Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009306

Physical Location & Seq

Genomic Coordinates Forward (+)

11345872 .. 11348963

Gene Structure 3092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12921.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCCGGCGACAGCCCCTCCTCCTCCTTGTCGCTCGACGATGCCGGAAAACAAGCTCAAGCGTCGCCATTAGCCCTGCCTCTTCGCTGGAGCCGCCTCCCCGGAGCTCCGGTACACGCCGCCTGCAACTCCGACACCCGCACCTGCAACTCTGACACCCGCACTTGCAACTCCGTCTCCCGCAAATTCCGCACAGTTGAGAGGGCCACGCACGCCTCCCTCACGCTCTGCCGCAACACGCGCGACCTCCACCTGATCCCGACCTGCTTCTCCTCCGTCTCCGACCTCGACCTCTCCCTCCTCTCCCCTTGGGGCCACGCGCTGCTCTCCCCCTCTGACTCCTCCACCGACCCTGCCCTCCTCGCCCATCGCCTGCGCCTCGCCTTTCCCGTCGTCACTTCCCTCACCGTCTACTCCCGATCCTCCACCGTCGAGATCGTCTCCAGTCTTTGGCCGCGTTTGCGCCGCGTCACGCTCTCCTCCGGTTGTCGACGAGGTGGTGAGGAGGAGGTGGAGGCTCGACGGCGACGATGGCCTGGGGAGGAGGAGGGGCTGCCGCCGGGGCCCTTGCTAGTGGTAGGGTGGATAAACAGGGGCGGTCTATCTTCACTGGTCAAGGAAATTAAGATGGCGACCAAATCCAGCGAAGAAATGATACGCATACTCGTGGTCGGGATATTTCTGGGTCAGCAGAAAGCTCCTAAACCAAGCCTTAGAGATTTGGAAAGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006810 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009653 GO:0009914 GO:0009926 GO:0009934 GO:0009987 GO:0010016 GO:0010029 GO:0010035 GO:0010187 GO:0010817 GO:0016567 GO:0019005 GO:0019538 GO:0022603 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042221 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048367 GO:0048509 GO:0048518 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0060918 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080134 GO:1900140 GO:1901564 GO:1901700 GO:1902494 GO:1902584 GO:1990234 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

26.6

Weight (kDa)

9.24

Isoelectric Point (pI)

