Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009306

Physical Location & Seq

Genomic Coordinates Forward (+)

45616249 .. 45619177

Gene Structure 2929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50137

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2265 bp

ATGCAATCGCGTTCACGTGGCTCTCCATGCCACACGACAAATCACACCCCCCCAATTACTACTCTCCTTTCATTTCTGGATTCCTCTCTTATCAATCTCAAAACCAGCATGAGCGCCGCCGCCGCCGCTCCGATCACTGACCTGCCGGAGGCGATTCTCGCCACCATCATCGGCCTGGTCTCCGACACCCGCTCCCGCAACTCGGTCGCCCTCGTCTGCCGCAAATTCCGCAGCCTCGAGAGAGCCACGCGCACCTCTCTCAAGCTCCGCGGCAACGCGCGCGACCTCCACCTGATCCCGACCTGCTTCACCTCCGTCTCCGACCTCGACCTCTCCCTCCTCTCGCCGTGGGGACACGCGCTGCTCTCCCCCTCCGCCTCCTCCACCGACCCCGCCCTCCTCGCCCAACGGCTCCGCGTCGCCTTCCCCTCCGTCACCTCCCTCACCGTCTACTCCCGATCCTCCTCCACCGTCCAGATTGTCGCCAATCTCTGGCCGGGACTCCGCCGCGTCAAGCTCGTCCGGTGGCATCTACGGCCGCAGTCGCCTCTCGGAGCCGACTTCGAGCCTCTCTTCCAGCAATGCCAGACTCTGTCCGATTTGGACTTGTCGGAATTCTACTACTGGACCGAGGACCTCCCTCCGGTTCTGGAAGCCCATCCCAACGTGGCCCGCTCTCTCACCAAGCTCAATCTCCTGACGGCGTCGATTACCGAGGGTTTCAAAGCCATCGAGATCCGATCCATCACCGAGGCCTGCCCCAAGCTTCAGCAGCTCTTCGTCGCTTGTATTTTTGATCCCAGATACATAGGGATCGTCGGGGAGGAGGCTCTCTTGGCCATATCGACCAATTGTCCGGAGCTCAGAGTCGTCCATCTCATCGATACGTCGTCCTTGGCCAACGCGCGTGGGGATCCAAACGACGACGGCTTCACATCGGAGGACGCTCAGATTGGGCGGGCGGCTTTGATCGACTTCTTCTCCGGGCTTCCTTTGCTGGAAGAGCTGGTGCTAGATGTGTGCAAGAACGTGAGGGACAGTGGATTGGCCTTGGAGGTTCTTGCTTCCAAGTGTCCCAGACTGAGAGCTCTCAAGCTTGGCCAGTTCCATGGGCTGTGCTCGGCGGTTGGGTCCCAGCTCGACGGCATTGCTCTGTGTCATGGGCTGGAGTCACTGTCGATCAAGAACTCTGCGGATTTGACAGATATGGGATTGATCGAAATCGCGAGGGGGTGTTGTAAGCTTGCAAAGTTTGAGGTGTATGGATGCAAGAAAATTACAGTGAAGGGGTTGAGGACGCTGGCTTGTTTGTTGAGGAAGACTTTAGTTGATGTGAGCATATCTTGCTGTAAGAACCTGGATGCTGCCGGCTCAGTCTGTGCTCTGGAGCCAATTCGCGATCGGATTCAGCGTCTGCACATAGATTGTGTCTGGCCACGGGACTTTGATCTCAATCAAGTCAATGATTATGATGTTGGTGATGATGAAAGTGTTGTGATGAGTCGGAATGGTAATGATGACATGGACCTGAAATGGAGTGATGAGTACGAGCACAGGATCAGCAAGAAGTGCAAGTATGGATCAGATGGGGACTGTTCCTATATGCCAACCAATGGCTACGCGAATGGAAATGGGTTTTGGAGTGATGAGACTTGGGAAAGGCTGCAGTACCTATCACTTTGGATTGAGGTGGGGGAGTTGCTGACATCATTGCCAGAGGTGGGTCTGGACGAGTGCCCCAATCTGGAGGAGATTCAGATCCGGGTGGAAGGCGATTGCAGGGGAAGGCACAAACCCACACAGCGAGAATTCGGGTTAAGCTGCCTATCCCGTTTTCCTCGGCTGTCAAAGATGAAGCTGGATTGTGGTGATACTGTGGGATTTGCACTGACTGCTCCACCAGGACAGATGGACTTGTCACTTTGGGAGAGGTTCTTCCTCTCTGGGATTGGAGAATTGAGTCTCAGCGAAGTCGATTATTGGCCACCTCAAGACCGGGATGTGAACCAGAGGAGTCTCTGGCTTCCAGCTGCCGGATTGCTGGCAGAATGCATCACACTCCGGAAGCTTTTCATCCATGGGACTGCTCACGAACATTTCATGATGTTCCTTGTGAGAAACCCAAACCTCAACCTCAGCTTAAGGGATGTGCAACTGAGAGAGGATTACTATCCAGCGCCCGAAAATGAAATGAGTACAGAGATGAGGGTGGACTCGTGCTGTCGCTTTGAAGATGCGCTGAACAGGCGCACAATCCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006810 