Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000053.1

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Forward (+)

18628 .. 20391

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000053.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atggctgaaaaggagggttttgaggtggaccagcttggggtcatagaagggacgagcttctctcagctgctctacgaagtcgaacatgatgtagtgggtctttgtgtagatgatcatcaatcccaaatcttcaactacaacaccaacagctgttcctcgctttattccgccaccgaccttaaaacccccaaaatgctctgtttcggggactttcagaacaaggacagggacaaccaccacctaggggaaattgggttcccggagatttcgatttcccggccgccggctcagaaatcagggctcacatgcagcgattcctcctctgtttcttccaccagcaccaaagccgccacttcttcctccatgtctaatagtaataagaagcgaaacggggtggcgcaagaacagcaagttcaatgtgcaagcaccacaactcaggccggtcagagaagctctaagaagccgaaaacggacaagcccgctgccggaaagaagaagcgaaacggggtggcgcaagaacaacaagttcaatgtgcaagcgccacaactcaggccggtcagagaagctctaagaagccgaaaacggacaagcccgctgccggaaagaggagagagaagctgggagaaagaatctcagcactgcagcaactcgtttcaccctttggaaagacagacacagcctcggtgcttcatgaagcgatgggatacatcaggttcctgcacgaccaggttcaggttctgtgttcgccatacctgaaacgcttgccttcattacctgagggaggaggagatggggcggagaagaaggacgaagaagcgaggagtaatgacctgcgaagccgggggctgtgtttggtgccgatggagcacaccgcacatttggcgaacaacaacggtgccgatttctggtcaccggctacaatggcgagcaacagcaacaacaacaatgtgtcatcgtcgaccggatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

34.9

Weight (kDa)

