Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009306

Physical Location & Seq

Genomic Coordinates Forward (+)

4620638 .. 4621243

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05661.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGACACCCAGCTTGAGCTGGTTTTCCCCTACTTGTGCTTCCCCAAGCTCCCACAAGAGCCCTGCCTCTTCGTTGGAGCCGCCTCCCCGGAGCTCCGGTACACGCCGTCTCCGGTACACGCCGTCTGCAACTCCGACACCCGCACCTGCAACTCTGTCTCCCGCCAATTCCGCACAGTTGAGAGGGCCACGCACGCCTCCCTCACGCTCTGCCGCAACGCCCGCGACCTCCACCTGATCCCGACCTGCTTCTCCTCCGTCTCCGACCTCGACCTCTCCCTTCTCTCCCCCTGGGGCCACGCGCTGCTCTCCCCCTCCGACTCCTCCACCGACCCCACCCTCCTCGCCCATTGCCTGCGCCTCGCCTTCCCCGTCGTCACTTCCCTCACCGTCTACTCCCGATCCTCCACCGTCGAGATTGTCTCCAGTCTTTGGCCGCGTTTGCGCCGCGTCACGCTCTCCTCCGGTTGTCGACGAGGTGGTGAGGAGGAGGTGGAGGCTCGGCGGCGACGATCGCCGGGGGAGGAGGAGGGGCTACCGCCGGGGCCCTTGCTGATGGTAGGGTGGATAAACAGGGGCGGTAATGGGGAGAGAGAGAGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006810 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009653 GO:0009914 GO:0009926 GO:0009934 GO:0009987 GO:0010016 GO:0010029 GO:0010035 GO:0010187 GO:0010817 GO:0016567 GO:0019005 GO:0019538 GO:0022603 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042221 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048367 GO:0048509 GO:0048518 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0060918 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080134 GO:1900140 GO:1901564 GO:1901700 GO:1902494 GO:1902584 GO:1990234 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.19

Weight (kDa)

7.6

Isoelectric Point (pI)