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009653 GO:0009914 GO:0009926 GO:0009934 GO:0009987 GO:0010016 GO:0010029 GO:0010035 GO:0010187 GO:0010817 GO:0016567 GO:0019005 GO:0019538 GO:0022603 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042221 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048367 GO:0048509 GO:0048518 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0060918 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080134 GO:1900140 GO:1901564 GO:1901700 GO:1902494 GO:1902584 GO:1990234 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

754

Amino Acids

83.9

Weight (kDa)

5.48

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	47 - 85	5.7e-07	F-box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42620
fragaria_vesca	FvH4_2g05661 FvH4_2g12921 FvH4_4g05521 FvH4_6g27480
malus_domestica	MD09G1236800.v1.1 MD17G1266700.v1.1
prunus_persica	Prupe.3G117700_v2.0.a1
pyrus_communis	pycom09g15540
rosa_chinensis	RchiOBHm_Chr2g0128401 RchiOBHm_Chr2g0128411 RchiOBHm_Chr2g0129761
rosa_laevigata	RLG00000019101
rosa_multiflora	Rmu_ssc0000459.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114320
rosa_rugosa	Rorug02G0289700
rosa_samantha	Rh2AG340400 Rh2BG348700 Rh2BG348900 Rh2CG327800 Rh2DG367200
rosa_wichuraiana	Rw2G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	150, 311
AccB7I	CCANNNNNTGG	2 cut(s)	492, 1613
AccBSI	CCGCTC	3 cut(s)	128, 192, 675
AccI	GTMKAC	1 cut(s)	450
AccIII	TCCGGA	2 cut(s)	856, 2061
AcoI	YGGCCR	7 cut(s)	494, 536, 837, 897, 1099, 1433, 1982
AcsI	RAATTY	3 cut(s)	224, 614, 1808
AcuI	CTGAAG	1 cut(s)	752
AcvI	CACGTG	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	704
AfaI	GTAC	3 cut(s)	1547, 1670, 2197
AfiI	CCNNNNNNNGG	8 cut(s)	148, 202, 492, 643, 1613, 1721, 1744, 2033
AflII	CTTAAG	1 cut(s)	2140
AgsI	TTSAA	2 cut(s)	724, 2231
AhdI	GACNNNNNGTC	1 cut(s)	852
AjnI	CCWGG	3 cut(s)	174, 1356, 1900
AjuI	GAANNNNNNNTTGG	2 cut(s)	1621, 1653
Alw21I	GWGCWC	5 cut(s)	864, 1090, 1121, 1384, 1554
Alw26I	GTCTC	5 cut(s)	184, 322, 1643, 1967, 2021
AlwNI	CAGNNNCTG	2 cut(s)	592, 1414
