Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Reverse (-)

15962012 .. 15966371

Gene Structure 4360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1098900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAAATGGCGGAAAATGGTGGGTTCGAGGGGGACCATTTGGCGGTGACAGAGGGCCCCGGTTTCTCTCAGCTACTCTTCCCGGCTGACGAAGTCGTGAACCTTGCCGTGGACTCCGACCAGACCTTTAACTACACCCGCTCGTCTACTTATCCCACCCAGATTAAGCCACCCAAAATCCTCTGCTTCGGAAACTACGACCAAACCCACGGAAACGGCGTGGAAATTGAGTTTTCGGAAACCGCCAAGAAATCGGCTGCCGCATGCAGCGATTCCTCATCGGTTTCTTCCACCGGCACCGCCAGCATCAACGCCATGCCCAAGTCCAACAATAAAAGGCAAAAGGGTTCGGCTCCGATCAGCACCACAGCTACTCCTCCAACCCAGAGAGCCGCTAAAAAGACGAAATCCGAGAATCCCACATCGGCCGGCAACGGAAAGAGGAAAGAGAGGCTTGGAGAACGAATCACAGCGCTACAGAAGCTCGTTTCACCGTACGGCAAGACAGACACGGCATCAGTGCTTCACGAAGCGATGGGATACATCAGATTTCTGCAGGAGCAGGTTCAGGTGCTGTACTCACCTTACCTTCAACGCCTGCCTCCTTCTGTACCTGTCCATGGTGGAGAGGTGAAACAAGAAGGAAGAAGAAGCGAGCTAAGGAGCCAAGGACTGTGCCTGGTCCCAATGGAGTACACAACGCATGCGGGGAACAGCAACGGTGCGGACTTTTGGTCACCGGCCATGGCCAACATTTACGATGTGTCATCTCCTTCAACCAAATATGGAATGGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

28.74

Weight (kDa)