65.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42620
fragaria_vesca	FvH4_2g05661 FvH4_2g12921 FvH4_4g05521 FvH4_6g27480
malus_domestica	MD09G1236800.v1.1 MD17G1266700.v1.1
prunus_persica	Prupe.3G117700_v2.0.a1
pyrus_communis	pycom09g15540
rosa_chinensis	RchiOBHm_Chr2g0128401 RchiOBHm_Chr2g0128411 RchiOBHm_Chr2g0129761
rosa_laevigata	RLG00000019101
rosa_multiflora	Rmu_ssc0000459.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114320
rosa_rugosa	Rorug02G0289700
rosa_samantha	Rh2AG340400 Rh2BG348700 Rh2BG348900 Rh2CG327800 Rh2DG367200
rosa_wichuraiana	Rw2G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	155
Acc36I	ACCTGC	2 cut(s)	155, 254
AccB7I	CCANNNNNTGG	1 cut(s)	432
AccI	GTMKAC	2 cut(s)	393, 472
AccII	CGCG	4 cut(s)	225, 302, 439, 450
AclWI	GGATC	2 cut(s)	232, 396
AcoI	YGGCCR	1 cut(s)	434
AfaI	GTAC	2 cut(s)	101, 117
AfiI	CCNNNNNNNGG	1 cut(s)	432
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	4 cut(s)	13, 19, 49, 94
AluI	AGCT	4 cut(s)	13, 19, 49, 94
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	4 cut(s)	114, 163, 265, 427
AlwI	GGATC	2 cut(s)	232, 396
AoxI	GGCC	4 cut(s)	186, 295, 434, 545
ApaI	GGGCCC	1 cut(s)	549
ApeKI	GCWGC	1 cut(s)	304
AspLEI	GCGC	3 cut(s)	304, 360, 447
AspS9I	GGNCC	4 cut(s)	186, 295, 545, 546
AsuC2I	CCSGG	3 cut(s)	89, 519, 543
AsuHPI	GGTGA	2 cut(s)	379, 494
BaeGI	GKGCMC	1 cut(s)	549
BanII	GRGCYC	3 cut(s)	63, 96, 549
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	1 cut(s)	550
BceAI	ACGGC	2 cut(s)	91, 107
BciT130I	CCWGG	1 cut(s)	292
BcnI	CCSGG	3 cut(s)	89, 519, 543
BcoDI	GTCTC	4 cut(s)	114, 163, 265, 427
BfuAI	ACCTGC	2 cut(s)	155, 254
BisI	GCNGC	6 cut(s)	81, 214, 305, 437, 448, 506
BlsI	GCNGC	6 cut(s)	82, 215, 306, 438, 449, 507
Bme1390I	CCNGG	4 cut(s)	89, 292, 519, 543
BmgT120I	GGNCC	4 cut(s)	186, 295, 545, 546
BmiI	GGNNCC	4 cut(s)	79, 296, 546, 547
BmrFI	CCNGG	4 cut(s)	89, 292, 519, 543
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	3 cut(s)	89, 519, 543
BsaJI	CCNNGG	5 cut(s)	87, 290, 291, 518, 542
BsaWI	WCCGGW	3 cut(s)	96, 112, 464
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 94, 113, 124, 143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	5 cut(s)	87, 290, 291, 518, 542
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMI	GCAATG	1 cut(s)	349
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	8 cut(s)	244, 313, 332, 451, 500, 503, 539, 542
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	1 cut(s)	291
BseYI	CCCAGC	1 cut(s)	9
Bsh1236I	CGCG	4 cut(s)	225, 302, 439, 450
Bsh1285I	CGRYCG	1 cut(s)	515
BshFI	GGCC	4 cut(s)	188, 297, 436, 547
BsiEI	CGRYCG	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	6 cut(s)	89, 97, 113, 465, 518, 542
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmAI	GTCTC	4 cut(s)	114, 163, 265, 427
BsmBI	CGTCTC	2 cut(s)	114, 265
BsnI	GGCC	4 cut(s)	188, 297, 436, 547
Bsp120I	GGGCCC	1 cut(s)	545
Bsp1286I	GDGCHC	3 cut(s)	63, 96, 549
Bsp143I	GATC	3 cut(s)	237, 401, 512
BspANI	GGCC	4 cut(s)	188, 297, 436, 547
BspFNI	CGCG	4 cut(s)	225, 302, 439, 450
BspLI	GGNNCC	4 cut(s)	79, 296, 546, 547
BspMI	ACCTGC	2 cut(s)	155, 254
BspPI	GGATC	2 cut(s)	232, 396
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	5 cut(s)	87, 290, 291, 518, 542
BssMI	GATC	3 cut(s)	237, 401, 512
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	3 cut(s)	178, 391, 412
Bst6I	CTCTTC	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	195, 223, 356
BstFNI	CGCG	4 cut(s)	225, 302, 439, 450
BstHHI	GCGC	3 cut(s)	304, 360, 447
BstKTI	GATC	3 cut(s)	240, 404, 515
BstMAI	GTCTC	4 cut(s)	114, 163, 265, 427
BstMBI	GATC	3 cut(s)	237, 401, 512
BstMCI	CGRYCG	1 cut(s)	515
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 194, 222, 442, 514
BstNI	CCWGG	1 cut(s)	292
BstSCI	CCNGG	4 cut(s)	87, 290, 517, 541
BstSLI	GKGCMC	1 cut(s)	549
BstUI	CGCG	4 cut(s)	225, 302, 439, 450
