Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Forward (+)

9664169 .. 9666472

Gene Structure 2304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22849

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTGGAAAGGAGGGTTTTGAGGTGGACCAGCTTGGGGTCATAGAAGGAACGAGCTTCTCTCAGCTGCTCTACGAAGTCGAACATGATGTGGTGGGTCTTTGTGTAGATGATCATCAATCCCAAATCTTCAACTACAACACCAACAGCTGCTCCTCGCTTTATTCGGCCACCGACCTTAAAACCCCCAAAATGCTCTGTTTCGGGGACTTTCAGAACAAGGACAGGGACAACCACCACCTCGGGGAAATTGGGTTTCCGGAGATTTCGATTTCCCGGCCGCCGGCTCAGAAATCAGGGCTCACATGCAGCGATTCCTCCTCTGTTTCTTCCACCAGCACCAAAGCGGCCACTTCTTCCTCCAACTCTAATAGTAATAAGAAGCGAAACGGGGTGGCGCAAGAACAACAAGTTCAATGTGCAAGCACCACAACTCAGGCCGGTCAGAGAAGCTCTAAGAAGCCGAAAACGGACAAGCCCGCTGCCGGAAAGAGGAGAGAGAAGCTGGGAGAAAGAATCTCAGCACTGCAGCAACTCGTTTCACCCTTTGGAAAGACAGACACAGCCTCAGTGCTTCATGAAGCGATGGGATACATCAGGTTCCTGCACGACCAGGTTCAGGTTCTGTGTTCGCCATACCTGAAACGCTTGCCTTCATTACCTGAGGGAGGAGGAGATGGGGCGGAGAAGAAGGACGAAGAAGCGAGGAGTAATGACCTGAGAAGCCGGGGGCTGTGTTTGGTGCCGATGGAGAACACCGCACATTTGGCGAACAACAACGGTGCCGATTTCTGGTCACCGGTTACAATGGCGAGCAACAGTAACAACAAAGTGTCATCGTCGACCGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

30.72

Weight (kDa)

