Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Forward (+)

9917301 .. 9919796

Gene Structure 2496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG063700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTGAAAAGGAGGGTTTTGAGGTGGACCAGCTTGGGGTCATAGAAGGGACGAGCTTCTCTCAGCTGCTCTACGAAGTCGAACATGATGTGGTGGGTCTTTGTGTAGATGATCATCAATCCCAAATCTTCAACTACAACACCAACAGCTGCTCCTCGCTTTATTCCGCCACCGACCTTAAAACCCCCAAAATGCTCTGTTTTGGGGACTTTCAGAACAAGGACAGGGACAACCACCACCTAGGGGAAATTGGGTTTCCGGAGATTTCGATTTCCCGGCCGCCGGCTCAGAAATCAGGGCTCACATGCAGCGATTCCTCCTCTGTTTCTTCCACCAGCACCAAAGCGGCCACTTCTTCCTCCAAGTCTAATAGTAATCAGAAGAAGCGAAACGGGGTGGCGCAAGAACAACAAGTTCAATGTGCAAGCACCACAACTCAGGCCGGTCAGAGAAGCTCTAAGAAGCCGAAAACGGACAAGCCCGCTGCCGGAAAGAGGAGAGAGAAGCTGGGAGAAAGAATCTCAGCACTGCAGCAACTCGTTTCACCCTTTGGAAAGACAGACACAGCCTCGGTGCTTCATGAAGCGATGGGATACATCAGGTTCCTGCACGACCAGGTTCAGGTTCTGTGTTCGCCATACCTGAAACGCTTGCCTTCATTACCTGAGGGAGGAGGAGATGGGGCGGAGAAGAAGGACGAAGAAGCGAGGAGTAATGACCTGAGAGGCCGGGGGCTGTGTTTGGTGCCGATGGAGCACACCGCACATTTGGCGAACAACAACGGTGCCGATTTCTGGTCACCGGCTACAATGGCGAGCAACAGCAACAACAATGTGTCATCGTCGACCGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

30.88

Weight (kDa)