8.53

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	840
AccB1I	GGYRCC	2 cut(s)	856, 896
AccI	GTMKAC	1 cut(s)	959
AciI	CCGC	7 cut(s)	168, 281, 348, 480, 594, 797, 873
AcoI	YGGCCR	1 cut(s)	278
AfiI	CCNNNNNNNGG	9 cut(s)	37, 244, 283, 485, 599, 606, 733, 782, 906
AgsI	TTSAA	3 cut(s)	133, 416, 530
AjnI	CCWGG	1 cut(s)	726
AloI	GAACNNNNNNTCC	2 cut(s)	239, 271
AluBI	AGCT	7 cut(s)	34, 57, 67, 150, 453, 567, 619
AluI	AGCT	7 cut(s)	34, 57, 67, 150, 453, 567, 619
Alw21I	GWGCWC	1 cut(s)	870
AlwNI	CAGNNNCTG	1 cut(s)	739
AoxI	GGCC	3 cut(s)	278, 438, 552
ApeKI	GCWGC	5 cut(s)	67, 309, 482, 596, 643
AspA2I	CCTAGG	1 cut(s)	241
AspLEI	GCGC	3 cut(s)	400, 514, 542
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	3 cut(s)	260, 277, 842
AsuHPI	GGTGA	2 cut(s)	648, 903
AvaII	GGWCC	1 cut(s)	28
AvrII	CCTAGG	1 cut(s)	241
AxyI	CCTNAGG	1 cut(s)	777
BanI	GGYRCC	2 cut(s)	856, 896
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	5 cut(s)	54, 321, 469, 583, 655
BccI	CCATC	3 cut(s)	694, 785, 856
BciT130I	CCWGG	1 cut(s)	728
BciVI	GTATCC	1 cut(s)	698
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	3 cut(s)	260, 277, 842
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	641
BfoI	RGCGCY	1 cut(s)	543
BfuAI	ACCTGC	1 cut(s)	840
BfuI	GTATCC	1 cut(s)	698
BisI	GCNGC	7 cut(s)	68, 281, 310, 348, 483, 597, 644
BlnI	CCTAGG	1 cut(s)	241
BlsI	GCNGC	7 cut(s)	69, 282, 311, 349, 484, 598, 645
Bme1390I	CCNGG	4 cut(s)	260, 277, 728, 842
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	4 cut(s)	257, 716, 858, 898
BmrFI	CCNGG	4 cut(s)	260, 277, 728, 842
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpuMI	CCSGG	3 cut(s)	260, 277, 842
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	241, 681, 841
BsaWI	WCCGGW	1 cut(s)	962
Bsc4I	CCNNNNNNNGG	9 cut(s)	37, 244, 283, 485, 599, 606, 733, 782, 906
Bse118I	RCCGGY	4 cut(s)	283, 440, 554, 913
Bse21I	CCTNAGG	1 cut(s)	777
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	728
BseDI	CCNNGG	3 cut(s)	241, 681, 841
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	9 cut(s)	37, 244, 283, 485, 599, 606, 733, 782, 906
BseMII	CTCAG	6 cut(s)	77, 302, 449, 563, 648, 768
BseRI	GAGGAG	5 cut(s)	310, 622, 798, 801, 835
BseX3I	CGGCCG	1 cut(s)	278
BseXI	GCAGC	5 cut(s)	54, 321, 469, 583, 655
BseYI	CCCAGC	1 cut(s)	619
BsgI	GTGCAG	1 cut(s)	704
Bsh1285I	CGRYCG	2 cut(s)	281, 963
BshFI	GGCC	3 cut(s)	280, 440, 554
BshNI	GGYRCC	2 cut(s)	856, 896
BsiEI	CGRYCG	2 cut(s)	281, 963
BsiHKAI	GWGCWC	1 cut(s)	870
BslFI	GGGAC	3 cut(s)	64, 221, 242
BslI	CCNNNNNNNGG	9 cut(s)	37, 244, 283, 485, 599, 606, 733, 782, 906
BsmFI	GGGAC	3 cut(s)	64, 221, 242
BsnI	GGCC	3 cut(s)	280, 440, 554
Bsp1286I	GDGCHC	2 cut(s)	303, 870
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	7 cut(s)	168, 281, 348, 480, 594, 797, 873
BspANI	GGCC	3 cut(s)	280, 440, 554
BspCNI	CTCAG	6 cut(s)	76, 301, 448, 562, 647, 769
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	4 cut(s)	257, 716, 858, 898
BspMAI	CTGCAG	1 cut(s)	645
BspMI	ACCTGC	1 cut(s)	840
BspT107I	GGYRCC	2 cut(s)	856, 896
BsrFI	RCCGGY	4 cut(s)	283, 440, 554, 913
BssAI	RCCGGY	4 cut(s)	283, 440, 554, 913
BssECI	CCNNGG	3 cut(s)	241, 681, 841
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	728
Bst4CI	ACNGT	1 cut(s)	896
BstC8I	GCNNGC	7 cut(s)	285, 424, 480, 538, 594, 764, 928
BstDEI	CTNAG	8 cut(s)	63, 288, 435, 456, 549, 570, 634, 777
BstEII	GGTNACC	1 cut(s)	909
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	3 cut(s)	400, 514, 542
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMCI	CGRYCG	2 cut(s)	281, 963
BstMWI	GCNNNNNNNGC	4 cut(s)	406, 865, 881, 923
BstNI	CCWGG	1 cut(s)	728
BstNSI	RCATGY	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	909
BstSCI	CCNGG	4 cut(s)	258, 275, 726, 840
BstSFI	CTRYAG	1 cut(s)	641
BstV1I	GCAGC	5 cut(s)	54, 321, 469, 583, 655
BstZI	CGGCCG	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	777
BsuI	GTATCC	1 cut(s)	698
BsuRI	GGCC	3 cut(s)	280, 440, 554
BtgZI	GCGATG	1 cut(s)	713
BtsI	GCAGTG	1 cut(s)	638
BtsIMutI	CAGTG	1 cut(s)	638
BveI	ACCTGC	1 cut(s)	840
Cac8I	GCNNGC	7 cut(s)	285, 424, 480, 538, 594, 764, 928
CaiI	CAGNNNCTG	1 cut(s)	739
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	3 cut(s)	400, 514, 542
Cfr10I	RCCGGY	4 cut(s)	283, 440, 554, 913
Cfr13I	GGNCC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	726