Ama87I	CYCGRG	1 cut(s)	236
Aor13HI	TCCGGA	2 cut(s)	856, 2061
ApeKI	GCWGC	7 cut(s)	231, 361, 772, 1364, 1663, 1821, 2030
ApoI	RAATTY	3 cut(s)	224, 614, 1808
Asp700I	GAANNNNTTC	1 cut(s)	2069
AspLEI	GCGC	9 cut(s)	116, 252, 280, 282, 361, 907, 2179, 2239, 2250
AspS9I	GGNCC	5 cut(s)	627, 634, 670, 1131, 1525
AsuC2I	CCSGG	4 cut(s)	498, 985, 1763, 1997
AsuHPI	GGTGA	7 cut(s)	301, 427, 436, 673, 739, 1490, 1880
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	4 cut(s)	627, 634, 1131, 1525
BaeGI	GKGCMC	1 cut(s)	1739
BalI	TGGCCA	5 cut(s)	839, 899, 1101, 1435, 1984
BamHI	GGATCC	1 cut(s)	913
BanII	GRGCYC	2 cut(s)	864, 1090
BauI	CACGAG	1 cut(s)	2215
BbrPI	CACGTG	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	1325
Bbv12I	GWGCWC	5 cut(s)	864, 1090, 1121, 1384, 1554
BbvCI	CCTCAGC	1 cut(s)	2135
BbvI	GCAGC	7 cut(s)	243, 348, 784, 1351, 1650, 1808, 2017
BccI	CCATC	7 cut(s)	173, 666, 737, 752, 882, 1580, 1903
BceAI	ACGGC	6 cut(s)	331, 425, 551, 717, 943, 1159
BcgI	CGANNNNNNTGC	4 cut(s)	187, 221, 1130, 1164
BciT130I	CCWGG	3 cut(s)	176, 1358, 1902
BcnI	CCSGG	4 cut(s)	498, 985, 1763, 1997
BcoDI	GTCTC	5 cut(s)	184, 322, 1643, 1967, 2021
BfaI	CTAG	1 cut(s)	1013
BfmI	CTRYAG	1 cut(s)	1664
BfoI	RGCGCY	2 cut(s)	117, 2180
BfrI	CTTAAG	1 cut(s)	2140
BfuAI	ACCTGC	2 cut(s)	150, 311
Bme1390I	CCNGG	7 cut(s)	176, 498, 985, 1358, 1763, 1902, 1997
Bme18I	GGWCC	4 cut(s)	627, 634, 1131, 1525
BmeRI	GACNNNNNGTC	1 cut(s)	852
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	5 cut(s)	627, 634, 670, 1131, 1525
BmiI	GGNNCC	6 cut(s)	413, 556, 915, 1132, 1133, 1389
BmrFI	CCNGG	7 cut(s)	176, 498, 985, 1358, 1763, 1902, 1997
BmsI	GCATC	5 cut(s)	538, 1256, 1351, 2061, 2224
BpiI	GAAGAC	1 cut(s)	1325
BpmI	CTGGAG	3 cut(s)	1187, 1406, 1766
Bpu10I	CCTNAGC	1 cut(s)	2135
BpuEI	CTTGAG	3 cut(s)	245, 1076, 1974
BpuMI	CCSGG	4 cut(s)	498, 985, 1763, 1997
Bsa29I	ATCGAT	1 cut(s)	882
BsaAI	YACGTR	1 cut(s)	17
BsaBI	GATNNNNATC	4 cut(s)	1220, 1452, 1757, 2169
BsaHI	GRCGYC	1 cut(s)	704
BsaI	GGTCTC	1 cut(s)	184
BsaWI	WCCGGW	4 cut(s)	522, 643, 856, 2061
BsaXI	ACNNNNNCTCC	6 cut(s)	176, 206, 965, 995, 1160, 1190
Bsc4I	CCNNNNNNNGG	8 cut(s)	148, 202, 492, 643, 1613, 1721, 1744, 2033
Bse118I	RCCGGY	1 cut(s)	1367
Bse1I	ACTGG	2 cut(s)	629, 1102
Bse3DI	GCAATG	3 cut(s)	587, 1146, 1709
Bse8I	GATNNNNATC	4 cut(s)	1220, 1452, 1757, 2169
BseAI	TCCGGA	2 cut(s)	856, 2061
