Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Reverse (-)

19322865 .. 19324207

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1091400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGGAAAGTGGTGGGTTCGAGGGGGACCATTTGGCGGTGACAGAGGGGACTAGCTTCTCTCAGCTACTCTTCGCGGCCGACGAAGTCGTTAACCTTGCCGTGAACTCCGACCAGACCTTTAACTACACCTGCTCATCTACTTATCCTACCGAGATTAAGCTACCCAAAATGCTCTGCTTCGGAAACTACGACCACCAAACCGACGTTAACGGTGTCGAAAGTGGGTTTTCAGAAACCGCCAAGAAATCAGCCGTCACATGCAGCGGCTCCTCCTCCGTTTCTTCCACAAGCACCGCCAGCATCAGTGCATTGCCCAAGTCCAACAATAAAAGGCGAAATGGGTTGGCTCCGATCAGCAACACAACTACTCCGACAACCCAGAGAGCCACTAAAAAGACGAAATCGGAGAATCGCACGTCGGCCGGCAACGGAAAGAGGAAAGAGAAGCTCGGAGAACGAATCACAGCGTTGCAGCAGCTCGTTTCACCCTACGGCAAGACGGACACGGCATCGGTGCTTCACGAAGCGATGGGATACATCAGATTTCTGCAAAAACAGGTTCAGGTGCTGTGCTCGCCTTACCTTCAACGCCTAGAGCCTCCTTCATTACCTGTACATGTAAGTACCAAAAAAACACTCTCACTGTCAGAATTTTTACTTCTACTTGTTTTCCACGTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

24.67

Weight (kDa)