CviAII	CATG	4 cut(s)	86, 306, 364, 692
DdeI	CTNAG	8 cut(s)	63, 288, 435, 456, 549, 570, 634, 777
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	278
EagI	CGGCCG	1 cut(s)	278
EciI	GGCGGA	2 cut(s)	157, 812
EclXI	CGGCCG	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	28
Eco52I	CGGCCG	1 cut(s)	278
Eco81I	CCTNAGG	1 cut(s)	777
Eco91I	GGTNACC	1 cut(s)	909
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoO65I	GGTNACC	1 cut(s)	909
EcoRII	CCWGG	1 cut(s)	726
EcoT14I	CCWWGG	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	4 cut(s)	89, 309, 367, 695
FaiI	YATR	6 cut(s)	44, 87, 307, 365, 693, 751
FaqI	GGGAC	3 cut(s)	64, 221, 242
FatI	CATG	4 cut(s)	85, 305, 363, 691
FauI	CCCGC	2 cut(s)	487, 601
FbaI	TGATCA	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	959
Fnu4HI	GCNGC	7 cut(s)	68, 281, 310, 348, 483, 597, 644
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	7 cut(s)	68, 281, 310, 348, 483, 597, 644
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	3 cut(s)	399, 513, 541
GluI	GCNGC	7 cut(s)	68, 281, 310, 348, 483, 597, 644
GsaI	CCCAGC	1 cut(s)	623
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	280, 440, 554
HhaI	GCGC	3 cut(s)	400, 514, 542
Hin1II	CATG	4 cut(s)	89, 309, 367, 695
Hin6I	GCGC	3 cut(s)	398, 512, 540
HinP1I	GCGC	3 cut(s)	398, 512, 540
HincII	GTYRAC	1 cut(s)	960
HindII	GTYRAC	1 cut(s)	960
HinfI	GANTC	2 cut(s)	314, 630
HphI	GGTGA	2 cut(s)	648, 903
Hpy166II	GTNNAC	2 cut(s)	28, 960
Hpy188I	TCNGA	4 cut(s)	216, 291, 447, 561
Hpy188III	TCNNGA	1 cut(s)	692
Hpy8I	GTNNAC	2 cut(s)	28, 960
Hpy99I	CGWCG	1 cut(s)	961
HpyAV	CCTTC	3 cut(s)	41, 777, 799
HpyCH4III	ACNGT	1 cut(s)	896
HpyCH4V	TGCA	5 cut(s)	309, 422, 536, 643, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	406, 865, 881, 923
HpyF3I	CTNAG	8 cut(s)	63, 288, 435, 456, 549, 570, 634, 777
Hsp92II	CATG	4 cut(s)	89, 309, 367, 695
HspAI	GCGC	3 cut(s)	398, 512, 540
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	865
Lsp1109I	GCAGC	5 cut(s)	54, 321, 469, 583, 655
MabI	ACCWGGT	1 cut(s)	726
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	909
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	6 cut(s)	121, 321, 348, 505, 814, 824
MhlI	GDGCHC	2 cut(s)	303, 870
MluCI	AATT	1 cut(s)	249
MroNI	GCCGGC	1 cut(s)	283
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	4 cut(s)	67, 150, 482, 596
MspR9I	CCNGG	4 cut(s)	260, 277, 728, 842
MvaI	CCWGG	1 cut(s)	728
MwoI	GCNNNNNNNGC	4 cut(s)	406, 865, 881, 923
NaeI	GCCGGC	1 cut(s)	285
NciI	CCSGG	3 cut(s)	260, 277, 842
NdeII	GATC	1 cut(s)	112
NgoMIV	GCCGGC	1 cut(s)	283
NlaIII	CATG	4 cut(s)	89, 309, 367, 695
NlaIV	GGNNCC	4 cut(s)	257, 716, 858, 898
NmuCI	GTSAC	1 cut(s)	909
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	1 cut(s)	691
PdiI	GCCGGC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	314, 630
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	7 cut(s)	69, 282, 311, 349, 484, 598, 645
Psp6I	CCWGG	1 cut(s)	726
PspEI	GGTNACC	1 cut(s)	909
PspFI	CCCAGC	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	4 cut(s)	257, 716, 858, 898
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	645
PstNI	CAGNNNCTG	1 cut(s)	739
PvuII	CAGCTG	2 cut(s)	67, 150
SalI	GTCGAC	1 cut(s)	958
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	7 cut(s)	68, 281, 310, 348, 483, 597, 644
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	4 cut(s)	260, 277, 728, 842
SduI	GDGCHC	2 cut(s)	303, 870
SexAI	ACCWGGT	1 cut(s)	726
SfcI	CTRYAG	1 cut(s)	641
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	7 cut(s)	168, 281, 348, 480, 594, 797, 873
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	4 cut(s)	258, 275, 726, 840
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	896
TaqI	TCGA	3 cut(s)	81, 269, 959
TasI	AATT	1 cut(s)	249
TauI	GCSGC	2 cut(s)	283, 350
TfiI	GAWTC	2 cut(s)	314, 630
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	645
TseFI	GTSAC	1 cut(s)	909
TseI	GCWGC	5 cut(s)	67, 309, 482, 596, 643
Tsp45I	GTSAC	1 cut(s)	909
TspDTI	ATGAA	3 cut(s)	680, 708, 759
TspGWI	ACGGA	2 cut(s)	485, 599
TspRI	CASTG	1 cut(s)	645
VpaK11BI	GGWCC	1 cut(s)	28
XagI	CCTNNNNNAGG	1 cut(s)	780
XceI	RCATGY	1 cut(s)	309
XmaJI	CCTAGG	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	959
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.