BseBI	CCWGG	3 cut(s)	176, 1358, 1902
BseCI	ATCGAT	1 cut(s)	882
BseGI	GGATG	6 cut(s)	658, 1271, 1366, 2005, 2073, 2152
BseJI	GATNNNNATC	4 cut(s)	1220, 1452, 1757, 2169
BseLI	CCNNNNNNNGG	8 cut(s)	148, 202, 492, 643, 1613, 1721, 1744, 2033
BseMI	GCAATG	3 cut(s)	587, 1146, 1709
BseMII	CTCAG	7 cut(s)	877, 962, 1073, 1386, 1978, 2147, 2149
BseNI	ACTGG	2 cut(s)	629, 1102
BsePI	GCGCGC	1 cut(s)	278
BseRI	GAGGAG	7 cut(s)	329, 370, 389, 454, 839, 1763, 2026
BseSI	GKGCMC	1 cut(s)	1739
BseX3I	CGGCCG	1 cut(s)	536
BseXI	GCAGC	7 cut(s)	243, 348, 784, 1351, 1650, 1808, 2017
BseYI	CCCAGC	1 cut(s)	1134
BsgI	GTGCAG	1 cut(s)	1400
Bsh1285I	CGRYCG	3 cut(s)	207, 539, 1402
BshVI	ATCGAT	1 cut(s)	882
BsiEI	CGRYCG	3 cut(s)	207, 539, 1402
BsiHKAI	GWGCWC	5 cut(s)	864, 1090, 1121, 1384, 1554
BsiHKCI	CYCGRG	1 cut(s)	236
BslFI	GGGAC	8 cut(s)	366, 513, 1049, 1059, 1117, 1454, 1604, 2095
BslI	CCNNNNNNNGG	8 cut(s)	148, 202, 492, 643, 1613, 1721, 1744, 2033
BsmAI	GTCTC	5 cut(s)	184, 322, 1643, 1967, 2021
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	8 cut(s)	366, 513, 1049, 1059, 1117, 1454, 1604, 2095
BsmI	GAATGC	1 cut(s)	2054
Bso31I	GGTCTC	1 cut(s)	184
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	6 cut(s)	864, 1090, 1121, 1384, 1554, 1739
Bsp13I	TCCGGA	2 cut(s)	856, 2061
Bsp19I	CCATGG	2 cut(s)	1108, 2077
Bsp68I	TCGCGA	2 cut(s)	1226, 1398
BspCNI	CTCAG	7 cut(s)	876, 961, 1074, 1385, 1977, 2148, 2148
BspDI	ATCGAT	1 cut(s)	882
BspEI	TCCGGA	2 cut(s)	856, 2061
BspHI	TCATGA	1 cut(s)	2100
BspLI	GGNNCC	6 cut(s)	413, 556, 915, 1132, 1133, 1389
BspMAI	CTGCAG	1 cut(s)	1668
BspMI	ACCTGC	2 cut(s)	150, 311
BspQI	GCTCTTC	2 cut(s)	782, 996
BspTI	CTTAAG	1 cut(s)	2140
BspTNI	GGTCTC	1 cut(s)	184
BsrBI	CCGCTC	3 cut(s)	128, 192, 675
BsrDI	GCAATG	3 cut(s)	587, 1146, 1709
BsrFI	RCCGGY	1 cut(s)	1367
BsrI	ACTGG	2 cut(s)	629, 1102
BssAI	RCCGGY	1 cut(s)	1367
BssHII	GCGCGC	1 cut(s)	278
BssNI	GRCGYC	1 cut(s)	704
BssSI	CACGAG	1 cut(s)	2215
BssT1I	CCWWGG	4 cut(s)	894, 1050, 1108, 2077
Bst2BI	CACGAG	1 cut(s)	2215
Bst2UI	CCWGG	3 cut(s)	176, 1358, 1902
Bst4CI	ACNGT	7 cut(s)	448, 472, 1040, 1176, 1282, 1595, 1876
Bst6I	CTCTTC	3 cut(s)	578, 782, 996
BstACI	GRCGYC	1 cut(s)	704
BstAFI	CTTAAG	1 cut(s)	2140
BstAPI	GCANNNNNTGC	3 cut(s)	1344, 1569, 1892
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	8 cut(s)	280, 673, 757, 960, 1245, 1302, 1369, 2043
