Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Reverse (-)

15675795 .. 15678404

Gene Structure 2610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G136800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCCGAAAATGATGGTTTAGAGGGGGACCATTTGGCTGTCACAGAGGGGACTAGTTTCTCTCAGTTACTCTTCGCTGCTGATGAGGGTTGTGGTCTTGGCATGGACGACGAAACCTTTAACTACACCCATTCATCTGCTTATTCCACCCAGATTAAGCCACCCAAAATGCTCTGCTTCGGGAACTATGATCACAGCCATGGCGATGGTCTGGAAATTGGGTTTTCAGAGACTGCTAAGAAATCAGGGGTTACATGCAGCGATTCCTCCTCTGTTTATTCAACCAGCAACACAATCATCAACGCATTGCCCGAATCCAACAATAAAAGGAGAAATGGATTAGGCCAAGAGTCGGTGCAGTGTGCAAGCACCATCAGCACAACGACGACTGCAAGCCAGAGAACCTCCAAGAAGACGAAATCTGAGAATCCCACATCGACAGGCAATGCGAAGAGGAAAGAGAAGCTTGGAGAACGAATTGCAGCTCTGCAACAACTTGTATCACCCTTTGGCAAGACAGATACTGCATCAGTGCTTCACGAAGCGATGGGATACATCAGGTTCCTGCACGATCAGGTTCAGGTTCTGTGCTCGCCTTACCTGCAACGCCTGCCTTCATTACCTGATGGAGAGATGGAGGAAGCAAGAAAGGACCTGAGGAGCAGAGGACTGTGCCTGGCCCCTGTGGAGTACACAATGCACGTGGCAGACAACAATGGTGCTGATTTTTGGTCACCAGCCATGGCCAACAACAACAATAATGTTTCTTCAACCAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

261

Amino Acids

28.2

Weight (kDa)