72.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42620
fragaria_vesca	FvH4_2g05661 FvH4_2g12921 FvH4_4g05521 FvH4_6g27480
malus_domestica	MD09G1236800.v1.1 MD17G1266700.v1.1
prunus_persica	Prupe.3G117700_v2.0.a1
pyrus_communis	pycom09g15540
rosa_chinensis	RchiOBHm_Chr2g0128401 RchiOBHm_Chr2g0128411 RchiOBHm_Chr2g0129761
rosa_laevigata	RLG00000019101
rosa_multiflora	Rmu_ssc0000459.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114320
rosa_rugosa	Rorug02G0289700
rosa_samantha	Rh2AG340400 Rh2BG348700 Rh2BG348900 Rh2CG327800 Rh2DG367200
rosa_wichuraiana	Rw2G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	152
Acc36I	ACCTGC	2 cut(s)	152, 272
AccB7I	CCANNNNNTGG	1 cut(s)	450
AccI	GTMKAC	2 cut(s)	411, 490
AccII	CGCG	5 cut(s)	241, 243, 320, 457, 468
AclWI	GGATC	2 cut(s)	250, 414
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	450
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	3 cut(s)	56, 107, 698
AluI	AGCT	3 cut(s)	56, 107, 698
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	3 cut(s)	181, 283, 445
AlwI	GGATC	2 cut(s)	250, 414
AoxI	GGCC	5 cut(s)	204, 313, 452, 533, 563
ApaI	GGGCCC	1 cut(s)	567
ApeKI	GCWGC	2 cut(s)	322, 553
ApoI	RAATTY	1 cut(s)	185
AspLEI	GCGC	4 cut(s)	243, 322, 378, 465
AspS9I	GGNCC	4 cut(s)	204, 313, 563, 564
AsuC2I	CCSGG	2 cut(s)	102, 561
AsuHPI	GGTGA	2 cut(s)	397, 512
BaeGI	GKGCMC	1 cut(s)	567
BanII	GRGCYC	2 cut(s)	109, 567
BarI	GAAGNNNNNNTAC	2 cut(s)	639, 671
BauI	CACGAG	1 cut(s)	665
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	2 cut(s)	309, 540
BccI	CCATC	3 cut(s)	375, 525, 622
BceAI	ACGGC	1 cut(s)	539
BciT130I	CCWGG	1 cut(s)	537
BcnI	CCSGG	2 cut(s)	102, 561
BcoDI	GTCTC	3 cut(s)	181, 283, 445
BfaI	CTAG	1 cut(s)	572
BfuAI	ACCTGC	2 cut(s)	152, 272
BglI	GCCNNNNNGGC	1 cut(s)	562
BisI	GCNGC	8 cut(s)	94, 120, 232, 323, 455, 466, 554, 557
BlsI	GCNGC	8 cut(s)	95, 121, 233, 324, 456, 467, 555, 558
Bme1390I	CCNGG	3 cut(s)	102, 537, 561
BmgT120I	GGNCC	4 cut(s)	204, 313, 563, 564
BmiI	GGNNCC	4 cut(s)	92, 314, 564, 565
BmrFI	CCNGG	3 cut(s)	102, 537, 561
BmsI	GCATC	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	2 cut(s)	109, 427
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	2 cut(s)	102, 561
BsaJI	CCNNGG	4 cut(s)	100, 308, 536, 560
BsaWI	WCCGGW	2 cut(s)	109, 482
BsaXI	ACNNNNNCTCC	5 cut(s)	32, 96, 126, 161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	450
Bse1I	ACTGG	2 cut(s)	444, 615
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	4 cut(s)	100, 308, 536, 560
BseLI	CCNNNNNNNGG	1 cut(s)	450
BseNI	ACTGG	2 cut(s)	444, 615
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	2 cut(s)	309, 540
Bsh1236I	CGCG	5 cut(s)	241, 243, 320, 457, 468
BshFI	GGCC	5 cut(s)	206, 315, 454, 535, 565
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	6 cut(s)	6, 45, 102, 110, 483, 560
BslI	CCNNNNNNNGG	1 cut(s)	450
BsmAI	GTCTC	3 cut(s)	181, 283, 445
BsmBI	CGTCTC	3 cut(s)	181, 283, 445
BsnI	GGCC	5 cut(s)	206, 315, 454, 535, 565
Bsp120I	GGGCCC	1 cut(s)	563
Bsp1286I	GDGCHC	2 cut(s)	109, 567
Bsp143I	GATC	3 cut(s)	255, 419, 435
BspANI	GGCC	5 cut(s)	206, 315, 454, 535, 565
BspFNI	CGCG	5 cut(s)	241, 243, 320, 457, 468
BspLI	GGNNCC	4 cut(s)	92, 314, 564, 565
BspMI	ACCTGC	2 cut(s)	152, 272
BspPI	GGATC	2 cut(s)	250, 414
BsrI	ACTGG	2 cut(s)	444, 615
BssECI	CCNNGG	4 cut(s)	100, 308, 536, 560
BssMI	GATC	3 cut(s)	255, 419, 435
BssSI	CACGAG	1 cut(s)	665
BssT1I	CCWWGG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	665
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	3 cut(s)	196, 409, 430
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	3 cut(s)	124, 213, 374
BstDEI	CTNAG	1 cut(s)	713
BstFNI	CGCG	5 cut(s)	241, 243, 320, 457, 468
BstHHI	GCGC	4 cut(s)	243, 322, 378, 465
BstKTI	GATC	3 cut(s)	258, 422, 438
BstMAI	GTCTC	3 cut(s)	181, 283, 445
BstMBI	GATC	3 cut(s)	255, 419, 435
BstMWI	GCNNNNNNNGC	8 cut(s)	93, 189, 212, 240, 362, 460, 532, 562
BstNI	CCWGG	1 cut(s)	537
BstSCI	CCNGG	3 cut(s)	100, 535, 559
BstSLI	GKGCMC	1 cut(s)	567
BstUI	CGCG	5 cut(s)	241, 243, 320, 457, 468
BstV1I	GCAGC	2 cut(s)	309, 540
BsuRI	GGCC	5 cut(s)	206, 315, 454, 535, 565
BtgZI	GCGATG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	608
BveI	ACCTGC	2 cut(s)	152, 272