BstDEI	CTNAG	7 cut(s)	863, 948, 1082, 1372, 1964, 2135, 2156
BstDSI	CCRYGG	5 cut(s)	268, 347, 1108, 1436, 2077
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	6 cut(s)	658, 1271, 1366, 2005, 2073, 2152
BstH2I	RGCGCY	2 cut(s)	117, 2180
BstHHI	GCGC	9 cut(s)	116, 252, 280, 282, 361, 907, 2179, 2239, 2250
BstMAI	GTCTC	5 cut(s)	184, 322, 1643, 1967, 2021
BstMCI	CGRYCG	3 cut(s)	207, 539, 1402
BstNI	CCWGG	3 cut(s)	176, 1358, 1902
BstSCI	CCNGG	7 cut(s)	174, 496, 983, 1356, 1761, 1900, 1995
BstSFI	CTRYAG	1 cut(s)	1664
BstSLI	GKGCMC	1 cut(s)	1739
BstV1I	GCAGC	7 cut(s)	243, 348, 784, 1351, 1650, 1808, 2017
BstV2I	GAAGAC	1 cut(s)	1325
BstX2I	RGATCY	3 cut(s)	735, 913, 1758
BstXI	CCANNNNNNTGG	1 cut(s)	1109
BstYI	RGATCY	3 cut(s)	735, 913, 1758
BstZI	CGGCCG	1 cut(s)	536
Bsu15I	ATCGAT	1 cut(s)	882
BsuTUI	ATCGAT	1 cut(s)	882
BtgI	CCRYGG	5 cut(s)	268, 347, 1108, 1436, 2077
BtsCI	GGATG	6 cut(s)	658, 1271, 1366, 2005, 2073, 2152
BtsIMutI	CAGTG	5 cut(s)	135, 1045, 1172, 1287, 1886
BtuMI	TCGCGA	2 cut(s)	1226, 1398
BveI	ACCTGC	2 cut(s)	150, 311
Cac8I	GCNNGC	8 cut(s)	280, 673, 757, 960, 1245, 1302, 1369, 2043
CaiI	CAGNNNCTG	2 cut(s)	592, 1414
CciI	TCATGA	1 cut(s)	2100
CfoI	GCGC	9 cut(s)	116, 252, 280, 282, 361, 907, 2179, 2239, 2250
Cfr10I	RCCGGY	1 cut(s)	1367
Cfr13I	GGNCC	5 cut(s)	627, 634, 670, 1131, 1525
Cfr42I	CCGCGG	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	882
CseI	GACGC	6 cut(s)	406, 499, 693, 953, 1306, 1400
Csp6I	GTAC	3 cut(s)	1546, 1669, 2196
CspCI	CAANNNNNGTGG	2 cut(s)	889, 924
CviAII	CATG	7 cut(s)	27, 109, 1109, 1160, 1522, 2078, 2101
CviQI	GTAC	3 cut(s)	1546, 1669, 2196
DdeI	CTNAG	7 cut(s)	863, 948, 1082, 1372, 1964, 2135, 2156
DriI	GACNNNNNGTC	1 cut(s)	852
EaeI	YGGCCR	7 cut(s)	494, 536, 837, 897, 1099, 1433, 1982
EagI	CGGCCG	1 cut(s)	536
Eam1104I	CTCTTC	3 cut(s)	578, 782, 996
Eam1105I	GACNNNNNGTC	1 cut(s)	852
EarI	CTCTTC	3 cut(s)	578, 782, 996
EciI	GGCGGA	2 cut(s)	364, 494
Ecl136II	GAGCTC	2 cut(s)	862, 1088
EclXI	CGGCCG	1 cut(s)	536
Eco130I	CCWWGG	4 cut(s)	894, 1050, 1108, 2077
Eco147I	AGGCCT	1 cut(s)	755
Eco24I	GRGCYC	2 cut(s)	864, 1090
Eco31I	GGTCTC	1 cut(s)	184
Eco47I	GGWCC	4 cut(s)	627, 634, 1131, 1525
Eco52I	CGGCCG	1 cut(s)	536
Eco53kI	GAGCTC	2 cut(s)	862, 1088
Eco57I	CTGAAG	1 cut(s)	752
Eco72I	CACGTG	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	2 cut(s)	862, 1088