5.52

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	609
AcoI	YGGCCR	2 cut(s)	3, 744
AcvI	CACGTG	1 cut(s)	703
AfaI	GTAC	1 cut(s)	692
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	282, 771
AhlI	ACTAGT	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	675
AluBI	AGCT	2 cut(s)	466, 485
AluI	AGCT	2 cut(s)	466, 485
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	1 cut(s)	224
AlwNI	CAGNNNCTG	3 cut(s)	233, 524, 586
AoxI	GGCC	4 cut(s)	3, 343, 678, 744
ApeKI	GCWGC	3 cut(s)	77, 258, 482
AspS9I	GGNCC	3 cut(s)	28, 652, 679
AsuHPI	GGTGA	2 cut(s)	495, 726
AvaII	GGWCC	2 cut(s)	28, 652
AxyI	CCTNAGG	1 cut(s)	656
BalI	TGGCCA	1 cut(s)	746
BbrPI	CACGTG	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	3 cut(s)	64, 270, 494
BccI	CCATC	6 cut(s)	8, 200, 380, 541, 620, 628
BciT130I	CCWGG	1 cut(s)	677
BciVI	GTATCC	1 cut(s)	545
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	224
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	609
BfuI	GTATCC	1 cut(s)	545
BisI	GCNGC	3 cut(s)	78, 259, 483
BlsI	GCNGC	3 cut(s)	79, 260, 484
Bme1390I	CCNGG	1 cut(s)	677
Bme18I	GGWCC	2 cut(s)	28, 652
BmgT120I	GGNCC	3 cut(s)	28, 652, 679
BmiI	GGNNCC	3 cut(s)	29, 563, 681
BmrFI	CCNGG	1 cut(s)	677
BmsI	GCATC	1 cut(s)	536
BpiI	GAAGAC	1 cut(s)	419
BsaAI	YACGTR	1 cut(s)	703
BsaJI	CCNNGG	2 cut(s)	199, 741
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse21I	CCTNAGG	1 cut(s)	656
Bse3DI	GCAATG	2 cut(s)	305, 451
BseBI	CCWGG	1 cut(s)	677
BseDI	CCNNGG	2 cut(s)	199, 741
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	2 cut(s)	305, 451
BseMII	CTCAG	3 cut(s)	77, 414, 647
BseRI	GAGGAG	2 cut(s)	259, 673
BseXI	GCAGC	3 cut(s)	64, 270, 494
BsgI	GTGCAG	2 cut(s)	377, 551
BshFI	GGCC	4 cut(s)	5, 345, 680, 746
BsiHKAI	GWGCWC	1 cut(s)	593
BslFI	GGGAC	2 cut(s)	41, 64
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	2 cut(s)	41, 64
BsnI	GGCC	4 cut(s)	5, 345, 680, 746
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp143I	GATC	2 cut(s)	190, 571
Bsp19I	CCATGG	2 cut(s)	199, 741
BspANI	GGCC	4 cut(s)	5, 345, 680, 746
BspCNI	CTCAG	3 cut(s)	76, 415, 648
BspLI	GGNNCC	3 cut(s)	29, 563, 681
BspMI	ACCTGC	1 cut(s)	609
BsrDI	GCAATG	2 cut(s)	305, 451
BssECI	CCNNGG	2 cut(s)	199, 741
BssMI	GATC	2 cut(s)	190, 571
BssT1I	CCWWGG	2 cut(s)	199, 741
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	1 cut(s)	672
Bst6I	CTCTTC	2 cut(s)	77, 446
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	4 cut(s)	367, 394, 593, 611
BstDEI	CTNAG	4 cut(s)	63, 237, 423, 656
BstDSI	CCRYGG	2 cut(s)	199, 741
BstEII	GGTNACC	1 cut(s)	732
BstKTI	GATC	2 cut(s)	193, 574
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	2 cut(s)	190, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	375, 601, 610
BstNI	CCWGG	1 cut(s)	677
BstNSI	RCATGY	1 cut(s)	258
BstPI	GGTNACC	1 cut(s)	732
BstSCI	CCNGG	1 cut(s)	675
BstV1I	GCAGC	3 cut(s)	64, 270, 494
BstV2I	GAAGAC	1 cut(s)	419
BstXI	CCANNNNNNTGG	1 cut(s)	206
Bsu36I	CCTNAGG	1 cut(s)	656
BsuI	GTATCC	1 cut(s)	545
BsuRI	GGCC	4 cut(s)	5, 345, 680, 746
BtgI	CCRYGG	2 cut(s)	199, 741
BtgZI	GCGATG	2 cut(s)	219, 560
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	2 cut(s)	365, 537
BveI	ACCTGC	1 cut(s)	609
Cac8I	GCNNGC	4 cut(s)	367, 394, 593, 611
CaiI	CAGNNNCTG	3 cut(s)	233, 524, 586
Cfr13I	GGNCC	3 cut(s)	28, 652, 679
Csp6I	GTAC	1 cut(s)	691
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	4 cut(s)	103, 200, 255, 742
CviQI	GTAC	1 cut(s)	691
DdeI	CTNAG	4 cut(s)	63, 237, 423, 656
DpnI	GATC	2 cut(s)	192, 573
DpnII	GATC	2 cut(s)	190, 571
EaeI	YGGCCR	2 cut(s)	3, 744
Eam1104I	CTCTTC	2 cut(s)	77, 446
EarI	CTCTTC	2 cut(s)	77, 446
Eco130I	CCWWGG	2 cut(s)	199, 741
Eco47I	GGWCC	2 cut(s)	28, 652
