Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009306

Physical Location & Seq

Genomic Coordinates Forward (+)

51937617 .. 51938378

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG367200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGACCTGAAATGGAGTGATGAGTACGAGCACAGGATCAGCAAGAAGTGCAAGTATGGATCAGATGGGGACTGTTCCTATATGCCAACCAATGGCTACGCGAATGGAAATGGCCATGGTAATGGAAATGGGTTTTGGAGTGATGAGACTTGGGAAAGGCTGCAGTACCTATCACTTTGGATTGAGGTGGGGGAGTTGCTGACATCATTGCCAGAGGTGGGTCTGGACGAGTGCCCCAATCTGGAGGAGATTCAGATCCGGGTGGAAGGCGATTGCAGGGGAAGGCACAAACCCACACAGCGAGAATTCGGGTTAAGCTGCCTATCCCGTTTTCCTCGGCTGTCAAAGATGAAGCTGGATTGTGGTGATACTGTGGGATTTGCACTGACTGCTCCACCAGGACAGATGGACTTGTCACTTTGGGAGAGGTTCTTCCTCTCTGGGATTGGAGAATTGAGTCTCAGCGAAGTCGATTATTGGCCACCTCAAGACCGGGATGTGAACCAGAGGAGTCTCTGGCTTCCAGCTGCCGGATTGCTGGCAGAATGCATCACACTCCGGAAGCTTTTCATCCATGGGACTGCTCACGAACATTTCATGATGTTCCTTGTGAGAAACCCAAACCTCAACCTCAGCTTAAGGGATGTGCAACTGAGAGAGGATTACTATCCAGCGCCCGAAAATGAAATGAGTACAGAGATGAGGGTGGACTCGTGCTGTCGCTTTGAAGATGCGCTGAACAGGCGCACAATCCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006810 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009653 GO:0009914 GO:0009926 GO:0009934 GO:0009987 GO:0010016 GO:0010029 GO:0010035 GO:0010187 GO:0010817 GO:0016567 GO:0019005 GO:0019538 GO:0022603 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042221 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048367 GO:0048509 GO:0048518 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0060918 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080134 GO:1900140 GO:1901564 GO:1901700 GO:1902494 GO:1902584 GO:1990234 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

29.11

Weight (kDa)