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	2 cut(s)	634, 1131
EcoRI	GAATTC	2 cut(s)	614, 1808
EcoRII	CCWGG	3 cut(s)	174, 1356, 1900
EcoT14I	CCWWGG	4 cut(s)	894, 1050, 1108, 2077
EcoT22I	ATGCAT	1 cut(s)	2054
EcoT38I	GRGCYC	2 cut(s)	864, 1090
ErhI	CCWWGG	4 cut(s)	894, 1050, 1108, 2077
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	7 cut(s)	30, 112, 1112, 1163, 1525, 2081, 2104
FaqI	GGGAC	8 cut(s)	366, 513, 1049, 1059, 1117, 1454, 1604, 2095
FatI	CATG	7 cut(s)	26, 108, 1108, 1159, 1521, 2077, 2100
FauI	CCCGC	5 cut(s)	197, 203, 400, 680, 951
FblI	GTMKAC	1 cut(s)	450
FokI	GGATG	6 cut(s)	645, 1278, 1373, 2012, 2060, 2159
FriOI	GRGCYC	2 cut(s)	864, 1090
FspBI	CTAG	1 cut(s)	1013
GlaI	GCGC	9 cut(s)	115, 251, 279, 281, 360, 906, 2178, 2238, 2249
GsaI	CCCAGC	1 cut(s)	1138
GsuI	CTGGAG	3 cut(s)	1187, 1406, 1766
HaeII	RGCGCY	2 cut(s)	117, 2180
HgaI	GACGC	6 cut(s)	406, 499, 693, 953, 1306, 1400
HhaI	GCGC	9 cut(s)	116, 252, 280, 282, 361, 907, 2179, 2239, 2250
Hin1I	GRCGYC	1 cut(s)	704
Hin1II	CATG	7 cut(s)	30, 112, 1112, 1163, 1525, 2081, 2104
Hin6I	GCGC	9 cut(s)	114, 250, 278, 280, 359, 905, 2177, 2237, 2248
HinP1I	GCGC	9 cut(s)	114, 250, 278, 280, 359, 905, 2177, 2237, 2248
HindIII	AAGCTT	4 cut(s)	764, 1094, 1241, 2066
HphI	GGTGA	7 cut(s)	301, 427, 436, 673, 739, 1490, 1880
Hpy166II	GTNNAC	4 cut(s)	14, 451, 2005, 2212
Hpy8I	GTNNAC	4 cut(s)	14, 451, 2005, 2212
Hpy99I	CGWCG	8 cut(s)	422, 709, 785, 821, 892, 926, 929, 1145
HpyAV	CCTTC	4 cut(s)	433, 1279, 1763, 1779
HpyCH4III	ACNGT	7 cut(s)	448, 472, 1040, 1176, 1282, 1595, 1876
HpyCH4IV	ACGT	4 cut(s)	16, 666, 887, 1029
HpyF3I	CTNAG	7 cut(s)	863, 948, 1082, 1372, 1964, 2135, 2156
HpySE526I	ACGT	4 cut(s)	16, 666, 887, 1029
Hsp92I	GRCGYC	1 cut(s)	704
Hsp92II	CATG	7 cut(s)	30, 112, 1112, 1163, 1525, 2081, 2104
HspAI	GCGC	9 cut(s)	114, 250, 278, 280, 359, 905, 2177, 2237, 2248
KflI	GGGWCCC	1 cut(s)	1131
Kpn2I	TCCGGA	2 cut(s)	856, 2061
KroI	GCCGGC	1 cut(s)	1367
KroNI	GCCGGC	1 cut(s)	1369
KspI	CCGCGG	1 cut(s)	271
LguI	GCTCTTC	2 cut(s)	782, 996
LmnI	GCTCC	8 cut(s)	133, 197, 270, 417, 554, 859, 1387, 1900
Lsp1109I	GCAGC	7 cut(s)	243, 348, 784, 1351, 1650, 1808, 2017
LweI	GCATC	5 cut(s)	538, 1256, 1351, 2061, 2224
MaeI	CTAG	1 cut(s)	1013
MaeII	ACGT	4 cut(s)	16, 666, 887, 1029
MaeIII	GTNAC	3 cut(s)	433, 1170, 1917
MauBI	CGCGCGCG	1 cut(s)	278