BstV1I	GCAGC	1 cut(s)	291
BsuRI	GGCC	4 cut(s)	188, 297, 436, 547
BveI	ACCTGC	2 cut(s)	155, 254
Cac8I	GCNNGC	3 cut(s)	195, 223, 356
CfoI	GCGC	3 cut(s)	304, 360, 447
Cfr13I	GGNCC	4 cut(s)	186, 295, 545, 546
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	100, 116
CviQI	GTAC	2 cut(s)	100, 116
DpnI	GATC	3 cut(s)	239, 403, 514
DpnII	GATC	3 cut(s)	237, 401, 512
EaeI	YGGCCR	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	3 cut(s)	63, 96, 549
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	2 cut(s)	545, 546
EcoRII	CCWGG	1 cut(s)	290
EcoT38I	GRGCYC	3 cut(s)	63, 96, 549
Esp3I	CGTCTC	2 cut(s)	114, 265
FauI	CCCGC	3 cut(s)	149, 170, 230
FblI	GTMKAC	2 cut(s)	393, 472
Fnu4HI	GCNGC	6 cut(s)	81, 214, 305, 437, 448, 506
FriOI	GRGCYC	3 cut(s)	63, 96, 549
Fsp4HI	GCNGC	6 cut(s)	81, 214, 305, 437, 448, 506
GlaI	GCGC	3 cut(s)	303, 359, 446
GluI	GCNGC	6 cut(s)	81, 214, 305, 437, 448, 506
GsaI	CCCAGC	1 cut(s)	13
GsuI	CTGGAG	1 cut(s)	409
HaeIII	GGCC	4 cut(s)	188, 297, 436, 547
HapII	CCGG	6 cut(s)	89, 97, 113, 465, 518, 542
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	3 cut(s)	304, 360, 447
Hin6I	GCGC	3 cut(s)	302, 358, 445
HinP1I	GCGC	3 cut(s)	302, 358, 445
HincII	GTYRAC	1 cut(s)	473
HindII	GTYRAC	1 cut(s)	473
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	6 cut(s)	89, 97, 113, 465, 518, 542
HphI	GGTGA	2 cut(s)	379, 494
Hpy166II	GTNNAC	4 cut(s)	102, 118, 394, 473
Hpy188I	TCNGA	3 cut(s)	136, 265, 319
Hpy188III	TCNNGA	3 cut(s)	241, 399, 415
Hpy8I	GTNNAC	4 cut(s)	102, 118, 394, 473
Hpy99I	CGWCG	4 cut(s)	377, 416, 477, 513
HpyAV	CCTTC	2 cut(s)	290, 376
HpyCH4III	ACNGT	3 cut(s)	178, 391, 412
HpyCH4V	TGCA	2 cut(s)	129, 150
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 194, 222, 442, 514
HspAI	GCGC	3 cut(s)	302, 358, 445
Kzo9I	GATC	3 cut(s)	237, 401, 512
LmnI	GCTCC	4 cut(s)	54, 77, 91, 99
Lsp1109I	GCAGC	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	376, 451
MalI	GATC	3 cut(s)	239, 403, 514
MboI	GATC	3 cut(s)	237, 401, 512
MboII	GAAGA	1 cut(s)	61
MhlI	GDGCHC	3 cut(s)	63, 96, 549
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	4 cut(s)	55, 159, 288, 342
MspI	CCGG	6 cut(s)	89, 97, 113, 465, 518, 542
MspR9I	CCNGG	4 cut(s)	89, 292, 519, 543
MvaI	CCWGG	1 cut(s)	292
MvnI	CGCG	4 cut(s)	225, 302, 439, 450
MwoI	GCNNNNNNNGC	5 cut(s)	171, 194, 222, 442, 514
NciI	CCSGG	3 cut(s)	89, 519, 543
NdeII	GATC	3 cut(s)	237, 401, 512
NlaIV	GGNNCC	4 cut(s)	79, 296, 546, 547
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	2 cut(s)	376, 451
PaqCI	CACCTGC	1 cut(s)	155
PasI	CCCWGGG	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	2 cut(s)	369, 508
PflMI	CCANNNNNTGG	1 cut(s)	432
PkrI	GCNGC	6 cut(s)	82, 215, 306, 438, 449, 507
Ple19I	CGATCG	1 cut(s)	515
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	290
PspFI	CCCAGC	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	4 cut(s)	79, 296, 546, 547
PspOMI	GGGCCC	1 cut(s)	545
PspPI	GGNCC	4 cut(s)	186, 295, 545, 546
PvuI	CGATCG	1 cut(s)	515
RsaI	GTAC	2 cut(s)	101, 117
RsaNI	GTAC	2 cut(s)	100, 116
SacI	GAGCTC	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	471
SatI	GCNGC	6 cut(s)	81, 214, 305, 437, 448, 506
Sau3AI	GATC	3 cut(s)	237, 401, 512
Sau96I	GGNCC	4 cut(s)	186, 295, 545, 546
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	4 cut(s)	89, 292, 519, 543
SduI	GDGCHC	3 cut(s)	63, 96, 549
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	4 cut(s)	87, 290, 517, 541
TaaI	ACNGT	3 cut(s)	178, 391, 412
TaqI	TCGA	3 cut(s)	270, 414, 472
TasI	AATT	1 cut(s)	167
TauI	GCSGC	5 cut(s)	83, 216, 439, 450, 508
TseFI	GTSAC	2 cut(s)	376, 451
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	2 cut(s)	376, 451
TspGWI	ACGGA	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	432
XmiI	GTMKAC	2 cut(s)	393, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.