7.69

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	296
AccBSI	CCGCTC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	146
AciI	CCGC	9 cut(s)	11, 44, 139, 243, 261, 300, 393, 707, 725
AcoI	YGGCCR	3 cut(s)	426, 741, 747
AfaI	GTAC	4 cut(s)	497, 578, 612, 695
AfeI	AGCGCT	1 cut(s)	474
AfiI	CCNNNNNNNGG	3 cut(s)	43, 109, 620
AgsI	TTSAA	2 cut(s)	593, 777
AhdI	GACNNNNNGTC	1 cut(s)	733
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	4 cut(s)	73, 371, 484, 658
AluI	AGCT	4 cut(s)	73, 371, 484, 658
AlwNI	CAGNNNCTG	1 cut(s)	574
Aor51HI	AGCGCT	1 cut(s)	474
AoxI	GGCC	4 cut(s)	55, 426, 741, 747
ApaI	GGGCCC	1 cut(s)	59
ApeKI	GCWGC	2 cut(s)	257, 267
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	4 cut(s)	34, 55, 56, 682
AsuC2I	CCSGG	2 cut(s)	60, 83
AsuHPI	GGTGA	5 cut(s)	58, 483, 573, 643, 729
AvaII	GGWCC	2 cut(s)	34, 682
BaeGI	GKGCMC	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	749
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	244, 279
BccI	CCATC	1 cut(s)	529
BceAI	ACGGC	4 cut(s)	92, 232, 514, 528
BciT130I	CCWGG	1 cut(s)	680
BciVI	GTATCC	1 cut(s)	533
BcnI	CCSGG	2 cut(s)	60, 83
BfaI	CTAG	1 cut(s)	799
BfmI	CTRYAG	2 cut(s)	476, 554
BfoI	RGCGCY	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	553
BfuI	GTATCC	1 cut(s)	533
BisI	GCNGC	4 cut(s)	258, 261, 268, 393
BlsI	GCNGC	4 cut(s)	259, 262, 269, 394
Bme1390I	CCNGG	3 cut(s)	60, 83, 680
Bme18I	GGWCC	2 cut(s)	34, 682
BmeRI	GACNNNNNGTC	1 cut(s)	733
BmgT120I	GGNCC	4 cut(s)	34, 55, 56, 682
BmiI	GGNNCC	7 cut(s)	35, 57, 58, 298, 354, 665, 684
BmrFI	CCNGG	3 cut(s)	60, 83, 680
BmsI	GCATC	2 cut(s)	315, 524
Bpu10I	CCTNAGC	1 cut(s)	659
BpuMI	CCSGG	2 cut(s)	60, 83
BsaJI	CCNNGG	6 cut(s)	58, 108, 208, 619, 667, 744
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 109, 620
Bse118I	RCCGGY	3 cut(s)	293, 428, 739
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	6 cut(s)	58, 108, 208, 619, 667, 744
BseLI	CCNNNNNNNGG	3 cut(s)	43, 109, 620
BseMII	CTCAG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	59
BseX3I	CGGCCG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	244, 279
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	4 cut(s)	57, 428, 743, 749
BshNI	GGYRCC	1 cut(s)	296
BsiEI	CGRYCG	1 cut(s)	429
BsiSI	CCGG	5 cut(s)	60, 83, 294, 429, 740
BsiWI	CGTACG	1 cut(s)	495
BslFI	GGGAC	2 cut(s)	47, 668
BslI	CCNNNNNNNGG	3 cut(s)	43, 109, 620
BsmFI	GGGAC	2 cut(s)	47, 668
BsnI	GGCC	4 cut(s)	57, 428, 743, 749
Bsp120I	GGGCCC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	357
Bsp19I	CCATGG	2 cut(s)	619, 744
BspACI	CCGC	9 cut(s)	11, 44, 139, 243, 261, 300, 393, 707, 725
BspANI	GGCC	4 cut(s)	57, 428, 743, 749
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	7 cut(s)	35, 57, 58, 298, 354, 665, 684
BspMAI	CTGCAG	1 cut(s)	558
BspMI	ACCTGC	1 cut(s)	553
BspT107I	GGYRCC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	141
BsrFI	RCCGGY	3 cut(s)	293, 428, 739
BssAI	RCCGGY	3 cut(s)	293, 428, 739
BssECI	CCNNGG	6 cut(s)	58, 108, 208, 619, 667, 744
BssMI	GATC	1 cut(s)	357
BssT1I	CCWWGG	3 cut(s)	619, 667, 744
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	3 cut(s)	495, 675, 722
Bst6I	CTCTTC	1 cut(s)	83
BstC8I	GCNNGC	6 cut(s)	265, 304, 430, 599, 656, 705
BstDEI	CTNAG	2 cut(s)	69, 659
BstDSI	CCRYGG	4 cut(s)	108, 208, 619, 744
BstEII	GGTNACC	1 cut(s)	735
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	1 cut(s)	360
BstMBI	GATC	1 cut(s)	357
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 481
BstNI	CCWGG	1 cut(s)	680
BstNSI	RCATGY	2 cut(s)	267, 707
BstPI	GGTNACC	1 cut(s)	735
BstSCI	CCNGG	3 cut(s)	58, 81, 678
BstSFI	CTRYAG	2 cut(s)	476, 554
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	244, 279
BstZI	CGGCCG	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	533
BsuRI	GGCC	4 cut(s)	57, 428, 743, 749
BtgI	CCRYGG	4 cut(s)	108, 208, 619, 744
BtgZI	GCGATG	1 cut(s)	548
BtsIMutI	CAGTG	1 cut(s)	525
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	6 cut(s)	265, 304, 430, 599, 656, 705
CaiI	CAGNNNCTG	1 cut(s)	574
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	3 cut(s)	293, 428, 739
Cfr13I	GGNCC	4 cut(s)	34, 55, 56, 682
Csp6I	GTAC	4 cut(s)	496, 577, 611, 694
CviAII	CATG	5 cut(s)	264, 316, 620, 704, 745
CviQI	GTAC	4 cut(s)	496, 577, 611, 694
DdeI	CTNAG	2 cut(s)	69, 659
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
DriI	GACNNNNNGTC	1 cut(s)	733
EaeI	YGGCCR	3 cut(s)	426, 741, 747
EagI	CGGCCG	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	83
Eam1105I	GACNNNNNGTC	1 cut(s)	733
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	26
EclXI	CGGCCG	1 cut(s)	426
Eco130I	CCWWGG	3 cut(s)	619, 667, 744
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	34, 682
