Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Reverse (-)

61061956 .. 61064476

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTGAAAAGGAGGGTTTTGAGGTGGACCAGCTTGGGGTTATAGAAGGGACGAGCTTCTCCCAGCTACTCTACGAAGTCGAACATGATGTGGTGGGTCTTTCTGTAGATGATCACCAATCCCAAATCTTCAACTACAACACCAGCAGCTGTTCCTCGCTTTATTCCGCCACCGACCTTAAAACCCCCAAAATGCTCTGTTTCGGGGACTTTCAGAACAAGGACAGGGACAACCACCACCTAGGGGAAATTGGGTTTCCGGAGATTTCGATTTGCCGGCCGCCGGCTCAGAAATCAGGGCTCACATGCAGCGATTCCTCCTCTGTTTCTTCCACCAGCACTAAAGCGGTCATTTCTTCCTCCAAGGCTAGTAGTAATAAGAAGCGAAACGGGGTGGCGCAAGAGCAGGTTCAATGTGCAAGCACCACAACTCAGGACGGTGAGAGAAGCTCTAAGAAGCCGAAAACGGACAAGCCCGCTGCCGGAAAGAGGAGAGAGAAGCTGGGAGAAAGAATCTCAGCACTGCAGCAACTCGTTTCACCCTTTGGAAAGACAGACACAGCCTCAGTGCTTCATGAAGCGATGGGATACATCAGGTTCCTGCACGACCAGGTTCAGGTTTTGTGCTCGCCATACCTGCAACGCTTGCCTTCATTACCTGGAGGAGGAGATGGGGCGGAGAAGAAAGACGAAGAAGCGAGGAGTAATGACCTGAGAAGCCGGGGGCTGTGTTTGGTGCCGATGGAAGACACCGCACATTTGGCGAACAACAACGGTGCCGATTTCTGGTCACCGGCTACAATGGCGAACCACAACAACAACAATGTGTCATCGTCGACCGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

30.6

Weight (kDa)

