Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Forward (+)

6151661 .. 6154405

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG060200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCTGAAAAGGAGGGTTTTGAGGTGGACCAGCTTGGGGTCATAGAAGGGACGAGCTTCTCTCAGCTACTCTACGAAGTCGAGCATGATGTGGTGGGTCTCTCAGTAGATGATCATCAATCCCAAATCTTCAACTACAACACCAACAGCTGTTCCTCGCTTTATTCCGCCACCGACCTTAAAACCCCCAAAATGCTCTGTTTCGGGGACTTTCAGAACAAGGACAGGGACAACCACCACCTCGGGGAAATTGGGTTTCCGGAGATTTCGATTTCCCGGCCGCCGCCTCAGAAATCAGGGCTCACATGCAGCGATTCCTCCTCTGTTTCTTCCACCAGCACCAAAGCGGTCATTTCTACCTCCAAGTCTAATAGTAATGTAAGTGTTGCAAGTTCGCAATTGATTGAGTTTGTAATCATTATGTGGTGGTTGTTTTGGTCATGGTTTTGGGTTTGTTGGCAGAAAAAGCGAAACGGGGTGGCGCAAGAACAGGTTCAATGCGCAAGCACCACCACTCAGGCCGGTGAGAGAAGCTCTAAGAAGCCGAAAACTGACAAGCCCGCTGCCGGAAAGAGGAGAGAGAAGCTGGGAGAAAGAATCTCAGCACTCCAGCAACTCGTTTCACCCTTTGGAAAGACAGACACAGCCTCAGTGCTTCATGAAGCGATGGGATACATCAGGTTCCTGCACGAACAGGTTCAGGTTCTGTGCTCGCCATACCTGCAACGCTTGCCTTCATTACCTGTAAGTATTACTGGAACAAGAACAACCCACCAAGCCAAACCCAGCCAAAATCCAACGCACCTTTCTCTGTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

30.33

Weight (kDa)