4.95

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42620
fragaria_vesca	FvH4_2g05661 FvH4_2g12921 FvH4_4g05521 FvH4_6g27480
malus_domestica	MD09G1236800.v1.1 MD17G1266700.v1.1
prunus_persica	Prupe.3G117700_v2.0.a1
pyrus_communis	pycom09g15540
rosa_chinensis	RchiOBHm_Chr2g0128401 RchiOBHm_Chr2g0128411 RchiOBHm_Chr2g0129761
rosa_laevigata	RLG00000019101
rosa_multiflora	Rmu_ssc0000459.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114320
rosa_rugosa	Rorug02G0289700
rosa_samantha	Rh2AG340400 Rh2BG348700 Rh2BG348900 Rh2CG327800 Rh2DG367200
rosa_wichuraiana	Rw2G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccII	CGCG	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	558
AclWI	GGATC	3 cut(s)	44, 67, 250
AcoI	YGGCCR	2 cut(s)	112, 479
AcsI	RAATTY	1 cut(s)	305
AfaI	GTAC	3 cut(s)	26, 167, 694
AfiI	CCNNNNNNNGG	4 cut(s)	92, 218, 241, 530
AflII	CTTAAG	1 cut(s)	637
AgsI	TTSAA	1 cut(s)	728
AjnI	CCWGG	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AluBI	AGCT	5 cut(s)	318, 355, 527, 565, 636
AluI	AGCT	5 cut(s)	318, 355, 527, 565, 636
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	3 cut(s)	140, 464, 518
AlwI	GGATC	3 cut(s)	44, 67, 250
Aor13HI	TCCGGA	1 cut(s)	558
AoxI	GGCC	2 cut(s)	112, 479
ApeKI	GCWGC	3 cut(s)	160, 318, 527
ApoI	RAATTY	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	566
AspLEI	GCGC	3 cut(s)	676, 736, 747
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	260, 494
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	236
BalI	TGGCCA	2 cut(s)	114, 481
BauI	CACGAG	1 cut(s)	712
Bbv12I	GWGCWC	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	632
BbvI	GCAGC	3 cut(s)	147, 305, 514
BccI	CCATC	2 cut(s)	59, 400
BciT130I	CCWGG	1 cut(s)	399
BcnI	CCSGG	2 cut(s)	260, 494
BcoDI	GTCTC	3 cut(s)	140, 464, 518
BfmI	CTRYAG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	677
BfrI	CTTAAG	1 cut(s)	637
BisI	GCNGC	3 cut(s)	161, 319, 528
BlsI	GCNGC	3 cut(s)	162, 320, 529
Bme1390I	CCNGG	3 cut(s)	260, 399, 494
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	3 cut(s)	260, 399, 494
BmsI	GCATC	2 cut(s)	558, 721
BpmI	CTGGAG	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	471
BpuMI	CCSGG	2 cut(s)	260, 494
BsaBI	GATNNNNATC	2 cut(s)	254, 666
BsaJI	CCNNGG	3 cut(s)	115, 335, 574
BsaWI	WCCGGW	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 218, 241, 530
Bse3DI	GCAATG	1 cut(s)	206
Bse8I	GATNNNNATC	2 cut(s)	254, 666
BseAI	TCCGGA	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	3 cut(s)	115, 335, 574
BseGI	GGATG	3 cut(s)	502, 570, 649
BseJI	GATNNNNATC	2 cut(s)	254, 666
BseLI	CCNNNNNNNGG	4 cut(s)	92, 218, 241, 530
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	3 cut(s)	475, 644, 646
BseRI	GAGGAG	2 cut(s)	260, 523
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	147, 305, 514
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	114, 481
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	4 cut(s)	259, 493, 531, 559
BslFI	GGGAC	2 cut(s)	83, 592
BslI	CCNNNNNNNGG	4 cut(s)	92, 218, 241, 530
BsmAI	GTCTC	3 cut(s)	140, 464, 518
BsmFI	GGGAC	2 cut(s)	83, 592
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	2 cut(s)	114, 481
Bsp1286I	GDGCHC	2 cut(s)	33, 236
Bsp13I	TCCGGA	1 cut(s)	558
Bsp143I	GATC	3 cut(s)	36, 59, 255
Bsp19I	CCATGG	2 cut(s)	115, 574
BspANI	GGCC	2 cut(s)	114, 481
BspCNI	CTCAG	3 cut(s)	474, 645, 645
BspEI	TCCGGA	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	597
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	3 cut(s)	44, 67, 250
BspTI	CTTAAG	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	206
BssECI	CCNNGG	3 cut(s)	115, 335, 574
BssMI	GATC	3 cut(s)	36, 59, 255
BssSI	CACGAG	1 cut(s)	712
BssT1I	CCWWGG	2 cut(s)	115, 574
Bst2BI	CACGAG	1 cut(s)	712
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	2 cut(s)	74, 373
BstAFI	CTTAAG	1 cut(s)	637
BstAPI	GCANNNNNTGC	2 cut(s)	48, 389
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	3 cut(s)	461, 632, 653
BstDSI	CCRYGG	2 cut(s)	115, 574
BstF5I	GGATG	3 cut(s)	502, 570, 649
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	3 cut(s)	676, 736, 747
BstKTI	GATC	3 cut(s)	39, 62, 258
BstMAI	GTCTC	3 cut(s)	140, 464, 518
BstMBI	GATC	3 cut(s)	36, 59, 255
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 389, 742
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	3 cut(s)	258, 397, 492
BstSFI	CTRYAG	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	236
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	3 cut(s)	147, 305, 514
