RchiOBHm_Chr2g0128401

F-box LRR-repeat MAX2 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
43452645 .. 43454376
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50017

Sequence Viewer

Length: 1203 bp
ATGCAATCGCGTTCACGTGGCTCTCCATGCCACACGACAAATCACACCCCCCCAATTACTACTCTCCTTTCATTTCTGGATTCCTCTCTTATCAATCTCAAAACCAGCATGAGCGCCGCCGCCGCCGCTCCGATCACTGACCTGCCGGAGGCGATTCTCGCCACCATCATCGGCCTGGTCTCCGACACCCGCTCCCGCAACTCGGTCGCCCTCGTCTGCCGCAAATTCCGCAGCCTCGAGAGAGCCACGCGCACCTCTCTCAAGCTCCGCGGCAACGCGCGCGACCTCCACCTGATCCCGACCTGCTTCACCTCCGTCTCCGACCTCGACCTCTCCCTCCTCTCGCCGTGGGGACACGCGCTGCTCTCCCCCTCCGCCTCCTCCACCGACCCCGCCCTCCTCGCCCAACGGCTCCGCGTCGCCTTCCCCTCCGTCACCTCCCTCACCGTCTACTCCCGATCCTCCTCCACCGTCCAGATTGTCGCCAATCTCTGGCCGGGACTCCGCCGCGTCAAGCTCGTCCGGTGGCATCTACGGCCGCAGTCGCCTCTCGGAGCCGACTTCGAGCCTCTCTTCCAGCAATGCCAGACTCTGTCCGATTTGGACTTGTCGGAATTCTACTACTGGACCGAGGACCTCCCTCCGGTTCTGGAAGCCCATCCCAACGTGGCCCGCTCTCTCACCAAGCTCAATCTCCTGACGGCGTCGATTACCGAGGGTTTCAAAGCCATCGAGATCCGATCCATCACCGAGGCCTGCCCCAAGCTTCAGCAGCTCTTCGTCGCTTGTATTTTTGATCCCAGATACATAGGGATCGTCGGGGAGGAGGCTCTCTTGGCCATATCGACCAATTGTCCGGAGCTCAGAGTCGTCCATCTCATCGATACGTCGTCCTTGGCCAACGCGCGTGGGGATCCAAACGACGACGGCTTCACATCGGAGGACGCTCAGATTGGGCGGGCGGCTTTGATCGACTTCTTCTCCGGGCTTCCTTTGCTGGAAGAGCTGGTGCTAGATGTGTGCAAGAACGTGAGGGACAGTGGATTGGCCTTGGAGGTTCTTGCTTCCAAGTGTCCCAGACTGAGAGCTCTCAAGCTTGGCCAGTTCCATGGGCTGTGCTCGGCGGTTGGGTCCCCAGCTCGACGGCATTGCTCTGTGTCATGGGCTGGAGTCACTGTCGATCAAGAAACTCTGCGGATTTGA

Protein Analysis

400

Amino Acids

43.62

Weight (kDa)