6.45

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	745, 785
AccI	GTMKAC	1 cut(s)	845
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	6 cut(s)	168, 281, 347, 483, 686, 762
AcoI	YGGCCR	2 cut(s)	278, 348
AfiI	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 488, 495, 622, 671, 795
AgsI	TTSAA	2 cut(s)	133, 419
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	6 cut(s)	34, 57, 67, 150, 456, 508
AluI	AGCT	6 cut(s)	34, 57, 67, 150, 456, 508
Alw21I	GWGCWC	1 cut(s)	759
AlwNI	CAGNNNCTG	1 cut(s)	628
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	4 cut(s)	278, 348, 441, 727
ApeKI	GCWGC	5 cut(s)	67, 150, 309, 485, 532
AspA2I	CCTAGG	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	2 cut(s)	277, 731
AsuHPI	GGTGA	2 cut(s)	537, 792
AvaII	GGWCC	1 cut(s)	28
AvrII	CCTAGG	1 cut(s)	241
AxyI	CCTNAGG	1 cut(s)	666
BanI	GGYRCC	2 cut(s)	745, 785
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	759
BbvI	GCAGC	5 cut(s)	54, 137, 321, 472, 544
BccI	CCATC	3 cut(s)	583, 674, 745
BciT130I	CCWGG	1 cut(s)	617
BciVI	GTATCC	1 cut(s)	587
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	277, 731
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	587
BisI	GCNGC	7 cut(s)	68, 151, 281, 310, 348, 486, 533
BlnI	CCTAGG	1 cut(s)	241
BlsI	GCNGC	7 cut(s)	69, 152, 282, 311, 349, 487, 534
Bme1390I	CCNGG	3 cut(s)	277, 617, 731
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	3 cut(s)	605, 747, 787
BmrFI	CCNGG	3 cut(s)	277, 617, 731
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpuMI	CCSGG	2 cut(s)	277, 731
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	241, 570, 730
BsaWI	WCCGGW	2 cut(s)	259, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 488, 495, 622, 671, 795
Bse118I	RCCGGY	3 cut(s)	283, 443, 802
Bse21I	CCTNAGG	1 cut(s)	666
Bse8I	GATNNNNATC	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	3 cut(s)	241, 570, 730
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 488, 495, 622, 671, 795
BseMII	CTCAG	6 cut(s)	77, 302, 452, 537, 657, 713
BseRI	GAGGAG	6 cut(s)	145, 310, 511, 687, 690, 724
BseX3I	CGGCCG	1 cut(s)	278
BseXI	GCAGC	5 cut(s)	54, 137, 321, 472, 544
BseYI	CCCAGC	1 cut(s)	508
BsgI	GTGCAG	1 cut(s)	593
Bsh1285I	CGRYCG	2 cut(s)	281, 849
BshFI	GGCC	4 cut(s)	280, 350, 443, 729
BshNI	GGYRCC	2 cut(s)	745, 785
BsiEI	CGRYCG	2 cut(s)	281, 849
BsiHKAI	GWGCWC	1 cut(s)	759
BsiSI	CCGG	8 cut(s)	260, 277, 284, 444, 489, 730, 803, 849
BslFI	GGGAC	3 cut(s)	64, 221, 242
BslI	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 488, 495, 622, 671, 795
BsmFI	GGGAC	3 cut(s)	64, 221, 242
BsnI	GGCC	4 cut(s)	280, 350, 443, 729
Bsp1286I	GDGCHC	2 cut(s)	303, 759
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	6 cut(s)	168, 281, 347, 483, 686, 762
BspANI	GGCC	4 cut(s)	280, 350, 443, 729
BspCNI	CTCAG	6 cut(s)	76, 301, 451, 536, 658, 714
BspEI	TCCGGA	1 cut(s)	259
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	3 cut(s)	605, 747, 787
BspMAI	CTGCAG	1 cut(s)	534
BspT107I	GGYRCC	2 cut(s)	745, 785
BsrFI	RCCGGY	3 cut(s)	283, 443, 802
BssAI	RCCGGY	3 cut(s)	283, 443, 802
BssECI	CCNNGG	3 cut(s)	241, 570, 730
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	1 cut(s)	785
BstC8I	GCNNGC	5 cut(s)	285, 427, 483, 653, 817
BstDEI	CTNAG	7 cut(s)	63, 288, 438, 459, 523, 666, 722
BstEII	GGTNACC	1 cut(s)	798
BstENI	CCTNNNNNAGG	1 cut(s)	669
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMCI	CGRYCG	2 cut(s)	281, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	754, 770, 812
BstNI	CCWGG	1 cut(s)	617
BstNSI	RCATGY	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	798
BstSCI	CCNGG	3 cut(s)	275, 615, 729
BstSFI	CTRYAG	1 cut(s)	530
BstV1I	GCAGC	5 cut(s)	54, 137, 321, 472, 544
BstZI	CGGCCG	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	666
BsuI	GTATCC	1 cut(s)	587
BsuRI	GGCC	4 cut(s)	280, 350, 443, 729
BtgZI	GCGATG	1 cut(s)	602
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	5 cut(s)	285, 427, 483, 653, 817
CaiI	CAGNNNCTG	1 cut(s)	628
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	1 cut(s)	403
Cfr10I	RCCGGY	3 cut(s)	283, 443, 802
Cfr13I	GGNCC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	615
CviAII	CATG	3 cut(s)	86, 306, 581