MbiI	CCGCTC	3 cut(s)	128, 192, 675
MboII	GAAGA	7 cut(s)	565, 769, 970, 1013, 1330, 1927, 2243
MfeI	CAATTG	1 cut(s)	850
MflI	RGATCY	3 cut(s)	735, 913, 1758
MhlI	GDGCHC	6 cut(s)	864, 1090, 1121, 1384, 1554, 1739
MlsI	TGGCCA	5 cut(s)	839, 899, 1101, 1435, 1984
MluCI	AATT	8 cut(s)	54, 224, 614, 850, 1275, 1392, 1808, 1955
MluNI	TGGCCA	5 cut(s)	839, 899, 1101, 1435, 1984
MlyI	GAGTC	8 cut(s)	495, 583, 876, 1178, 1510, 1969, 2023, 2207
MmeI	TCCRAC	4 cut(s)	207, 345, 591, 1484
Mox20I	TGGCCA	5 cut(s)	839, 899, 1101, 1435, 1984
Mph1103I	ATGCAT	1 cut(s)	2054
MroI	TCCGGA	2 cut(s)	856, 2061
MroNI	GCCGGC	1 cut(s)	1367
MroXI	GAANNNNTTC	1 cut(s)	2069
MscI	TGGCCA	5 cut(s)	839, 899, 1101, 1435, 1984
MseI	TTAA	2 cut(s)	1817, 2141
Msp20I	TGGCCA	5 cut(s)	839, 899, 1101, 1435, 1984
MspA1I	CMGCKG	2 cut(s)	270, 2030
MspCI	CTTAAG	1 cut(s)	2140
MspR9I	CCNGG	7 cut(s)	176, 498, 985, 1358, 1763, 1902, 1997
MunI	CAATTG	1 cut(s)	850
Mva1269I	GAATGC	1 cut(s)	2054
MvaI	CCWGG	3 cut(s)	176, 1358, 1902
NaeI	GCCGGC	1 cut(s)	1369
NciI	CCSGG	4 cut(s)	498, 985, 1763, 1997
NcoI	CCATGG	2 cut(s)	1108, 2077
NgoMIV	GCCGGC	1 cut(s)	1367
NlaIII	CATG	7 cut(s)	30, 112, 1112, 1163, 1525, 2081, 2104
NlaIV	GGNNCC	6 cut(s)	413, 556, 915, 1132, 1133, 1389
NmeAIII	GCCGAG	2 cut(s)	1100, 1819
NmuCI	GTSAC	3 cut(s)	433, 1170, 1917
NruI	TCGCGA	2 cut(s)	1226, 1398
NsiI	ATGCAT	1 cut(s)	2054
PaeR7I	CTCGAG	1 cut(s)	236
PagI	TCATGA	1 cut(s)	2100
PauI	GCGCGC	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	755
PciSI	GCTCTTC	2 cut(s)	782, 996
PcsI	WCGNNNNNNNCGW	1 cut(s)	1408
PctI	GAATGC	1 cut(s)	2054
PdiI	GCCGGC	1 cut(s)	1369
PdmI	GAANNNNTTC	1 cut(s)	2069
PfeI	GAWTC	4 cut(s)	80, 154, 1405, 1753
PflFI	GACNNNGTC	2 cut(s)	592, 703
PflMI	CCANNNNNTGG	2 cut(s)	492, 1613
Ple19I	CGATCG	1 cut(s)	1402
PleI	GAGTC	8 cut(s)	495, 583, 875, 1177, 1509, 1968, 2022, 2207
PmaCI	CACGTG	1 cut(s)	17
PmlI	CACGTG	1 cut(s)	17
PpsI	GAGTC	8 cut(s)	495, 583, 875, 1177, 1509, 1968, 2022, 2207
Ppu21I	YACGTR	1 cut(s)	17
PpuMI	RGGWCCY	2 cut(s)	634, 1131
Psp124BI	GAGCTC	2 cut(s)	864, 1090
Psp5II	RGGWCCY	2 cut(s)	634, 1131
Psp6I	CCWGG	3 cut(s)	174, 1356, 1900
PspCI	CACGTG	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	1134
PspGI	CCWGG	3 cut(s)	174, 1356, 1900
PspN4I	GGNNCC	6 cut(s)	413, 556, 915, 1132, 1133, 1389
PspPI	GGNCC	5 cut(s)	627, 634, 670, 1131, 1525
PspPPI	RGGWCCY	2 cut(s)	634, 1131