7.58

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 47 - 85 2.6e-07 F-box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 150, 311
AccB7I CCANNNNNTGG 1 cut(s) 492
AccBSI CCGCTC 3 cut(s) 128, 192, 675
AccI GTMKAC 1 cut(s) 450
AccIII TCCGGA 1 cut(s) 856
AclWI GGATC 8 cut(s) 289, 453, 730, 735, 791, 821, 908, 921
AcoI YGGCCR 5 cut(s) 494, 536, 837, 897, 1099
AcsI RAATTY 2 cut(s) 224, 614
AcuI CTGAAG 1 cut(s) 752
AcvI CACGTG 1 cut(s) 17
AcyI GRCGYC 1 cut(s) 704
AfiI CCNNNNNNNGG 4 cut(s) 148, 202, 492, 643
AgsI TTSAA 1 cut(s) 724
AhdI GACNNNNNGTC 1 cut(s) 852
AjnI CCWGG 1 cut(s) 174
Alw21I GWGCWC 3 cut(s) 864, 1090, 1121
Alw26I GTCTC 2 cut(s) 184, 322
AlwI GGATC 8 cut(s) 289, 453, 730, 735, 791, 821, 908, 921
AlwNI CAGNNNCTG 1 cut(s) 592
Ama87I CYCGRG 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 856
AoxI GGCC 9 cut(s) 172, 494, 536, 669, 753, 837, 897, 1047, 1099
ApeKI GCWGC 3 cut(s) 231, 361, 772
ApoI RAATTY 2 cut(s) 224, 614
AspLEI GCGC 6 cut(s) 116, 252, 280, 282, 361, 907
AspS9I GGNCC 4 cut(s) 627, 634, 670, 1131
AsuC2I CCSGG 2 cut(s) 498, 985
AsuHPI GGTGA 5 cut(s) 301, 427, 436, 673, 739
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 3 cut(s) 627, 634, 1131
BalI TGGCCA 3 cut(s) 839, 899, 1101
BamHI GGATCC 1 cut(s) 913
BanII GRGCYC 2 cut(s) 864, 1090
BbrPI CACGTG 1 cut(s) 17
Bbv12I GWGCWC 3 cut(s) 864, 1090, 1121
BbvI GCAGC 3 cut(s) 243, 348, 784
BccI CCATC 5 cut(s) 173, 666, 737, 752, 882
BceAI ACGGC 6 cut(s) 331, 425, 551, 717, 943, 1160
BcgI CGANNNNNNTGC 4 cut(s) 187, 221, 1131, 1165
BciT130I CCWGG 1 cut(s) 176
BcnI CCSGG 2 cut(s) 498, 985
BcoDI GTCTC 2 cut(s) 184, 322
BfaI CTAG 1 cut(s) 1013
BfoI RGCGCY 1 cut(s) 117
BfuAI ACCTGC 2 cut(s) 150, 311
Bme1390I CCNGG 3 cut(s) 176, 498, 985
Bme18I GGWCC 3 cut(s) 627, 634, 1131
BmeRI GACNNNNNGTC 1 cut(s) 852
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 4 cut(s) 627, 634, 670, 1131
BmiI GGNNCC 5 cut(s) 413, 556, 915, 1132, 1133
BmrFI CCNGG 3 cut(s) 176, 498, 985
BmsI GCATC 1 cut(s) 538
BpmI CTGGAG 1 cut(s) 1188
BpuEI CTTGAG 2 cut(s) 245, 1076
BpuMI CCSGG 2 cut(s) 498, 985
Bsa29I ATCGAT 1 cut(s) 882
BsaAI YACGTR 1 cut(s) 17
BsaHI GRCGYC 1 cut(s) 704
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 8 cut(s) 268, 347, 630, 714, 750, 894, 1050, 1108
BsaWI WCCGGW 3 cut(s) 522, 643, 856
BsaXI ACNNNNNCTCC 6 cut(s) 176, 206, 965, 995, 1161, 1191
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 202, 492, 643
Bse1I ACTGG 2 cut(s) 629, 1102
Bse3DI GCAATG 2 cut(s) 587, 1147
BseAI TCCGGA 1 cut(s) 856
BseBI CCWGG 1 cut(s) 176
BseCI ATCGAT 1 cut(s) 882
BseDI CCNNGG 8 cut(s) 268, 347, 630, 714, 750, 894, 1050, 1108
BseGI GGATG 1 cut(s) 658
BseLI CCNNNNNNNGG 4 cut(s) 148, 202, 492, 643
BseMI GCAATG 2 cut(s) 587, 1147
BseMII CTCAG 3 cut(s) 877, 962, 1073
BseNI ACTGG 2 cut(s) 629, 1102
BsePI GCGCGC 1 cut(s) 278
BseRI GAGGAG 5 cut(s) 329, 370, 389, 454, 839