7.08

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	502
Acc36I	ACCTGC	1 cut(s)	729
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	5 cut(s)	168, 281, 284, 347, 561
AcoI	YGGCCR	1 cut(s)	278
AfiI	CCNNNNNNNGG	4 cut(s)	37, 244, 566, 573
AgsI	TTSAA	2 cut(s)	133, 497
AjuI	GAANNNNNNNTTGG	2 cut(s)	790, 822
AluBI	AGCT	6 cut(s)	34, 57, 67, 150, 534, 586
AluI	AGCT	6 cut(s)	34, 57, 67, 150, 534, 586
Alw21I	GWGCWC	1 cut(s)	713
Alw26I	GTCTC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	706
Ama87I	CYCGRG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	2 cut(s)	278, 519
ApeKI	GCWGC	2 cut(s)	309, 563
Asp700I	GAANNNNTTC	2 cut(s)	492, 696
AspLEI	GCGC	2 cut(s)	484, 503
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	536, 615
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	713
BbvI	GCAGC	2 cut(s)	321, 550
BccI	CCATC	1 cut(s)	661
BciVI	GTATCC	1 cut(s)	665
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	729
BfuI	GTATCC	1 cut(s)	665
BisI	GCNGC	4 cut(s)	281, 284, 310, 564
BlsI	GCNGC	4 cut(s)	282, 285, 311, 565
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	683
BmrFI	CCNGG	1 cut(s)	277
BplI	GAGNNNNNCTC	4 cut(s)	46, 78, 518, 550
BpmI	CTGGAG	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	241
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 244, 566, 573
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	1 cut(s)	760
Bse8I	GATNNNNATC	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	4 cut(s)	37, 244, 566, 573
BseMII	CTCAG	6 cut(s)	77, 117, 302, 530, 615, 663
BseNI	ACTGG	1 cut(s)	760
BseRI	GAGGAG	2 cut(s)	310, 589
BseX3I	CGGCCG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	321, 550
BseYI	CCCAGC	2 cut(s)	586, 785
BsgI	GTGCAG	1 cut(s)	671
Bsh1285I	CGRYCG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	280, 521
BsiEI	CGRYCG	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	713
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	4 cut(s)	260, 277, 522, 567
BslFI	GGGAC	3 cut(s)	64, 221, 242
BslI	CCNNNNNNNGG	4 cut(s)	37, 244, 566, 573
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	3 cut(s)	64, 221, 242
BsnI	GGCC	2 cut(s)	280, 521
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	303, 713
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	5 cut(s)	168, 281, 284, 347, 561
BspANI	GGCC	2 cut(s)	280, 521
BspCNI	CTCAG	6 cut(s)	76, 116, 301, 529, 614, 662
BspEI	TCCGGA	1 cut(s)	259
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	683
BspMI	ACCTGC	1 cut(s)	729
BspTNI	GGTCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	760
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	730
BstC8I	GCNNGC	4 cut(s)	505, 561, 713, 731
BstDEI	CTNAG	7 cut(s)	63, 103, 288, 516, 537, 601, 649
BstHHI	GCGC	2 cut(s)	484, 503
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	112
BstMCI	CGRYCG	1 cut(s)	281
BstMWI	GCNNNNNNNGC	3 cut(s)	466, 721, 730
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	321, 550
BstZI	CGGCCG	1 cut(s)	278
BsuI	GTATCC	1 cut(s)	665
BsuRI	GGCC	2 cut(s)	280, 521
BtgZI	GCGATG	1 cut(s)	680
BtsIMutI	CAGTG	1 cut(s)	657
BveI	ACCTGC	1 cut(s)	729
Cac8I	GCNNGC	4 cut(s)	505, 561, 713, 731
CaiI	CAGNNNCTG	1 cut(s)	706
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	2 cut(s)	484, 503
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	28
CviAII	CATG	4 cut(s)	86, 306, 441, 659
DdeI	CTNAG	7 cut(s)	63, 103, 288, 516, 537, 601, 649
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	278
EagI	CGGCCG	1 cut(s)	278
EciI	GGCGGA	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	28
Eco52I	CGGCCG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	4 cut(s)	89, 309, 444, 662
FaiI	YATR	7 cut(s)	44, 87, 307, 422, 442, 660, 718
FaqI	GGGAC	3 cut(s)	64, 221, 242
FatI	CATG	4 cut(s)	85, 305, 440, 658
FauI	CCCGC	1 cut(s)	568
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	4 cut(s)	281, 284, 310, 564
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	4 cut(s)	281, 284, 310, 564
FspI	TGCGCA	1 cut(s)	502
GlaI	GCGC	2 cut(s)	483, 502
GluI	GCNGC	4 cut(s)	281, 284, 310, 564
GsaI	CCCAGC	2 cut(s)	590, 789
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	2 cut(s)	280, 521
HapII	CCGG	4 cut(s)	260, 277, 522, 567
HhaI	GCGC	2 cut(s)	484, 503
Hin1II	CATG	4 cut(s)	89, 309, 444, 662
Hin6I	GCGC	2 cut(s)	482, 501
HinP1I	GCGC	2 cut(s)	482, 501
HinfI	GANTC	2 cut(s)	314, 597
HpaII	CCGG	4 cut(s)	260, 277, 522, 567
HphI	GGTGA	2 cut(s)	536, 615
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	216, 291, 817
Hpy188III	TCNNGA	2 cut(s)	260, 659
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	41, 744
HpyCH4V	TGCA	4 cut(s)	309, 389, 688, 724
HpyF10VI	GCNNNNNNNGC	3 cut(s)	466, 721, 730
HpyF3I	CTNAG	7 cut(s)	63, 103, 288, 516, 537, 601, 649
Hsp92II	CATG	4 cut(s)	89, 309, 444, 662
HspAI	GCGC	2 cut(s)	482, 501
Kpn2I	TCCGGA	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	112
Lsp1109I	GCAGC	2 cut(s)	321, 550
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	2 cut(s)	121, 321
MfeI	CAATTG	1 cut(s)	398
MhlI	GDGCHC	2 cut(s)	303, 713
MluCI	AATT	2 cut(s)	249, 398
MmeI	TCCRAC	1 cut(s)	821
MroI	TCCGGA	1 cut(s)	259
MroXI	GAANNNNTTC	2 cut(s)	492, 696
MseI	TTAA	2 cut(s)	180, 820
MspA1I	CMGCKG	2 cut(s)	150, 563
MspI	CCGG	4 cut(s)	260, 277, 522, 567
MspR9I	CCNGG	1 cut(s)	277
MunI	CAATTG	1 cut(s)	398
MwoI	GCNNNNNNNGC	3 cut(s)	466, 721, 730
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	4 cut(s)	89, 309, 444, 662
NlaIV	GGNNCC	1 cut(s)	683
NsbI	TGCGCA	1 cut(s)	502
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	1 cut(s)	658
PdmI	GAANNNNTTC	2 cut(s)	492, 696
PfeI	GAWTC	2 cut(s)	314, 597
PkrI	GCNGC	4 cut(s)	282, 285, 311, 565
PspFI	CCCAGC	2 cut(s)	586, 785
PspN4I	GGNNCC	1 cut(s)	683
PspPI	GGNCC	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	706
PvuII	CAGCTG	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	180, 820
SatI	GCNGC	4 cut(s)	281, 284, 310, 564
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	2 cut(s)	303, 713
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	2 cut(s)	249, 398
SsiI	CCGC	5 cut(s)	168, 281, 284, 347, 561
StyD4I	CCNGG	1 cut(s)	275
TaqI	TCGA	2 cut(s)	81, 269
TasI	AATT	2 cut(s)	249, 398
TauI	GCSGC	2 cut(s)	283, 286
TfiI	GAWTC	2 cut(s)	314, 597
Tru1I	TTAA	2 cut(s)	180, 820
Tru9I	TTAA	2 cut(s)	180, 820
TscAI	CASTG	1 cut(s)	657
TseI	GCWGC	2 cut(s)	309, 563
TspDTI	ATGAA	3 cut(s)	647, 675, 726
TspRI	CASTG	1 cut(s)	657
VpaK11BI	GGWCC	1 cut(s)	28
XceI	RCATGY	1 cut(s)	309
XmnI	GAANNNNTTC	2 cut(s)	492, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.