6.66

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	742, 782
AccI	GTMKAC	1 cut(s)	842
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	5 cut(s)	281, 347, 480, 683, 759
AcoI	YGGCCR	3 cut(s)	168, 278, 348
AfiI	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 485, 492, 619, 668, 792
AgeI	ACCGGT	1 cut(s)	799
AgsI	TTSAA	2 cut(s)	133, 416
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	6 cut(s)	34, 57, 67, 150, 453, 505
AluI	AGCT	6 cut(s)	34, 57, 67, 150, 453, 505
AlwNI	CAGNNNCTG	1 cut(s)	625
Ama87I	CYCGRG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	4 cut(s)	168, 278, 348, 438
ApeKI	GCWGC	5 cut(s)	67, 150, 309, 482, 529
AsiGI	ACCGGT	1 cut(s)	799
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	2 cut(s)	277, 728
AsuHPI	GGTGA	2 cut(s)	534, 789
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	28
AxyI	CCTNAGG	1 cut(s)	663
BanI	GGYRCC	2 cut(s)	742, 782
BanII	GRGCYC	1 cut(s)	303
BbvI	GCAGC	5 cut(s)	54, 137, 321, 469, 541
BccI	CCATC	3 cut(s)	580, 671, 742
BciT130I	CCWGG	1 cut(s)	614
BciVI	GTATCC	1 cut(s)	584
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	277, 728
BfmI	CTRYAG	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	584
BisI	GCNGC	7 cut(s)	68, 151, 281, 310, 348, 483, 530
BlsI	GCNGC	7 cut(s)	69, 152, 282, 311, 349, 484, 531
Bme1390I	CCNGG	3 cut(s)	277, 614, 728
Bme18I	GGWCC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	3 cut(s)	602, 744, 784
BmrFI	CCNGG	3 cut(s)	277, 614, 728
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpuMI	CCSGG	2 cut(s)	277, 728
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	241, 727
BsaWI	WCCGGW	3 cut(s)	259, 799, 845
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 485, 492, 619, 668, 792
Bse118I	RCCGGY	3 cut(s)	283, 440, 799
Bse21I	CCTNAGG	1 cut(s)	663
Bse8I	GATNNNNATC	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	2 cut(s)	241, 727
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 485, 492, 619, 668, 792
BseMII	CTCAG	7 cut(s)	77, 302, 449, 534, 582, 654, 710
BseRI	GAGGAG	6 cut(s)	145, 310, 508, 684, 687, 721
BseX3I	CGGCCG	1 cut(s)	278
BseXI	GCAGC	5 cut(s)	54, 137, 321, 469, 541
BseYI	CCCAGC	1 cut(s)	505
BsgI	GTGCAG	1 cut(s)	590
Bsh1285I	CGRYCG	2 cut(s)	281, 846
BshFI	GGCC	4 cut(s)	170, 280, 350, 440
BshNI	GGYRCC	2 cut(s)	742, 782
BshTI	ACCGGT	1 cut(s)	799
BsiEI	CGRYCG	2 cut(s)	281, 846
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	8 cut(s)	260, 277, 284, 441, 486, 727, 800, 846
BslFI	GGGAC	2 cut(s)	221, 242
BslI	CCNNNNNNNGG	8 cut(s)	37, 244, 283, 485, 492, 619, 668, 792
BsmFI	GGGAC	2 cut(s)	221, 242
BsnI	GGCC	4 cut(s)	170, 280, 350, 440
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	5 cut(s)	281, 347, 480, 683, 759
BspANI	GGCC	4 cut(s)	170, 280, 350, 440
BspCNI	CTCAG	7 cut(s)	76, 301, 448, 533, 581, 655, 711
BspEI	TCCGGA	1 cut(s)	259
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	3 cut(s)	602, 744, 784
BspMAI	CTGCAG	1 cut(s)	531
BspT107I	GGYRCC	2 cut(s)	742, 782
BsrFI	RCCGGY	3 cut(s)	283, 440, 799
BssAI	RCCGGY	3 cut(s)	283, 440, 799
BssECI	CCNNGG	2 cut(s)	241, 727
BssMI	GATC	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	782, 821
BstC8I	GCNNGC	5 cut(s)	285, 424, 480, 650, 814
BstDEI	CTNAG	8 cut(s)	63, 288, 435, 456, 520, 568, 663, 719
BstEII	GGTNACC	1 cut(s)	795
BstENI	CCTNNNNNAGG	1 cut(s)	666
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMCI	CGRYCG	2 cut(s)	281, 846
BstMWI	GCNNNNNNNGC	1 cut(s)	767
BstNI	CCWGG	1 cut(s)	614
BstNSI	RCATGY	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	795
BstSCI	CCNGG	3 cut(s)	275, 612, 726
BstSFI	CTRYAG	1 cut(s)	527
BstV1I	GCAGC	5 cut(s)	54, 137, 321, 469, 541
BstZI	CGGCCG	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	663
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	4 cut(s)	170, 280, 350, 440
BtgZI	GCGATG	1 cut(s)	599
BtsI	GCAGTG	1 cut(s)	524
BtsIMutI	CAGTG	2 cut(s)	524, 576
Cac8I	GCNNGC	5 cut(s)	285, 424, 480, 650, 814
CaiI	CAGNNNCTG	1 cut(s)	625
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	1 cut(s)	400
Cfr10I	RCCGGY	3 cut(s)	283, 440, 799
Cfr13I	GGNCC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	612
CspAI	ACCGGT	1 cut(s)	799