BstX2I	RGATCY	1 cut(s)	255
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	114, 481
BtgI	CCRYGG	2 cut(s)	115, 574
BtsCI	GGATG	3 cut(s)	502, 570, 649
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	540
CciI	TCATGA	1 cut(s)	597
CfoI	GCGC	3 cut(s)	676, 736, 747
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	25, 166, 693
CviAII	CATG	3 cut(s)	116, 575, 598
CviQI	GTAC	3 cut(s)	25, 166, 693
DdeI	CTNAG	3 cut(s)	461, 632, 653
DpnI	GATC	3 cut(s)	38, 61, 257
DpnII	GATC	3 cut(s)	36, 59, 255
EaeI	YGGCCR	2 cut(s)	112, 479
Eco130I	CCWWGG	2 cut(s)	115, 574
Eco47I	GGWCC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	115, 574
EcoT22I	ATGCAT	1 cut(s)	551
ErhI	CCWWGG	2 cut(s)	115, 574
FaeI	CATG	3 cut(s)	119, 578, 601
FaiI	YATR	6 cut(s)	57, 81, 83, 117, 576, 599
FaqI	GGGAC	2 cut(s)	83, 592
FatI	CATG	3 cut(s)	115, 574, 597
Fnu4HI	GCNGC	3 cut(s)	161, 319, 528
FokI	GGATG	3 cut(s)	509, 557, 656
Fsp4HI	GCNGC	3 cut(s)	161, 319, 528
GlaI	GCGC	3 cut(s)	675, 735, 746
GluI	GCNGC	3 cut(s)	161, 319, 528
GsuI	CTGGAG	1 cut(s)	263
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	2 cut(s)	114, 481
HapII	CCGG	4 cut(s)	259, 493, 531, 559
HhaI	GCGC	3 cut(s)	676, 736, 747
Hin1II	CATG	3 cut(s)	119, 578, 601
Hin6I	GCGC	3 cut(s)	674, 734, 745
HinP1I	GCGC	3 cut(s)	674, 734, 745
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	4 cut(s)	250, 457, 511, 710
HpaII	CCGG	4 cut(s)	259, 493, 531, 559
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	2 cut(s)	502, 709
Hpy188I	TCNGA	2 cut(s)	64, 255
Hpy188III	TCNNGA	6 cut(s)	224, 242, 488, 559, 587, 598
Hpy8I	GTNNAC	2 cut(s)	502, 709
HpyAV	CCTTC	2 cut(s)	260, 276
HpyCH4III	ACNGT	2 cut(s)	74, 373
HpyCH4V	TGCA	6 cut(s)	51, 163, 276, 383, 549, 649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 389, 742
HpyF3I	CTNAG	3 cut(s)	461, 632, 653
Hsp92II	CATG	3 cut(s)	119, 578, 601
HspAI	GCGC	3 cut(s)	674, 734, 745
Kpn2I	TCCGGA	1 cut(s)	558
Kzo9I	GATC	3 cut(s)	36, 59, 255
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	3 cut(s)	147, 305, 514
LweI	GCATC	2 cut(s)	558, 721
MaeIII	GTNAC	1 cut(s)	414
MalI	GATC	3 cut(s)	38, 61, 257
MboI	GATC	3 cut(s)	36, 59, 255
MboII	GAAGA	2 cut(s)	424, 740
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	2 cut(s)	33, 236
MlsI	TGGCCA	2 cut(s)	114, 481
MluCI	AATT	2 cut(s)	305, 452
MluNI	TGGCCA	2 cut(s)	114, 481
MlyI	GAGTC	3 cut(s)	466, 520, 704
Mox20I	TGGCCA	2 cut(s)	114, 481
Mph1103I	ATGCAT	1 cut(s)	551
MroI	TCCGGA	1 cut(s)	558
MroXI	GAANNNNTTC	1 cut(s)	566
MscI	TGGCCA	2 cut(s)	114, 481
MseI	TTAA	2 cut(s)	314, 638
MslI	CAYNNNNRTG	1 cut(s)	120
Msp20I	TGGCCA	2 cut(s)	114, 481
MspA1I	CMGCKG	1 cut(s)	527
MspCI	CTTAAG	1 cut(s)	637
MspI	CCGG	4 cut(s)	259, 493, 531, 559
MspR9I	CCNGG	3 cut(s)	260, 399, 494
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	48, 389, 742
NciI	CCSGG	2 cut(s)	260, 494
NcoI	CCATGG	2 cut(s)	115, 574
NdeII	GATC	3 cut(s)	36, 59, 255
NlaIII	CATG	3 cut(s)	119, 578, 601
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	414
NsiI	ATGCAT	1 cut(s)	551
PagI	TCATGA	1 cut(s)	597
PctI	GAATGC	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	1 cut(s)	250
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	162, 320, 529
PleI	GAGTC	3 cut(s)	465, 519, 704
PpsI	GAGTC	3 cut(s)	465, 519, 704
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	255
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	3 cut(s)	26, 167, 694
RsaNI	GTAC	3 cut(s)	25, 166, 693
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	314, 638
SatI	GCNGC	3 cut(s)	161, 319, 528
Sau3AI	GATC	3 cut(s)	36, 59, 255
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	466, 520, 704
ScrFI	CCNGG	3 cut(s)	260, 399, 494
SduI	GDGCHC	2 cut(s)	33, 236
SfaNI	GCATC	2 cut(s)	558, 721
SfcI	CTRYAG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	486, 637
SmoI	CTYRAG	2 cut(s)	486, 637
Sse9I	AATT	2 cut(s)	305, 452
StyD4I	CCNGG	3 cut(s)	258, 397, 492
StyI	CCWWGG	2 cut(s)	115, 574
TaaI	ACNGT	2 cut(s)	74, 373
TaqI	TCGA	1 cut(s)	471
TasI	AATT	2 cut(s)	305, 452
TatI	WGTACW	1 cut(s)	692
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	314, 638
Tru9I	TTAA	2 cut(s)	314, 638
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	414
TseI	GCWGC	3 cut(s)	160, 318, 527
Tsp45I	GTSAC	1 cut(s)	414
TspDTI	ATGAA	4 cut(s)	365, 559, 586, 699
TspRI	CASTG	1 cut(s)	390
Van91I	CCANNNNNTGG	1 cut(s)	92
Vha464I	CTTAAG	1 cut(s)	637
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	566
Zsp2I	ATGCAT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.