Cac8I	GCNNGC	3 cut(s)	124, 213, 374
CfoI	GCGC	4 cut(s)	243, 322, 378, 465
Cfr13I	GGNCC	4 cut(s)	204, 313, 563, 564
CseI	GACGC	2 cut(s)	51, 457
Csp6I	GTAC	1 cut(s)	113
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	1 cut(s)	713
DpnI	GATC	3 cut(s)	257, 421, 437
DpnII	GATC	3 cut(s)	255, 419, 435
EaeI	YGGCCR	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	2 cut(s)	109, 567
Eco53kI	GAGCTC	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	107
EcoO109I	RGGNCCY	2 cut(s)	563, 564
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	2 cut(s)	109, 567
ErhI	CCWWGG	1 cut(s)	308
Esp3I	CGTCTC	3 cut(s)	181, 283, 445
FaiI	YATR	1 cut(s)	662
FauI	CCCGC	3 cut(s)	146, 167, 188
FblI	GTMKAC	2 cut(s)	411, 490
Fnu4HI	GCNGC	8 cut(s)	94, 120, 232, 323, 455, 466, 554, 557
FriOI	GRGCYC	2 cut(s)	109, 567
Fsp4HI	GCNGC	8 cut(s)	94, 120, 232, 323, 455, 466, 554, 557
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	4 cut(s)	242, 321, 377, 464
GluI	GCNGC	8 cut(s)	94, 120, 232, 323, 455, 466, 554, 557
GsuI	CTGGAG	2 cut(s)	109, 427
HaeIII	GGCC	5 cut(s)	206, 315, 454, 535, 565
HapII	CCGG	6 cut(s)	6, 45, 102, 110, 483, 560
HgaI	GACGC	2 cut(s)	51, 457
HhaI	GCGC	4 cut(s)	243, 322, 378, 465
Hin6I	GCGC	4 cut(s)	241, 320, 376, 463
HinP1I	GCGC	4 cut(s)	241, 320, 376, 463
HincII	GTYRAC	1 cut(s)	491
HindII	GTYRAC	1 cut(s)	491
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	6 cut(s)	6, 45, 102, 110, 483, 560
HphI	GGTGA	2 cut(s)	397, 512
Hpy166II	GTNNAC	3 cut(s)	115, 412, 491
Hpy188I	TCNGA	4 cut(s)	133, 154, 283, 337
Hpy188III	TCNNGA	4 cut(s)	259, 417, 433, 673
Hpy8I	GTNNAC	3 cut(s)	115, 412, 491
Hpy99I	CGWCG	7 cut(s)	41, 67, 395, 434, 495, 525, 531
HpyCH4III	ACNGT	3 cut(s)	196, 409, 430
HpyCH4V	TGCA	3 cut(s)	126, 147, 168
HpyF10VI	GCNNNNNNNGC	8 cut(s)	93, 189, 212, 240, 362, 460, 532, 562
HpyF3I	CTNAG	1 cut(s)	713
HspAI	GCGC	4 cut(s)	241, 320, 376, 463
Kzo9I	GATC	3 cut(s)	255, 419, 435
LmnI	GCTCC	4 cut(s)	90, 104, 112, 703
Lsp1109I	GCAGC	2 cut(s)	309, 540
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	2 cut(s)	394, 469
MalI	GATC	3 cut(s)	257, 421, 437
MboI	GATC	3 cut(s)	255, 419, 435
MboII	GAAGA	3 cut(s)	74, 597, 659
MhlI	GDGCHC	2 cut(s)	109, 567
MluCI	AATT	2 cut(s)	185, 621
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	2 cut(s)	156, 306
MseI	TTAA	1 cut(s)	624
MslI	CAYNNNNRTG	1 cut(s)	665
MspI	CCGG	6 cut(s)	6, 45, 102, 110, 483, 560
MspR9I	CCNGG	3 cut(s)	102, 537, 561
MvaI	CCWGG	1 cut(s)	537
MvnI	CGCG	5 cut(s)	241, 243, 320, 457, 468
MwoI	GCNNNNNNNGC	8 cut(s)	93, 189, 212, 240, 362, 460, 532, 562
NciI	CCSGG	2 cut(s)	102, 561
NdeII	GATC	3 cut(s)	255, 419, 435
NlaIV	GGNNCC	4 cut(s)	92, 314, 564, 565
NmuCI	GTSAC	2 cut(s)	394, 469
PaqCI	CACCTGC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	2 cut(s)	387, 526
PflMI	CCANNNNNTGG	1 cut(s)	450
PkrI	GCNGC	8 cut(s)	95, 121, 233, 324, 456, 467, 555, 558
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	4 cut(s)	92, 314, 564, 565
PspOMI	GGGCCC	1 cut(s)	563
PspPI	GGNCC	4 cut(s)	204, 313, 563, 564
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	665
SacI	GAGCTC	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	489
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	8 cut(s)	94, 120, 232, 323, 455, 466, 554, 557
Sau3AI	GATC	3 cut(s)	255, 419, 435
Sau96I	GGNCC	4 cut(s)	204, 313, 563, 564
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	3 cut(s)	102, 537, 561
SduI	GDGCHC	2 cut(s)	109, 567
SfaNI	GCATC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	665
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	2 cut(s)	185, 621
SspMI	CTAG	1 cut(s)	572
SstI	GAGCTC	1 cut(s)	109
StyD4I	CCNGG	3 cut(s)	100, 535, 559
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	3 cut(s)	196, 409, 430
TaqI	TCGA	5 cut(s)	36, 288, 432, 490, 520
TasI	AATT	2 cut(s)	185, 621
TauI	GCSGC	6 cut(s)	96, 122, 234, 457, 468, 559
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	1 cut(s)	615
TseFI	GTSAC	2 cut(s)	394, 469
TseI	GCWGC	2 cut(s)	322, 553
Tsp45I	GTSAC	2 cut(s)	394, 469
TspGWI	ACGGA	2 cut(s)	163, 265
TspRI	CASTG	1 cut(s)	615
Van91I	CCANNNNNTGG	1 cut(s)	450
XapI	RAATTY	1 cut(s)	185
XmiI	GTMKAC	2 cut(s)	411, 490
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.