DdeI	CTNAG	7 cut(s)	63, 288, 438, 459, 523, 666, 722
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	2 cut(s)	278, 348
EagI	CGGCCG	1 cut(s)	278
EciI	GGCGGA	2 cut(s)	157, 701
EclXI	CGGCCG	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	28
Eco52I	CGGCCG	1 cut(s)	278
Eco81I	CCTNAGG	1 cut(s)	666
Eco91I	GGTNACC	1 cut(s)	798
EcoNI	CCTNNNNNAGG	1 cut(s)	669
EcoO65I	GGTNACC	1 cut(s)	798
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	3 cut(s)	89, 309, 584
FaiI	YATR	5 cut(s)	44, 87, 307, 582, 640
FaqI	GGGAC	3 cut(s)	64, 221, 242
FatI	CATG	3 cut(s)	85, 305, 580
FauI	CCCGC	1 cut(s)	490
FbaI	TGATCA	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	845
Fnu4HI	GCNGC	7 cut(s)	68, 151, 281, 310, 348, 486, 533
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	7 cut(s)	68, 151, 281, 310, 348, 486, 533
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	7 cut(s)	68, 151, 281, 310, 348, 486, 533
GsaI	CCCAGC	1 cut(s)	512
HaeIII	GGCC	4 cut(s)	280, 350, 443, 729
HapII	CCGG	8 cut(s)	260, 277, 284, 444, 489, 730, 803, 849
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	3 cut(s)	89, 309, 584
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HincII	GTYRAC	1 cut(s)	846
HindII	GTYRAC	1 cut(s)	846
HinfI	GANTC	2 cut(s)	314, 519
HpaII	CCGG	8 cut(s)	260, 277, 284, 444, 489, 730, 803, 849
HphI	GGTGA	2 cut(s)	537, 792
Hpy166II	GTNNAC	2 cut(s)	28, 846
Hpy188I	TCNGA	4 cut(s)	216, 291, 381, 450
Hpy188III	TCNNGA	2 cut(s)	260, 581
Hpy8I	GTNNAC	2 cut(s)	28, 846
Hpy99I	CGWCG	1 cut(s)	847
HpyAV	CCTTC	3 cut(s)	41, 666, 688
HpyCH4III	ACNGT	1 cut(s)	785
HpyCH4V	TGCA	4 cut(s)	309, 425, 532, 610
HpyF10VI	GCNNNNNNNGC	3 cut(s)	754, 770, 812
HpyF3I	CTNAG	7 cut(s)	63, 288, 438, 459, 523, 666, 722
Hsp92II	CATG	3 cut(s)	89, 309, 584
HspAI	GCGC	1 cut(s)	401
Kpn2I	TCCGGA	1 cut(s)	259
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	2 cut(s)	158, 754
Lsp1109I	GCAGC	5 cut(s)	54, 137, 321, 472, 544
MabI	ACCWGGT	1 cut(s)	615
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	798
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	6 cut(s)	121, 321, 348, 394, 703, 713
MhlI	GDGCHC	2 cut(s)	303, 759
MluCI	AATT	1 cut(s)	249
MroI	TCCGGA	1 cut(s)	259
MroNI	GCCGGC	1 cut(s)	283
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	3 cut(s)	67, 150, 485
MspI	CCGG	8 cut(s)	260, 277, 284, 444, 489, 730, 803, 849
MspR9I	CCNGG	3 cut(s)	277, 617, 731
MvaI	CCWGG	1 cut(s)	617
MwoI	GCNNNNNNNGC	3 cut(s)	754, 770, 812
NaeI	GCCGGC	1 cut(s)	285
NciI	CCSGG	2 cut(s)	277, 731
NdeII	GATC	1 cut(s)	112
NgoMIV	GCCGGC	1 cut(s)	283
NlaIII	CATG	3 cut(s)	89, 309, 584
NlaIV	GGNNCC	3 cut(s)	605, 747, 787
NmuCI	GTSAC	1 cut(s)	798
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	1 cut(s)	580
PdiI	GCCGGC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	314, 519
PkrI	GCNGC	7 cut(s)	69, 152, 282, 311, 349, 487, 534
Psp6I	CCWGG	1 cut(s)	615
PspEI	GGTNACC	1 cut(s)	798
PspFI	CCCAGC	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	3 cut(s)	605, 747, 787
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	534
PstNI	CAGNNNCTG	1 cut(s)	628
PvuII	CAGCTG	2 cut(s)	67, 150
SalI	GTCGAC	1 cut(s)	844
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	7 cut(s)	68, 151, 281, 310, 348, 486, 533
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	3 cut(s)	277, 617, 731
SduI	GDGCHC	2 cut(s)	303, 759
SexAI	ACCWGGT	1 cut(s)	615
SfcI	CTRYAG	1 cut(s)	530
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	6 cut(s)	168, 281, 347, 483, 686, 762
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	3 cut(s)	275, 615, 729
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	785
TaqI	TCGA	3 cut(s)	81, 269, 845
TasI	AATT	1 cut(s)	249
TauI	GCSGC	2 cut(s)	283, 350
TfiI	GAWTC	2 cut(s)	314, 519
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	798
TseI	GCWGC	5 cut(s)	67, 150, 309, 485, 532
Tsp45I	GTSAC	1 cut(s)	798
TspDTI	ATGAA	3 cut(s)	569, 597, 648
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	534
VpaK11BI	GGWCC	1 cut(s)	28
XagI	CCTNNNNNAGG	1 cut(s)	669
XceI	RCATGY	1 cut(s)	309
XmaJI	CCTAGG	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	845
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.