9.0

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccII	CGCG	1 cut(s)	77
AciI	CCGC	6 cut(s)	5, 38, 77, 240, 267, 297
AcoI	YGGCCR	2 cut(s)	78, 423
AcsI	RAATTY	1 cut(s)	653
AfaI	GTAC	2 cut(s)	618, 628
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	1 cut(s)	590
AjiI	CACGTC	2 cut(s)	420, 679
AluBI	AGCT	5 cut(s)	57, 67, 163, 451, 481
AluI	AGCT	5 cut(s)	57, 67, 163, 451, 481
Alw21I	GWGCWC	1 cut(s)	578
AlwNI	CAGNNNCTG	1 cut(s)	571
AoxI	GGCC	2 cut(s)	78, 423
ApeKI	GCWGC	3 cut(s)	264, 475, 478
ApoI	RAATTY	1 cut(s)	653
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	52, 480
AvaII	GGWCC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	578
BbvI	GCAGC	3 cut(s)	276, 487, 490
BccI	CCATC	1 cut(s)	526
BceAI	ACGGC	4 cut(s)	86, 239, 511, 525
BciVI	GTATCC	1 cut(s)	530
BfaI	CTAG	3 cut(s)	54, 596, 685
BfuAI	ACCTGC	1 cut(s)	140
BfuI	GTATCC	1 cut(s)	530
BisI	GCNGC	5 cut(s)	78, 265, 268, 476, 479
BlsI	GCNGC	5 cut(s)	79, 266, 269, 477, 480
Bme18I	GGWCC	1 cut(s)	28
BmgBI	CACGTC	2 cut(s)	420, 679
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	3 cut(s)	29, 271, 351
BmsI	GCATC	2 cut(s)	312, 521
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	262, 265
BseX3I	CGGCCG	2 cut(s)	78, 423
BseXI	GCAGC	3 cut(s)	276, 487, 490
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	2 cut(s)	81, 426
BshFI	GGCC	2 cut(s)	80, 425
BsiEI	CGRYCG	2 cut(s)	81, 426
BsiHKAI	GWGCWC	1 cut(s)	578
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	2 cut(s)	41, 64
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmFI	GGGAC	2 cut(s)	41, 64
BsnI	GGCC	2 cut(s)	80, 425
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp1407I	TGTACA	1 cut(s)	616
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	6 cut(s)	5, 38, 77, 240, 267, 297
BspANI	GGCC	2 cut(s)	80, 425
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	3 cut(s)	29, 271, 351
BspMI	ACCTGC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	425
BsrGI	TGTACA	1 cut(s)	616
BssAI	RCCGGY	1 cut(s)	425
BssMI	GATC	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	215, 648
Bst6I	CTCTTC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	616
BstC8I	GCNNGC	3 cut(s)	301, 427, 578
BstDEI	CTNAG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMCI	CGRYCG	2 cut(s)	81, 426
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 577
BstNSI	RCATGY	2 cut(s)	264, 623
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	276, 487, 490
BstZI	CGGCCG	2 cut(s)	78, 423
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	80, 425
BtgZI	GCGATG	1 cut(s)	545
BtrI	CACGTC	2 cut(s)	420, 679
BtsIMutI	CAGTG	2 cut(s)	313, 644
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	301, 427, 578
CaiI	CAGNNNCTG	1 cut(s)	571
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	617, 627
CviAII	CATG	2 cut(s)	261, 620
CviQI	GTAC	2 cut(s)	617, 627
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EaeI	YGGCCR	2 cut(s)	78, 423
EagI	CGGCCG	2 cut(s)	78, 423
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	2 cut(s)	78, 423
Eco47I	GGWCC	1 cut(s)	28
Eco52I	CGGCCG	2 cut(s)	78, 423
FaeI	CATG	2 cut(s)	264, 623
FaiI	YATR	2 cut(s)	262, 621
FaqI	GGGAC	2 cut(s)	41, 64
FatI	CATG	2 cut(s)	260, 619
Fnu4HI	GCNGC	5 cut(s)	78, 265, 268, 476, 479
Fsp4HI	GCNGC	5 cut(s)	78, 265, 268, 476, 479
FspBI	CTAG	3 cut(s)	54, 596, 685
GluI	GCNGC	5 cut(s)	78, 265, 268, 476, 479
HaeIII	GGCC	2 cut(s)	80, 425
HapII	CCGG	1 cut(s)	426
Hin1II	CATG	2 cut(s)	264, 623
HincII	GTYRAC	2 cut(s)	94, 211
HindII	GTYRAC	2 cut(s)	94, 211
HinfI	GANTC	2 cut(s)	412, 462
HpaI	GTTAAC	2 cut(s)	94, 211
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	2 cut(s)	52, 480
Hpy166II	GTNNAC	3 cut(s)	94, 106, 211
Hpy188I	TCNGA	9 cut(s)	112, 185, 235, 354, 375, 409, 455, 545, 652
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	3 cut(s)	94, 106, 211
Hpy99I	CGWCG	3 cut(s)	86, 209, 424
HpyAV	CCTTC	2 cut(s)	596, 615
HpyCH4III	ACNGT	2 cut(s)	215, 648
HpyCH4IV	ACGT	3 cut(s)	207, 419, 678
HpyCH4V	TGCA	4 cut(s)	264, 311, 475, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 577
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	3 cut(s)	207, 419, 678
Hsp92II	CATG	2 cut(s)	264, 623
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
KspAI	GTTAAC	2 cut(s)	94, 211
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	275, 355
LpnPI	CCDG	8 cut(s)	128, 145, 313, 395, 439, 545, 551, 627
Lsp1109I	GCAGC	3 cut(s)	276, 487, 490
LweI	GCATC	2 cut(s)	312, 521
MaeI	CTAG	3 cut(s)	54, 596, 685
MaeII	ACGT	3 cut(s)	207, 419, 678
MaeIII	GTNAC	2 cut(s)	40, 256
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	2 cut(s)	64, 276
MhlI	GDGCHC	1 cut(s)	578
MluCI	AATT	1 cut(s)	653
MmeI	TCCRAC	3 cut(s)	135, 348, 398
MnlI	CCTC	6 cut(s)	16, 40, 283, 286, 432, 612
MroNI	GCCGGC	1 cut(s)	425
MseI	TTAA	4 cut(s)	93, 123, 159, 210
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	1 cut(s)	426
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	300, 577
NaeI	GCCGGC	1 cut(s)	427
NdeII	GATC	1 cut(s)	354
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	2 cut(s)	264, 623
NlaIV	GGNNCC	3 cut(s)	29, 271, 351
NmuCI	GTSAC	2 cut(s)	40, 256
NspI	RCATGY	2 cut(s)	264, 623
PaqCI	CACCTGC	1 cut(s)	140
PciI	ACATGT	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 189
PdiI	GCCGGC	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	412, 462
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	5 cut(s)	79, 266, 269, 477, 480
PscI	ACATGT	1 cut(s)	619
PspN4I	GGNNCC	3 cut(s)	29, 271, 351
PspPI	GGNCC	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	571
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	2 cut(s)	618, 628
RsaNI	GTAC	2 cut(s)	617, 627
SaqAI	TTAA	4 cut(s)	93, 123, 159, 210
SatI	GCNGC	5 cut(s)	78, 265, 268, 476, 479
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	578
SfaNI	GCATC	2 cut(s)	312, 521
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	1 cut(s)	653
SsiI	CCGC	6 cut(s)	5, 38, 77, 240, 267, 297
SspMI	CTAG	3 cut(s)	54, 596, 685
TaaI	ACNGT	2 cut(s)	215, 648
TaiI	ACGT	3 cut(s)	210, 422, 681
TaqI	TCGA	2 cut(s)	21, 219
TasI	AATT	1 cut(s)	653
TatI	WGTACW	1 cut(s)	616
TauI	GCSGC	2 cut(s)	80, 270
TfiI	GAWTC	2 cut(s)	412, 462
Tru1I	TTAA	4 cut(s)	93, 123, 159, 210
Tru9I	TTAA	4 cut(s)	93, 123, 159, 210
TscAI	CASTG	2 cut(s)	313, 651
TseFI	GTSAC	2 cut(s)	40, 256
TseI	GCWGC	3 cut(s)	264, 475, 478
Tsp45I	GTSAC	2 cut(s)	40, 256
TspDTI	ATGAA	1 cut(s)	597
TspGWI	ACGGA	3 cut(s)	268, 447, 518
TspRI	CASTG	2 cut(s)	313, 651
Tth111I	GACNNNGTC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	1 cut(s)	653
XceI	RCATGY	2 cut(s)	264, 623
XspI	CTAG	3 cut(s)	54, 596, 685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.