Eco47III	AGCGCT	1 cut(s)	474
Eco52I	CGGCCG	1 cut(s)	426
Eco91I	GGTNACC	1 cut(s)	735
EcoO109I	RGGNCCY	2 cut(s)	55, 56
EcoO65I	GGTNACC	1 cut(s)	735
EcoRII	CCWGG	1 cut(s)	678
EcoT14I	CCWWGG	3 cut(s)	619, 667, 744
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	3 cut(s)	619, 667, 744
FaeI	CATG	5 cut(s)	267, 319, 623, 707, 748
FaiI	YATR	6 cut(s)	265, 317, 621, 705, 746, 786
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	2 cut(s)	47, 668
FatI	CATG	5 cut(s)	263, 315, 619, 703, 744
FauI	CCCGC	2 cut(s)	146, 700
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	4 cut(s)	258, 261, 268, 393
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	4 cut(s)	258, 261, 268, 393
FspBI	CTAG	1 cut(s)	799
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	4 cut(s)	258, 261, 268, 393
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	4 cut(s)	57, 428, 743, 749
HapII	CCGG	5 cut(s)	60, 83, 294, 429, 740
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	5 cut(s)	267, 319, 623, 707, 748
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	4 cut(s)	113, 272, 415, 465
HpaII	CCGG	5 cut(s)	60, 83, 294, 429, 740
HphI	GGTGA	5 cut(s)	58, 483, 573, 643, 729
Hpy166II	GTNNAC	4 cut(s)	100, 112, 147, 696
Hpy188I	TCNGA	6 cut(s)	118, 191, 238, 357, 412, 548
Hpy188III	TCNNGA	2 cut(s)	97, 527
Hpy8I	GTNNAC	4 cut(s)	100, 112, 147, 696
HpyAV	CCTTC	4 cut(s)	599, 615, 635, 783
HpyCH4III	ACNGT	3 cut(s)	495, 675, 722
HpyCH4V	TGCA	2 cut(s)	267, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 481
HpyF3I	CTNAG	2 cut(s)	69, 659
Hsp92II	CATG	5 cut(s)	267, 319, 623, 707, 748
HspAI	GCGC	1 cut(s)	473
KroI	GCCGGC	1 cut(s)	428
KroNI	GCCGGC	1 cut(s)	430
Kzo9I	GATC	1 cut(s)	357
LmnI	GCTCC	3 cut(s)	358, 559, 663
Lsp1109I	GCAGC	2 cut(s)	244, 279
LweI	GCATC	2 cut(s)	315, 524
MaeI	CTAG	1 cut(s)	799
MaeIII	GTNAC	2 cut(s)	46, 735
MalI	GATC	1 cut(s)	359
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	1 cut(s)	357
MboII	GAAGA	4 cut(s)	70, 279, 657, 660
MhlI	GDGCHC	1 cut(s)	59
MlsI	TGGCCA	1 cut(s)	749
MluCI	AATT	1 cut(s)	225
MluNI	TGGCCA	1 cut(s)	749
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	3 cut(s)	141, 351, 404
MnlI	CCTC	9 cut(s)	22, 46, 191, 286, 387, 435, 444, 612, 622
Mox20I	TGGCCA	1 cut(s)	749
MroNI	GCCGGC	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	749
MseI	TTAA	2 cut(s)	129, 165
Msp20I	TGGCCA	1 cut(s)	749
MspI	CCGG	5 cut(s)	60, 83, 294, 429, 740
MspR9I	CCNGG	3 cut(s)	60, 83, 680
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	2 cut(s)	303, 481
NaeI	GCCGGC	1 cut(s)	430
NciI	CCSGG	2 cut(s)	60, 83
NcoI	CCATGG	2 cut(s)	619, 744
NdeII	GATC	1 cut(s)	357
NgoMIV	GCCGGC	1 cut(s)	428
NlaIII	CATG	5 cut(s)	267, 319, 623, 707, 748
NlaIV	GGNNCC	7 cut(s)	35, 57, 58, 298, 354, 665, 684
NmuCI	GTSAC	2 cut(s)	46, 735
NspI	RCATGY	2 cut(s)	267, 707
PaeI	GCATGC	2 cut(s)	267, 707
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 216
PdiI	GCCGGC	1 cut(s)	430
PfeI	GAWTC	3 cut(s)	272, 415, 465
Pfl23II	CGTACG	1 cut(s)	495
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	4 cut(s)	259, 262, 269, 394
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	678
PspEI	GGTNACC	1 cut(s)	735
PspGI	CCWGG	1 cut(s)	678
PspLI	CGTACG	1 cut(s)	495
PspN4I	GGNNCC	7 cut(s)	35, 57, 58, 298, 354, 665, 684
PspOMI	GGGCCC	1 cut(s)	55
PspPI	GGNCC	4 cut(s)	34, 55, 56, 682
PstI	CTGCAG	1 cut(s)	558
PstNI	CAGNNNCTG	1 cut(s)	574
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	4 cut(s)	497, 578, 612, 695
RsaNI	GTAC	4 cut(s)	496, 577, 611, 694
SaqAI	TTAA	2 cut(s)	129, 165
SatI	GCNGC	4 cut(s)	258, 261, 268, 393
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	4 cut(s)	34, 55, 56, 682
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	3 cut(s)	60, 83, 680
SduI	GDGCHC	1 cut(s)	59
SfaNI	GCATC	2 cut(s)	315, 524
SfcI	CTRYAG	2 cut(s)	476, 554
SinI	GGWCC	2 cut(s)	34, 682
SphI	GCATGC	2 cut(s)	267, 707
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	9 cut(s)	11, 44, 139, 243, 261, 300, 393, 707, 725
SspMI	CTAG	1 cut(s)	799
StyD4I	CCNGG	3 cut(s)	58, 81, 678
StyI	CCWWGG	3 cut(s)	619, 667, 744
TaaI	ACNGT	3 cut(s)	495, 675, 722
TaqI	TCGA	1 cut(s)	27
TasI	AATT	1 cut(s)	225
TatI	WGTACW	2 cut(s)	576, 693
TauI	GCSGC	2 cut(s)	263, 395
TfiI	GAWTC	3 cut(s)	272, 415, 465
Tru1I	TTAA	2 cut(s)	129, 165
Tru9I	TTAA	2 cut(s)	129, 165
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	2 cut(s)	46, 735
TseI	GCWGC	2 cut(s)	257, 267
Tsp45I	GTSAC	2 cut(s)	46, 735
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	225, 450
TspRI	CASTG	1 cut(s)	525
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	2 cut(s)	34, 682
XceI	RCATGY	2 cut(s)	267, 707
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.