5.92

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	397, 645
AccB1I	GGYRCC	2 cut(s)	736, 776
AccI	GTMKAC	1 cut(s)	836
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	6 cut(s)	168, 281, 347, 477, 677, 753
AcoI	YGGCCR	1 cut(s)	278
AfiI	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 482, 489, 616, 665, 786
AgsI	TTSAA	2 cut(s)	133, 413
AjnI	CCWGG	2 cut(s)	609, 658
AluBI	AGCT	6 cut(s)	34, 57, 67, 150, 450, 502
AluI	AGCT	6 cut(s)	34, 57, 67, 150, 450, 502
Alw21I	GWGCWC	1 cut(s)	629
AlwNI	CAGNNNCTG	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	4 cut(s)	147, 309, 479, 526
AspA2I	CCTAGG	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	722
AsuHPI	GGTGA	4 cut(s)	107, 452, 531, 783
AvaII	GGWCC	1 cut(s)	28
AvrII	CCTAGG	1 cut(s)	241
BanI	GGYRCC	2 cut(s)	736, 776
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	629
BbvI	GCAGC	4 cut(s)	159, 321, 466, 538
BccI	CCATC	3 cut(s)	577, 665, 736
BciT130I	CCWGG	2 cut(s)	611, 660
BciVI	GTATCC	1 cut(s)	581
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	722
BfaI	CTAG	2 cut(s)	242, 369
BfmI	CTRYAG	2 cut(s)	105, 524
BfuAI	ACCTGC	2 cut(s)	397, 645
BfuI	GTATCC	1 cut(s)	581
BisI	GCNGC	5 cut(s)	148, 281, 310, 480, 527
BlnI	CCTAGG	1 cut(s)	241
BlsI	GCNGC	5 cut(s)	149, 282, 311, 481, 528
Bme1390I	CCNGG	3 cut(s)	611, 660, 722
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	3 cut(s)	599, 738, 778
BmrFI	CCNGG	3 cut(s)	611, 660, 722
BpiI	GAAGAC	1 cut(s)	753
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
BpmI	CTGGAG	1 cut(s)	681
BpuMI	CCSGG	1 cut(s)	722
BsaJI	CCNNGG	3 cut(s)	241, 363, 721
BsaWI	WCCGGW	2 cut(s)	259, 839
Bsc4I	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 482, 489, 616, 665, 786
Bse118I	RCCGGY	3 cut(s)	276, 283, 793
BseAI	TCCGGA	1 cut(s)	259
BseBI	CCWGG	2 cut(s)	611, 660
BseDI	CCNNGG	3 cut(s)	241, 363, 721
BseLI	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 482, 489, 616, 665, 786
BseMII	CTCAG	5 cut(s)	302, 446, 531, 579, 704
BseRI	GAGGAG	5 cut(s)	310, 505, 678, 681, 715
BseX3I	CGGCCG	1 cut(s)	278
BseXI	GCAGC	4 cut(s)	159, 321, 466, 538
BseYI	CCCAGC	2 cut(s)	63, 502
BsgI	GTGCAG	1 cut(s)	587
Bsh1285I	CGRYCG	2 cut(s)	281, 840
BshFI	GGCC	1 cut(s)	280
BshNI	GGYRCC	2 cut(s)	736, 776
BsiEI	CGRYCG	2 cut(s)	281, 840
BsiHKAI	GWGCWC	1 cut(s)	629
BsiSI	CCGG	7 cut(s)	260, 277, 284, 483, 721, 794, 840
BslFI	GGGAC	3 cut(s)	64, 221, 242
BslI	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 482, 489, 616, 665, 786
BsmFI	GGGAC	3 cut(s)	64, 221, 242
BsnI	GGCC	1 cut(s)	280
Bsp1286I	GDGCHC	2 cut(s)	303, 629
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	6 cut(s)	168, 281, 347, 477, 677, 753
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	5 cut(s)	301, 445, 530, 578, 705
BspEI	TCCGGA	1 cut(s)	259
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	599, 738, 778
BspMAI	CTGCAG	1 cut(s)	528
BspMI	ACCTGC	2 cut(s)	397, 645
BspT107I	GGYRCC	2 cut(s)	736, 776
BsrFI	RCCGGY	3 cut(s)	276, 283, 793
BssAI	RCCGGY	3 cut(s)	276, 283, 793
BssECI	CCNNGG	3 cut(s)	241, 363, 721
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	2 cut(s)	241, 363
Bst2UI	CCWGG	2 cut(s)	611, 660
Bst4CI	ACNGT	2 cut(s)	440, 776
BstAPI	GCANNNNNTGC	1 cut(s)	646
BstC8I	GCNNGC	6 cut(s)	278, 285, 421, 477, 629, 647
BstDEI	CTNAG	6 cut(s)	288, 432, 453, 517, 565, 713
BstEII	GGTNACC	1 cut(s)	789
BstENI	CCTNNNNNAGG	1 cut(s)	663
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMCI	CGRYCG	2 cut(s)	281, 840
BstMWI	GCNNNNNNNGC	4 cut(s)	637, 646, 761, 803
BstNI	CCWGG	2 cut(s)	611, 660
BstNSI	RCATGY	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	789
BstSCI	CCNGG	3 cut(s)	609, 658, 720
BstSFI	CTRYAG	2 cut(s)	105, 524
BstV1I	GCAGC	4 cut(s)	159, 321, 466, 538
BstV2I	GAAGAC	1 cut(s)	753
BstZI	CGGCCG	1 cut(s)	278
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	1 cut(s)	280
BtgZI	GCGATG	1 cut(s)	596
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	2 cut(s)	521, 573
BveI	ACCTGC	2 cut(s)	397, 645
Cac8I	GCNNGC	6 cut(s)	278, 285, 421, 477, 629, 647
CaiI	CAGNNNCTG	1 cut(s)	150
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	1 cut(s)	400
Cfr10I	RCCGGY	3 cut(s)	276, 283, 793
Cfr13I	GGNCC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	609
CviAII	CATG	3 cut(s)	86, 306, 575
DdeI	CTNAG	6 cut(s)	288, 432, 453, 517, 565, 713
