Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008835

Physical Location & Seq

Genomic Coordinates Forward (+)

74217393 .. 74217818

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0554500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCTTCTCCGTGGAATTGCTCCTAATCACTATACTCTAAACACTATCATCAATTGCTTTTGCCATTTGAATCAAATGGGGTTTGGCTTCTCTGTCCTGGGCAAATTCTTCAAATTGGGTCTTCAACCAGATGTTATTACCTTCTCCACTCTGATCCACGGCTTTGTTCTCCACAATCAAGTGCCTGAGGCGGCACGATTTTTCACCAAAATGCTGCAGGCAGGTCATTGTAAGCCCAATGTGTTTACTTTCTCCACACTAATTAAGGGCTTTTGCAAGATGAGAAACAACAGTGCTGCAATTCAATTACTTAGGAAGTTGGAAGAAAGAGGATGCCAGCCTGACATTGTTTCCTATAGCACCATCATCGACAGTCTTTGCAAGGATACACTAATTGATGAAGCATTGACCCTCTTCTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.88

Weight (kDa)

8.58

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	8 - 55	2.8e-09	PPR repeat family
PPR_3	PF13812	35 - 92	6.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	40 - 71	6e-08	PPR repeat
PPR_2	PF13041	43 - 93	1.5e-14	PPR repeat family
PPR_1	PF12854	77 - 107	2.4e-10	PPR repeat
PPR_3	PF13812	78 - 124	9.4e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	79 - 128	8.4e-16	PPR repeat family
PPR_1	PF12854	110 - 141	2.6e-11	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900 FvH4_2g04900
malus_domestica	MD05G1091400.v1.1 MD10G1098900.v1.1
prunus_persica	Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1 Prupe.8G136800_v2.0.a1
pyrus_communis	pycom05g09070 pycom10g08500
rosa_chinensis	RchiOBHm_Chr6g0254731
rosa_laevigata	RLG00000014894
rosa_multiflora	Rmu_sc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210570
rosa_rugosa	Rorug05G0554400 Rorug05G0554500
rosa_samantha	Rh6AG071500 Rh6BG063700 Rh6CG063100 Rh6DG060200
rosa_wichuraiana	Rw6G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	104
AgsI	TTSAA	4 cut(s)	70, 112, 125, 305
AjnI	CCWGG	1 cut(s)	96
AlwI	GGATC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	214, 296
ApoI	RAATTY	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	201, 283
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciT130I	CCWGG	1 cut(s)	98
BciVI	GTATCC	1 cut(s)	379
BfmI	CTRYAG	2 cut(s)	215, 355
BfuAI	ACCTGC	1 cut(s)	212
BfuI	GTATCC	1 cut(s)	379
BisI	GCNGC	3 cut(s)	192, 215, 297
BlsI	GCNGC	3 cut(s)	193, 216, 298
Bme1390I	CCNGG	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	10, 97, 157
Bse21I	CCTNAGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	3 cut(s)	10, 97, 157
BseGI	GGATG	1 cut(s)	338
BseMII	CTCAG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	201, 283
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	219
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	148
BssECI	CCNNGG	3 cut(s)	10, 97, 157
BssMI	GATC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	293, 374
Bst6I	CTCTTC	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	219, 338
BstDEI	CTNAG	3 cut(s)	186, 311, 418
BstDSI	CCRYGG	2 cut(s)	10, 157
BstF5I	GGATG	1 cut(s)	338
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	2 cut(s)	215, 355
BstV1I	GCAGC	2 cut(s)	201, 283
BstV2I	GAAGAC	1 cut(s)	113
Bsu36I	CCTNAGG	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	379
BtgI	CCRYGG	2 cut(s)	10, 157
BtsCI	GGATG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	298
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	2 cut(s)	219, 338
CviJI	RGCY	5 cut(s)	87, 162, 235, 270, 340
CviKI_1	RGCY	5 cut(s)	87, 162, 235, 270, 340
DdeI	CTNAG	3 cut(s)	186, 311, 418
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco81I	CCTNAGG	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	96
FaiI	YATR	2 cut(s)	33, 357
Fnu4HI	GCNGC	3 cut(s)	192, 215, 297
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	3 cut(s)	192, 215, 297
GluI	GCNGC	3 cut(s)	192, 215, 297
HinfI	GANTC	1 cut(s)	70
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	2 cut(s)	153, 421
Hpy8I	GTNNAC	1 cut(s)	246
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	293, 374
HpyCH4V	TGCA	4 cut(s)	217, 276, 299, 381
HpyF3I	CTNAG	3 cut(s)	186, 311, 418
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	8 cut(s)	83, 110, 141, 198, 203, 207, 350, 354
Lsp1109I	GCAGC	2 cut(s)	201, 283
LweI	GCATC	1 cut(s)	323
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	4 cut(s)	100, 113, 335, 406
MfeI	CAATTG	1 cut(s)	52
MluCI	AATT	8 cut(s)	15, 52, 104, 113, 261, 300, 305, 393
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	3 cut(s)	181, 323, 422
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	193, 216, 298
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	3 cut(s)	192, 215, 297
Sau3AI	GATC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	2 cut(s)	143, 226
SfaNI	GCATC	1 cut(s)	323
SfcI	CTRYAG	2 cut(s)	215, 355
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	8 cut(s)	15, 52, 104, 113, 261, 300, 305, 393
SsiI	CCGC	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	293, 374
TaqI	TCGA	1 cut(s)	369
TasI	AATT	8 cut(s)	15, 52, 104, 113, 261, 300, 305, 393
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	2 cut(s)	214, 296
TspDTI	ATGAA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	298
XapI	RAATTY	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.