BseX3I CGGCCG 1 cut(s) 536
BseXI GCAGC 3 cut(s) 243, 348, 784
BseYI CCCAGC 1 cut(s) 1135
Bsh1285I CGRYCG 2 cut(s) 207, 539
BshFI GGCC 9 cut(s) 174, 496, 538, 671, 755, 839, 899, 1049, 1101
BshVI ATCGAT 1 cut(s) 882
BsiEI CGRYCG 2 cut(s) 207, 539
BsiHKAI GWGCWC 3 cut(s) 864, 1090, 1121
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 6 cut(s) 146, 497, 523, 644, 857, 984
BslFI GGGAC 5 cut(s) 366, 513, 1049, 1059, 1117
BslI CCNNNNNNNGG 4 cut(s) 148, 202, 492, 643
BsmAI GTCTC 2 cut(s) 184, 322
BsmBI CGTCTC 1 cut(s) 322
BsmFI GGGAC 5 cut(s) 366, 513, 1049, 1059, 1117
BsnI GGCC 9 cut(s) 174, 496, 538, 671, 755, 839, 899, 1049, 1101
Bso31I GGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 3 cut(s) 864, 1090, 1121
Bsp13I TCCGGA 1 cut(s) 856
Bsp19I CCATGG 1 cut(s) 1108
BspANI GGCC 9 cut(s) 174, 496, 538, 671, 755, 839, 899, 1049, 1101
BspCNI CTCAG 3 cut(s) 876, 961, 1074
BspDI ATCGAT 1 cut(s) 882
BspEI TCCGGA 1 cut(s) 856
BspLI GGNNCC 5 cut(s) 413, 556, 915, 1132, 1133
BspMI ACCTGC 2 cut(s) 150, 311
BspPI GGATC 8 cut(s) 289, 453, 730, 735, 791, 821, 908, 921
BspQI GCTCTTC 2 cut(s) 782, 996
BspTNI GGTCTC 1 cut(s) 184
BsrBI CCGCTC 3 cut(s) 128, 192, 675
BsrDI GCAATG 2 cut(s) 587, 1147
BsrI ACTGG 2 cut(s) 629, 1102
BssECI CCNNGG 8 cut(s) 268, 347, 630, 714, 750, 894, 1050, 1108
BssHII GCGCGC 1 cut(s) 278
BssNI GRCGYC 1 cut(s) 704
BssT1I CCWWGG 3 cut(s) 894, 1050, 1108
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 4 cut(s) 448, 472, 1040, 1177
Bst6I CTCTTC 3 cut(s) 578, 782, 996
BstACI GRCGYC 1 cut(s) 704
BstBAI YACGTR 1 cut(s) 17
BstC8I GCNNGC 4 cut(s) 280, 673, 757, 960
BstDEI CTNAG 3 cut(s) 863, 948, 1082
BstDSI CCRYGG 3 cut(s) 268, 347, 1108
BstENI CCTNNNNNAGG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 658
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 6 cut(s) 116, 252, 280, 282, 361, 907
BstMAI GTCTC 2 cut(s) 184, 322
BstMCI CGRYCG 2 cut(s) 207, 539
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 3 cut(s) 174, 496, 983
BstV1I GCAGC 3 cut(s) 243, 348, 784
BstX2I RGATCY 2 cut(s) 735, 913
BstXI CCANNNNNNTGG 1 cut(s) 1109
BstYI RGATCY 2 cut(s) 735, 913
BstZI CGGCCG 1 cut(s) 536
Bsu15I ATCGAT 1 cut(s) 882
BsuRI GGCC 9 cut(s) 174, 496, 538, 671, 755, 839, 899, 1049, 1101
BsuTUI ATCGAT 1 cut(s) 882
BtgI CCRYGG 3 cut(s) 268, 347, 1108
BtsCI GGATG 1 cut(s) 658
BtsIMutI CAGTG 3 cut(s) 135, 1045, 1173
BveI ACCTGC 2 cut(s) 150, 311
Cac8I GCNNGC 4 cut(s) 280, 673, 757, 960
CaiI CAGNNNCTG 1 cut(s) 592
CfoI GCGC 6 cut(s) 116, 252, 280, 282, 361, 907
Cfr13I GGNCC 4 cut(s) 627, 634, 670, 1131
Cfr42I CCGCGG 1 cut(s) 271
ClaI ATCGAT 1 cut(s) 882
CseI GACGC 4 cut(s) 406, 499, 693, 953
CspCI CAANNNNNGTGG 2 cut(s) 889, 924
CviAII CATG 4 cut(s) 27, 109, 1109, 1161
DdeI CTNAG 3 cut(s) 863, 948, 1082
DriI GACNNNNNGTC 1 cut(s) 852
EaeI YGGCCR 5 cut(s) 494, 536, 837, 897, 1099
EagI CGGCCG 1 cut(s) 536