PstI	CTGCAG	1 cut(s)	1668
PstNI	CAGNNNCTG	2 cut(s)	592, 1414
PsuI	RGATCY	3 cut(s)	735, 913, 1758
PsyI	GACNNNGTC	2 cut(s)	592, 703
PteI	GCGCGC	1 cut(s)	278
PvuI	CGATCG	1 cut(s)	1402
PvuII	CAGCTG	1 cut(s)	2030
RruI	TCGCGA	2 cut(s)	1226, 1398
RsaI	GTAC	3 cut(s)	1547, 1670, 2197
RsaNI	GTAC	3 cut(s)	1546, 1669, 2196
SacI	GAGCTC	2 cut(s)	864, 1090
SacII	CCGCGG	1 cut(s)	271
SapI	GCTCTTC	2 cut(s)	782, 996
SaqAI	TTAA	2 cut(s)	1817, 2141
Sau96I	GGNCC	5 cut(s)	627, 634, 670, 1131, 1525
SchI	GAGTC	8 cut(s)	495, 583, 876, 1178, 1510, 1969, 2023, 2207
ScrFI	CCNGG	7 cut(s)	176, 498, 985, 1358, 1763, 1902, 1997
SduI	GDGCHC	6 cut(s)	864, 1090, 1121, 1384, 1554, 1739
SfaNI	GCATC	5 cut(s)	538, 1256, 1351, 2061, 2224
SfcI	CTRYAG	1 cut(s)	1664
Sfr274I	CTCGAG	1 cut(s)	236
Sfr303I	CCGCGG	1 cut(s)	271
SgrBI	CCGCGG	1 cut(s)	271
SinI	GGWCC	4 cut(s)	627, 634, 1131, 1525
SlaI	CTCGAG	1 cut(s)	236
SmlI	CTYRAG	5 cut(s)	236, 260, 1091, 1989, 2140
SmoI	CTYRAG	5 cut(s)	236, 260, 1091, 1989, 2140
Sse9I	AATT	8 cut(s)	54, 224, 614, 850, 1275, 1392, 1808, 1955
SseBI	AGGCCT	1 cut(s)	755
SspMI	CTAG	1 cut(s)	1013
SstI	GAGCTC	2 cut(s)	864, 1090
StuI	AGGCCT	1 cut(s)	755
StyD4I	CCNGG	7 cut(s)	174, 496, 983, 1356, 1761, 1900, 1995
StyI	CCWWGG	4 cut(s)	894, 1050, 1108, 2077
TaaI	ACNGT	7 cut(s)	448, 472, 1040, 1176, 1282, 1595, 1876
TaiI	ACGT	4 cut(s)	19, 669, 890, 1032
TaqII	GACCGA	2 cut(s)	193, 644
TasI	AATT	8 cut(s)	54, 224, 614, 850, 1275, 1392, 1808, 1955
TatI	WGTACW	1 cut(s)	2195
TauI	GCSGC	9 cut(s)	119, 122, 125, 128, 222, 273, 510, 541, 965
TfiI	GAWTC	4 cut(s)	80, 154, 1405, 1753
Tru1I	TTAA	2 cut(s)	1817, 2141
Tru9I	TTAA	2 cut(s)	1817, 2141
TscAI	CASTG	5 cut(s)	142, 1045, 1179, 1287, 1893
TseFI	GTSAC	3 cut(s)	433, 1170, 1917
TseI	GCWGC	7 cut(s)	231, 361, 772, 1364, 1663, 1821, 2030
Tsp45I	GTSAC	3 cut(s)	433, 1170, 1917
TspDTI	ATGAA	6 cut(s)	60, 1500, 1868, 2062, 2089, 2202
TspGWI	ACGGA	2 cut(s)	304, 421
TspRI	CASTG	5 cut(s)	142, 1045, 1179, 1287, 1893
Tth111I	GACNNNGTC	2 cut(s)	592, 703
Van91I	CCANNNNNTGG	2 cut(s)	492, 1613
Vha464I	CTTAAG	1 cut(s)	2140
VpaK11BI	GGWCC	4 cut(s)	627, 634, 1131, 1525
XagI	CCTNNNNNAGG	1 cut(s)	146
XapI	RAATTY	3 cut(s)	224, 614, 1808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	2069
XspI	CTAG	1 cut(s)	1013
Zsp2I	ATGCAT	1 cut(s)	2054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.