Eco72I	CACGTG	1 cut(s)	703
Eco81I	CCTNAGG	1 cut(s)	656
Eco91I	GGTNACC	1 cut(s)	732
EcoO109I	RGGNCCY	1 cut(s)	652
EcoO65I	GGTNACC	1 cut(s)	732
EcoRII	CCWGG	1 cut(s)	675
EcoT14I	CCWWGG	2 cut(s)	199, 741
ErhI	CCWWGG	2 cut(s)	199, 741
FaeI	CATG	4 cut(s)	106, 203, 258, 745
FaiI	YATR	5 cut(s)	104, 189, 201, 256, 743
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	2 cut(s)	41, 64
FatI	CATG	4 cut(s)	102, 199, 254, 741
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	78, 259, 483
Fsp4HI	GCNGC	3 cut(s)	78, 259, 483
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	3 cut(s)	78, 259, 483
HaeIII	GGCC	4 cut(s)	5, 345, 680, 746
Hin1II	CATG	4 cut(s)	106, 203, 258, 745
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	4 cut(s)	263, 314, 350, 427
HphI	GGTGA	2 cut(s)	495, 726
Hpy166II	GTNNAC	1 cut(s)	693
Hpy188I	TCNGA	2 cut(s)	229, 424
Hpy188III	TCNNGA	3 cut(s)	181, 212, 539
Hpy8I	GTNNAC	1 cut(s)	693
Hpy99I	CGWCG	2 cut(s)	113, 388
HpyAV	CCTTC	1 cut(s)	624
HpyCH4III	ACNGT	1 cut(s)	672
HpyCH4IV	ACGT	1 cut(s)	702
HpyF10VI	GCNNNNNNNGC	3 cut(s)	375, 601, 610
HpyF3I	CTNAG	4 cut(s)	63, 237, 423, 656
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	4 cut(s)	106, 203, 258, 745
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	190, 571
LmnI	GCTCC	1 cut(s)	660
Lsp1109I	GCAGC	3 cut(s)	64, 270, 494
LweI	GCATC	1 cut(s)	536
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	4 cut(s)	40, 66, 250, 732
MalI	GATC	2 cut(s)	192, 573
MboI	GATC	2 cut(s)	190, 571
MboII	GAAGA	4 cut(s)	64, 424, 463, 759
MhlI	GDGCHC	1 cut(s)	593
MlsI	TGGCCA	1 cut(s)	746
MluCI	AATT	2 cut(s)	216, 477
MluNI	TGGCCA	1 cut(s)	746
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	342
Mox20I	TGGCCA	1 cut(s)	746
MscI	TGGCCA	1 cut(s)	746
MseI	TTAA	2 cut(s)	120, 156
MslI	CAYNNNNRTG	2 cut(s)	198, 204
Msp20I	TGGCCA	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	677
MvaI	CCWGG	1 cut(s)	677
MwoI	GCNNNNNNNGC	3 cut(s)	375, 601, 610
NcoI	CCATGG	2 cut(s)	199, 741
NdeII	GATC	2 cut(s)	190, 571
NlaIII	CATG	4 cut(s)	106, 203, 258, 745
NlaIV	GGNNCC	3 cut(s)	29, 563, 681
NmuCI	GTSAC	2 cut(s)	40, 732
NspI	RCATGY	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	263, 314, 427
PkrI	GCNGC	3 cut(s)	79, 260, 484
PleI	GAGTC	1 cut(s)	358
PmaCI	CACGTG	1 cut(s)	703
PmlI	CACGTG	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	703
PpuMI	RGGWCCY	1 cut(s)	652
Psp5II	RGGWCCY	1 cut(s)	652
Psp6I	CCWGG	1 cut(s)	675
PspCI	CACGTG	1 cut(s)	703
PspEI	GGTNACC	1 cut(s)	732
PspGI	CCWGG	1 cut(s)	675
PspN4I	GGNNCC	3 cut(s)	29, 563, 681
PspPI	GGNCC	3 cut(s)	28, 652, 679
PspPPI	RGGWCCY	1 cut(s)	652
PstNI	CAGNNNCTG	3 cut(s)	233, 524, 586
RsaI	GTAC	1 cut(s)	692
RsaNI	GTAC	1 cut(s)	691
RseI	CAYNNNNRTG	2 cut(s)	198, 204
SaqAI	TTAA	2 cut(s)	120, 156
SatI	GCNGC	3 cut(s)	78, 259, 483
Sau3AI	GATC	2 cut(s)	190, 571
Sau96I	GGNCC	3 cut(s)	28, 652, 679
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	1 cut(s)	593
SfaNI	GCATC	1 cut(s)	536
SinI	GGWCC	2 cut(s)	28, 652
SmiMI	CAYNNNNRTG	2 cut(s)	198, 204
SpeI	ACTAGT	1 cut(s)	53
Sse9I	AATT	2 cut(s)	216, 477
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	675
StyI	CCWWGG	2 cut(s)	199, 741
TaaI	ACNGT	1 cut(s)	672
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	1 cut(s)	437
TasI	AATT	2 cut(s)	216, 477
TatI	WGTACW	1 cut(s)	690
TfiI	GAWTC	3 cut(s)	263, 314, 427
Tru1I	TTAA	2 cut(s)	120, 156
Tru9I	TTAA	2 cut(s)	120, 156
TscAI	CASTG	2 cut(s)	365, 537
TseFI	GTSAC	2 cut(s)	40, 732
TseI	GCWGC	3 cut(s)	77, 258, 482
Tsp45I	GTSAC	2 cut(s)	40, 732
TspDTI	ATGAA	2 cut(s)	123, 606
TspRI	CASTG	2 cut(s)	365, 537
VpaK11BI	GGWCC	2 cut(s)	28, 652
XceI	RCATGY	1 cut(s)	258
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.