Eam1104I CTCTTC 3 cut(s) 578, 782, 996
Eam1105I GACNNNNNGTC 1 cut(s) 852
EarI CTCTTC 3 cut(s) 578, 782, 996
EciI GGCGGA 2 cut(s) 364, 494
Ecl136II GAGCTC 2 cut(s) 862, 1088
EclXI CGGCCG 1 cut(s) 536
Eco130I CCWWGG 3 cut(s) 894, 1050, 1108
Eco147I AGGCCT 1 cut(s) 755
Eco24I GRGCYC 2 cut(s) 864, 1090
Eco31I GGTCTC 1 cut(s) 184
Eco47I GGWCC 3 cut(s) 627, 634, 1131
Eco52I CGGCCG 1 cut(s) 536
Eco53kI GAGCTC 2 cut(s) 862, 1088
Eco57I CTGAAG 1 cut(s) 752
Eco72I CACGTG 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 2 cut(s) 862, 1088
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoO109I RGGNCCY 2 cut(s) 634, 1131
EcoRI GAATTC 1 cut(s) 614
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 3 cut(s) 894, 1050, 1108
EcoT38I GRGCYC 2 cut(s) 864, 1090
ErhI CCWWGG 3 cut(s) 894, 1050, 1108
Esp3I CGTCTC 1 cut(s) 322
FaeI CATG 4 cut(s) 30, 112, 1112, 1164
FaiI YATR 6 cut(s) 28, 110, 809, 842, 1110, 1162
FaqI GGGAC 5 cut(s) 366, 513, 1049, 1059, 1117
FatI CATG 4 cut(s) 26, 108, 1108, 1160
FauI CCCGC 5 cut(s) 197, 203, 400, 680, 951
FblI GTMKAC 1 cut(s) 450
FokI GGATG 1 cut(s) 645
FriOI GRGCYC 2 cut(s) 864, 1090
FspBI CTAG 1 cut(s) 1013
GlaI GCGC 6 cut(s) 115, 251, 279, 281, 360, 906
GsaI CCCAGC 1 cut(s) 1139
GsuI CTGGAG 1 cut(s) 1188
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 9 cut(s) 174, 496, 538, 671, 755, 839, 899, 1049, 1101
HapII CCGG 6 cut(s) 146, 497, 523, 644, 857, 984
HgaI GACGC 4 cut(s) 406, 499, 693, 953
HhaI GCGC 6 cut(s) 116, 252, 280, 282, 361, 907
Hin1I GRCGYC 1 cut(s) 704
Hin1II CATG 4 cut(s) 30, 112, 1112, 1164
Hin6I GCGC 6 cut(s) 114, 250, 278, 280, 359, 905
HinP1I GCGC 6 cut(s) 114, 250, 278, 280, 359, 905
HindIII AAGCTT 2 cut(s) 764, 1094
HinfI GANTC 6 cut(s) 80, 154, 501, 589, 867, 1170
HpaII CCGG 6 cut(s) 146, 497, 523, 644, 857, 984
HphI GGTGA 5 cut(s) 301, 427, 436, 673, 739
Hpy166II GTNNAC 2 cut(s) 14, 451
Hpy8I GTNNAC 2 cut(s) 14, 451
Hpy99I CGWCG 8 cut(s) 422, 709, 785, 821, 892, 926, 929, 1146
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 4 cut(s) 448, 472, 1040, 1177
HpyCH4IV ACGT 4 cut(s) 16, 666, 887, 1029
HpyCH4V TGCA 2 cut(s) 4, 1023
HpyF3I CTNAG 3 cut(s) 863, 948, 1082
HpySE526I ACGT 4 cut(s) 16, 666, 887, 1029
Hsp92I GRCGYC 1 cut(s) 704
Hsp92II CATG 4 cut(s) 30, 112, 1112, 1164
HspAI GCGC 6 cut(s) 114, 250, 278, 280, 359, 905
KflI GGGWCCC 1 cut(s) 1131
Kpn2I TCCGGA 1 cut(s) 856
KspI CCGCGG 1 cut(s) 271
LguI GCTCTTC 2 cut(s) 782, 996
LmnI GCTCC 6 cut(s) 133, 197, 270, 417, 554, 859
Lsp1109I GCAGC 3 cut(s) 243, 348, 784
LweI GCATC 1 cut(s) 538
MaeI CTAG 1 cut(s) 1013
MaeII ACGT 4 cut(s) 16, 666, 887, 1029
MaeIII GTNAC 2 cut(s) 433, 1171
MauBI CGCGCGCG 1 cut(s) 278
MbiI CCGCTC 3 cut(s) 128, 192, 675
MboII GAAGA 4 cut(s) 565, 769, 970, 1013
MfeI CAATTG 1 cut(s) 850
MflI RGATCY 2 cut(s) 735, 913
MhlI GDGCHC 3 cut(s) 864, 1090, 1121
MlsI TGGCCA 3 cut(s) 839, 899, 1101
MluCI AATT 4 cut(s) 54, 224, 614, 850