CviAII	CATG	3 cut(s)	86, 306, 578
DdeI	CTNAG	8 cut(s)	63, 288, 435, 456, 520, 568, 663, 719
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	3 cut(s)	168, 278, 348
EagI	CGGCCG	1 cut(s)	278
EciI	GGCGGA	1 cut(s)	698
EclXI	CGGCCG	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	28
Eco52I	CGGCCG	1 cut(s)	278
Eco81I	CCTNAGG	1 cut(s)	663
Eco88I	CYCGRG	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	795
EcoNI	CCTNNNNNAGG	1 cut(s)	666
EcoO65I	GGTNACC	1 cut(s)	795
EcoRII	CCWGG	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	3 cut(s)	89, 309, 581
FaiI	YATR	5 cut(s)	44, 87, 307, 579, 637
FaqI	GGGAC	2 cut(s)	221, 242
FatI	CATG	3 cut(s)	85, 305, 577
FauI	CCCGC	1 cut(s)	487
FbaI	TGATCA	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	842
Fnu4HI	GCNGC	7 cut(s)	68, 151, 281, 310, 348, 483, 530
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	7 cut(s)	68, 151, 281, 310, 348, 483, 530
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	7 cut(s)	68, 151, 281, 310, 348, 483, 530
GsaI	CCCAGC	1 cut(s)	509
HaeIII	GGCC	4 cut(s)	170, 280, 350, 440
HapII	CCGG	8 cut(s)	260, 277, 284, 441, 486, 727, 800, 846
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	3 cut(s)	89, 309, 581
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	843
HindII	GTYRAC	1 cut(s)	843
HinfI	GANTC	2 cut(s)	314, 516
HpaII	CCGG	8 cut(s)	260, 277, 284, 441, 486, 727, 800, 846
HphI	GGTGA	2 cut(s)	534, 789
Hpy166II	GTNNAC	2 cut(s)	28, 843
Hpy188I	TCNGA	3 cut(s)	216, 291, 447
Hpy188III	TCNNGA	2 cut(s)	260, 578
Hpy8I	GTNNAC	2 cut(s)	28, 843
Hpy99I	CGWCG	1 cut(s)	844
HpyAV	CCTTC	3 cut(s)	41, 663, 685
HpyCH4III	ACNGT	2 cut(s)	782, 821
HpyCH4V	TGCA	4 cut(s)	309, 422, 529, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	767
HpyF3I	CTNAG	8 cut(s)	63, 288, 435, 456, 520, 568, 663, 719
Hsp92II	CATG	3 cut(s)	89, 309, 581
HspAI	GCGC	1 cut(s)	398
Kpn2I	TCCGGA	1 cut(s)	259
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	5 cut(s)	54, 137, 321, 469, 541
MabI	ACCWGGT	1 cut(s)	612
MaeIII	GTNAC	3 cut(s)	795, 802, 821
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	5 cut(s)	121, 321, 348, 700, 710
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	387
MroI	TCCGGA	1 cut(s)	259
MroNI	GCCGGC	1 cut(s)	283
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	3 cut(s)	67, 150, 482
MspI	CCGG	8 cut(s)	260, 277, 284, 441, 486, 727, 800, 846
MspR9I	CCNGG	3 cut(s)	277, 614, 728
MvaI	CCWGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	1 cut(s)	767
NaeI	GCCGGC	1 cut(s)	285
NciI	CCSGG	2 cut(s)	277, 728
NdeII	GATC	1 cut(s)	112
NgoMIV	GCCGGC	1 cut(s)	283
NlaIII	CATG	3 cut(s)	89, 309, 581
NlaIV	GGNNCC	3 cut(s)	602, 744, 784
NmuCI	GTSAC	1 cut(s)	795
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	1 cut(s)	577
PdiI	GCCGGC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	314, 516
PinAI	ACCGGT	1 cut(s)	799
PkrI	GCNGC	7 cut(s)	69, 152, 282, 311, 349, 484, 531
Psp6I	CCWGG	1 cut(s)	612
PspEI	GGTNACC	1 cut(s)	795
PspFI	CCCAGC	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	3 cut(s)	602, 744, 784
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	531
PstNI	CAGNNNCTG	1 cut(s)	625
PvuII	CAGCTG	2 cut(s)	67, 150
SalI	GTCGAC	1 cut(s)	841
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	7 cut(s)	68, 151, 281, 310, 348, 483, 530
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	3 cut(s)	277, 614, 728
SduI	GDGCHC	1 cut(s)	303
SexAI	ACCWGGT	1 cut(s)	612
SfcI	CTRYAG	1 cut(s)	527
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	5 cut(s)	281, 347, 480, 683, 759
StyD4I	CCNGG	3 cut(s)	275, 612, 726
TaaI	ACNGT	2 cut(s)	782, 821
TaqI	TCGA	3 cut(s)	81, 269, 842
TasI	AATT	1 cut(s)	249
TauI	GCSGC	2 cut(s)	283, 350
TfiI	GAWTC	2 cut(s)	314, 516
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	531, 576
TseFI	GTSAC	1 cut(s)	795
TseI	GCWGC	5 cut(s)	67, 150, 309, 482, 529
Tsp45I	GTSAC	1 cut(s)	795
TspDTI	ATGAA	3 cut(s)	566, 594, 645
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	2 cut(s)	531, 576
VpaK11BI	GGWCC	1 cut(s)	28
XagI	CCTNNNNNAGG	1 cut(s)	666
XceI	RCATGY	1 cut(s)	309
XmiI	GTMKAC	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.