 480, 649
PshBI	ATTAAT	1 cut(s)	768
Psp6I	CCWGG	3 cut(s)	594, 619, 684
PspEI	GGTNACC	1 cut(s)	741
PspGI	CCWGG	3 cut(s)	594, 619, 684
PspN4I	GGNNCC	4 cut(s)	29, 351, 600, 690
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	555
PstNI	CAGNNNCTG	1 cut(s)	571
PsyI	GACNNNGTC	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	360
RsaI	GTAC	2 cut(s)	618, 701
RsaNI	GTAC	2 cut(s)	617, 700
SaqAI	TTAA	5 cut(s)	93, 123, 159, 210, 768
SatI	GCNGC	6 cut(s)	78, 265, 268, 361, 479, 648
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	3 cut(s)	596, 621, 686
SduI	GDGCHC	1 cut(s)	578
SexAI	ACCWGGT	1 cut(s)	619
SfaNI	GCATC	2 cut(s)	312, 521
SfcI	CTRYAG	1 cut(s)	551
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	2 cut(s)	222, 793
SsiI	CCGC	5 cut(s)	5, 38, 77, 133, 297
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	3 cut(s)	594, 619, 684
StyI	CCWWGG	2 cut(s)	750, 773
TaaI	ACNGT	2 cut(s)	215, 681
TaiI	ACGT	2 cut(s)	210, 714
TaqI	TCGA	2 cut(s)	21, 219
TasI	AATT	2 cut(s)	222, 793
TatI	WGTACW	1 cut(s)	699
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	412, 462
Tru1I	TTAA	5 cut(s)	93, 123, 159, 210, 768
Tru9I	TTAA	5 cut(s)	93, 123, 159, 210, 768
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	5 cut(s)	264, 267, 360, 478, 647
Tsp45I	GTSAC	1 cut(s)	40
TspGWI	ACGGA	4 cut(s)	268, 447, 510, 518
Tth111I	GACNNNGTC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	28
VspI	ATTAAT	1 cut(s)	768
XceI	RCATGY	1 cut(s)	264
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.