MluNI TGGCCA 3 cut(s) 839, 899, 1101
MlyI GAGTC 4 cut(s) 495, 583, 876, 1179
MmeI TCCRAC 3 cut(s) 207, 345, 591
Mox20I TGGCCA 3 cut(s) 839, 899, 1101
MroI TCCGGA 1 cut(s) 856
MscI TGGCCA 3 cut(s) 839, 899, 1101
Msp20I TGGCCA 3 cut(s) 839, 899, 1101
MspA1I CMGCKG 1 cut(s) 270
MspI CCGG 6 cut(s) 146, 497, 523, 644, 857, 984
MspR9I CCNGG 3 cut(s) 176, 498, 985
MunI CAATTG 1 cut(s) 850
MvaI CCWGG 1 cut(s) 176
NciI CCSGG 2 cut(s) 498, 985
NcoI CCATGG 1 cut(s) 1108
NlaIII CATG 4 cut(s) 30, 112, 1112, 1164
NlaIV GGNNCC 5 cut(s) 413, 556, 915, 1132, 1133
NmeAIII GCCGAG 1 cut(s) 1100
NmuCI GTSAC 2 cut(s) 433, 1171
PaeR7I CTCGAG 1 cut(s) 236
PauI GCGCGC 1 cut(s) 278
PceI AGGCCT 1 cut(s) 755
PciSI GCTCTTC 2 cut(s) 782, 996
PfeI GAWTC 2 cut(s) 80, 154
PflFI GACNNNGTC 2 cut(s) 592, 703
PflMI CCANNNNNTGG 1 cut(s) 492
PleI GAGTC 4 cut(s) 495, 583, 875, 1178
PmaCI CACGTG 1 cut(s) 17
PmlI CACGTG 1 cut(s) 17
PpsI GAGTC 4 cut(s) 495, 583, 875, 1178
Ppu21I YACGTR 1 cut(s) 17
PpuMI RGGWCCY 2 cut(s) 634, 1131
Psp124BI GAGCTC 2 cut(s) 864, 1090
Psp5II RGGWCCY 2 cut(s) 634, 1131
Psp6I CCWGG 1 cut(s) 174
PspCI CACGTG 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 1135
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 5 cut(s) 413, 556, 915, 1132, 1133
PspPI GGNCC 4 cut(s) 627, 634, 670, 1131
PspPPI RGGWCCY 2 cut(s) 634, 1131
PstNI CAGNNNCTG 1 cut(s) 592
PsuI RGATCY 2 cut(s) 735, 913
PsyI GACNNNGTC 2 cut(s) 592, 703
PteI GCGCGC 1 cut(s) 278
SacI GAGCTC 2 cut(s) 864, 1090
SacII CCGCGG 1 cut(s) 271
SapI GCTCTTC 2 cut(s) 782, 996
Sau96I GGNCC 4 cut(s) 627, 634, 670, 1131
SchI GAGTC 4 cut(s) 495, 583, 876, 1179
ScrFI CCNGG 3 cut(s) 176, 498, 985
SduI GDGCHC 3 cut(s) 864, 1090, 1121
SfaNI GCATC 1 cut(s) 538
Sfr274I CTCGAG 1 cut(s) 236
Sfr303I CCGCGG 1 cut(s) 271
SgrBI CCGCGG 1 cut(s) 271
SinI GGWCC 3 cut(s) 627, 634, 1131
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 3 cut(s) 236, 260, 1091
SmoI CTYRAG 3 cut(s) 236, 260, 1091
Sse9I AATT 4 cut(s) 54, 224, 614, 850
SseBI AGGCCT 1 cut(s) 755
SspMI CTAG 1 cut(s) 1013
SstI GAGCTC 2 cut(s) 864, 1090
StuI AGGCCT 1 cut(s) 755
StyD4I CCNGG 3 cut(s) 174, 496, 983
StyI CCWWGG 3 cut(s) 894, 1050, 1108
TaaI ACNGT 4 cut(s) 448, 472, 1040, 1177
TaiI ACGT 4 cut(s) 19, 669, 890, 1032
TaqII GACCGA 2 cut(s) 193, 644
TasI AATT 4 cut(s) 54, 224, 614, 850
TauI GCSGC 9 cut(s) 119, 122, 125, 128, 222, 273, 510, 541, 965
TfiI GAWTC 2 cut(s) 80, 154
TscAI CASTG 3 cut(s) 142, 1045, 1180
TseFI GTSAC 2 cut(s) 433, 1171
TseI GCWGC 3 cut(s) 231, 361, 772
Tsp45I GTSAC 2 cut(s) 433, 1171
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 2 cut(s) 304, 421
TspRI CASTG 3 cut(s) 142, 1045, 1180
Tth111I GACNNNGTC 2 cut(s) 592, 703
Van91I CCANNNNNTGG 1 cut(s) 492
VpaK11BI GGWCC 3 cut(s) 627, 634, 1131
XagI CCTNNNNNAGG 1 cut(s) 146
XapI RAATTY 2 cut(s) 224, 614
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.