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	278
EagI	CGGCCG	1 cut(s)	278
EciI	GGCGGA	2 cut(s)	157, 692
EclXI	CGGCCG	1 cut(s)	278
Eco130I	CCWWGG	2 cut(s)	241, 363
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	28
Eco52I	CGGCCG	1 cut(s)	278
Eco91I	GGTNACC	1 cut(s)	789
EcoNI	CCTNNNNNAGG	1 cut(s)	663
EcoO65I	GGTNACC	1 cut(s)	789
EcoRII	CCWGG	2 cut(s)	609, 658
EcoT14I	CCWWGG	2 cut(s)	241, 363
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	2 cut(s)	241, 363
FaeI	CATG	3 cut(s)	89, 309, 578
FaiI	YATR	5 cut(s)	44, 87, 307, 576, 634
FaqI	GGGAC	3 cut(s)	64, 221, 242
FatI	CATG	3 cut(s)	85, 305, 574
FauI	CCCGC	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	836
Fnu4HI	GCNGC	5 cut(s)	148, 281, 310, 480, 527
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	5 cut(s)	148, 281, 310, 480, 527
FspBI	CTAG	2 cut(s)	242, 369
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	5 cut(s)	148, 281, 310, 480, 527
GsaI	CCCAGC	2 cut(s)	67, 506
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	7 cut(s)	260, 277, 284, 483, 721, 794, 840
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	3 cut(s)	89, 309, 578
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	837
HindII	GTYRAC	1 cut(s)	837
HinfI	GANTC	2 cut(s)	314, 513
HpaII	CCGG	7 cut(s)	260, 277, 284, 483, 721, 794, 840
HphI	GGTGA	4 cut(s)	107, 452, 531, 783
Hpy166II	GTNNAC	2 cut(s)	28, 837
Hpy188I	TCNGA	2 cut(s)	216, 291
Hpy188III	TCNNGA	3 cut(s)	260, 434, 575
Hpy8I	GTNNAC	2 cut(s)	28, 837
Hpy99I	CGWCG	1 cut(s)	838
HpyAV	CCTTC	2 cut(s)	41, 660
HpyCH4III	ACNGT	2 cut(s)	440, 776
HpyCH4V	TGCA	5 cut(s)	309, 419, 526, 604, 640
HpyF10VI	GCNNNNNNNGC	4 cut(s)	637, 646, 761, 803
HpyF3I	CTNAG	6 cut(s)	288, 432, 453, 517, 565, 713
Hsp92II	CATG	3 cut(s)	89, 309, 578
HspAI	GCGC	1 cut(s)	398
Kpn2I	TCCGGA	1 cut(s)	259
KroI	GCCGGC	2 cut(s)	276, 283
KroNI	GCCGGC	2 cut(s)	278, 285
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	112
Lsp1109I	GCAGC	4 cut(s)	159, 321, 466, 538
MabI	ACCWGGT	1 cut(s)	609
MaeI	CTAG	2 cut(s)	242, 369
MaeIII	GTNAC	1 cut(s)	789
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	6 cut(s)	121, 321, 348, 694, 704, 758
MhlI	GDGCHC	2 cut(s)	303, 629
MluCI	AATT	1 cut(s)	249
MroI	TCCGGA	1 cut(s)	259
MroNI	GCCGGC	2 cut(s)	276, 283
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	2 cut(s)	150, 479
MspI	CCGG	7 cut(s)	260, 277, 284, 483, 721, 794, 840
MspR9I	CCNGG	3 cut(s)	611, 660, 722
MvaI	CCWGG	2 cut(s)	611, 660
MwoI	GCNNNNNNNGC	4 cut(s)	637, 646, 761, 803
NaeI	GCCGGC	2 cut(s)	278, 285
NciI	CCSGG	1 cut(s)	722
NdeII	GATC	1 cut(s)	112
NgoMIV	GCCGGC	2 cut(s)	276, 283
NlaIII	CATG	3 cut(s)	89, 309, 578
NlaIV	GGNNCC	3 cut(s)	599, 738, 778
NmuCI	GTSAC	1 cut(s)	789
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	1 cut(s)	574
PdiI	GCCGGC	2 cut(s)	278, 285
PfeI	GAWTC	2 cut(s)	314, 513
PkrI	GCNGC	5 cut(s)	149, 282, 311, 481, 528
Psp6I	CCWGG	2 cut(s)	609, 658
PspEI	GGTNACC	1 cut(s)	789
PspFI	CCCAGC	2 cut(s)	63, 502
PspGI	CCWGG	2 cut(s)	609, 658
PspN4I	GGNNCC	3 cut(s)	599, 738, 778
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	528
PstNI	CAGNNNCTG	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	150
SalI	GTCGAC	1 cut(s)	835
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	5 cut(s)	148, 281, 310, 480, 527
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	3 cut(s)	611, 660, 722
SduI	GDGCHC	2 cut(s)	303, 629
SexAI	ACCWGGT	1 cut(s)	609
SfcI	CTRYAG	2 cut(s)	105, 524
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	6 cut(s)	168, 281, 347, 477, 677, 753
SspMI	CTAG	2 cut(s)	242, 369
StyD4I	CCNGG	3 cut(s)	609, 658, 720
StyI	CCWWGG	2 cut(s)	241, 363
TaaI	ACNGT	2 cut(s)	440, 776
TaqI	TCGA	3 cut(s)	81, 269, 836
TasI	AATT	1 cut(s)	249
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	314, 513
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	528, 573
TseFI	GTSAC	1 cut(s)	789
TseI	GCWGC	4 cut(s)	147, 309, 479, 526
Tsp45I	GTSAC	1 cut(s)	789
TspDTI	ATGAA	3 cut(s)	563, 591, 642
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	2 cut(s)	528, 573
VpaK11BI	GGWCC	1 cut(s)	28
XagI	CCTNNNNNAGG	1 cut(s)	663
XceI	RCATGY	1 cut(s)	309
XmaJI	CCTAGG	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	836
XspI	CTAG	2 cut(s)	242, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.