Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009306

Physical Location & Seq

Genomic Coordinates Forward (+)

43454378 .. 43455658

Gene Structure 1281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50018

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGATTGATCGAAATCGCGAGGGGGTGTTGTAAGCTTGCAAAGTTTGAGGTGTATGGATGCAAGAAAATTACAGTGAAGGGGTTGAGGACGCTGGCTTGTTTGTTGAGGAAGACTTTAGTTGATGTGAGCATATCTTGCTGTAAGAACCTGGATGCTGCCGGCTCAGTCTGTGCTCTGGAGCCAATTCGCGATCGGATTCAGCGTCTGCACATAGATTGTGTCTGGCCACGGGACTTTGATCTCAATCAAGTCAATGATTATGATGTTGGTGATGATGAAAGTGTTGTGATGAGTCGGAATGGTAATGATGACATGGACCTGAAATGGAGTGATGAGTACGAGCACAGGATCAGCAAGAAGTGCAAGTATGGATCAGATGGGGACTGTTCCTATATGCCAACCAATGGCTACGCGAATGGAAATGGGTTTTGGAGTGATGAGACTTGGGAAAGGCTGCAGTACCTATCACTTTGGATTGAGGTGGGGGAGTTGCTGACATCATTGCCAGAGGTGGGTCTGGACGAGTGCCCCAATCTGGAGGAGATTCAGATCCGGGTGGAAGGCGATTGCAGGGGAAGGCACAAACCCACACAGCGAGAATTCGGGTTAAGCTGCCTATCCCGTTTTCCTCGGCTGTCAAAGATGAAGCTGGATTGTGGTGATACTGTGGGATTTGCACTGACTGCTCCACCAGGACAGATGGACTTGTCACTTTGGGAGAGGTTCTTCCTCTCTGGGATTGGAGAATTGAGTCTCAGCGAAGTCGATTATTGGCCACCTCAAGACCGGGATGTGAACCAGAGGAGTCTCTGGCTTCCAGCTGCCGGATTGCTGGCAGAATGCATCACACTCCGGAAGCTTTTCATCCATGGGACTGCTCACGAACATTTCATGATGTTCCTTGTGAGAAACCCAAACCTCAACCTCAGCTTAAGGGATGTGCAACTGAGAGAGGATTACTATCCAGCGCCCGAAAATGAAATGAGTACAGAGATGAGGGTGGACTCGTGCTGTCGCTTTGAAGATGCGCTGAACAGGCGCACAATCCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006810 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009653 GO:0009914 GO:0009926 GO:0009934 GO:0009987 GO:0010016 GO:0010029 GO:0010035 GO:0010187 GO:0010817 GO:0016567 GO:0019005 GO:0019538 GO:0022603 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042221 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048367 GO:0048509 GO:0048518 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0060918 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080134 GO:1900140 GO:1901564 GO:1901700 GO:1902494 GO:1902584 GO:1990234 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

352

Amino Acids

40.26

Weight (kDa)

5.02

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42620
fragaria_vesca	FvH4_2g05661 FvH4_2g12921 FvH4_4g05521 FvH4_6g27480
malus_domestica	MD09G1236800.v1.1 MD17G1266700.v1.1
prunus_persica	Prupe.3G117700_v2.0.a1
pyrus_communis	pycom09g15540
rosa_chinensis	RchiOBHm_Chr2g0128401 RchiOBHm_Chr2g0128411 RchiOBHm_Chr2g0129761
rosa_laevigata	RLG00000019101
rosa_multiflora	Rmu_ssc0000459.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114320
rosa_rugosa	Rorug02G0289700
rosa_samantha	Rh2AG340400 Rh2BG348700 Rh2BG348900 Rh2CG327800 Rh2DG367200
rosa_wichuraiana	Rw2G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccII	CGCG	3 cut(s)	20, 192, 416
AccIII	TCCGGA	1 cut(s)	855
AclWI	GGATC	3 cut(s)	359, 382, 547
AcoI	YGGCCR	2 cut(s)	227, 776
AcsI	RAATTY	1 cut(s)	602
AfaI	GTAC	3 cut(s)	341, 464, 991
AfiI	CCNNNNNNNGG	4 cut(s)	407, 515, 538, 827
AflII	CTTAAG	1 cut(s)	934
AgsI	TTSAA	1 cut(s)	1025
AjnI	CCWGG	2 cut(s)	150, 694
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	6 cut(s)	37, 615, 652, 824, 862, 933
AluI	AGCT	6 cut(s)	37, 615, 652, 824, 862, 933
Alw21I	GWGCWC	2 cut(s)	178, 348
Alw26I	GTCTC	3 cut(s)	437, 761, 815
AlwI	GGATC	3 cut(s)	359, 382, 547
AlwNI	CAGNNNCTG	1 cut(s)	208
Aor13HI	TCCGGA	1 cut(s)	855
AoxI	GGCC	2 cut(s)	227, 776
ApeKI	GCWGC	4 cut(s)	158, 457, 615, 824
ApoI	RAATTY	1 cut(s)	602
Asp700I	GAANNNNTTC	1 cut(s)	863
AspLEI	GCGC	3 cut(s)	973, 1033, 1044
AspS9I	GGNCC	1 cut(s)	319
AsuC2I	CCSGG	2 cut(s)	557, 791
AsuHPI	GGTGA	2 cut(s)	284, 674
AvaII	GGWCC	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	533
BalI	TGGCCA	2 cut(s)	229, 778
BauI	CACGAG	1 cut(s)	1009
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	2 cut(s)	178, 348
BbvCI	CCTCAGC	1 cut(s)	929
BbvI	GCAGC	4 cut(s)	145, 444, 602, 811
BccI	CCATC	2 cut(s)	374, 697
BciT130I	CCWGG	2 cut(s)	152, 696
BcnI	CCSGG	2 cut(s)	557, 791
BcoDI	GTCTC	3 cut(s)	437, 761, 815
BfmI	CTRYAG	1 cut(s)	458
BfoI	RGCGCY	1 cut(s)	974
BfrI	CTTAAG	1 cut(s)	934
BisI	GCNGC	4 cut(s)	159, 458, 616, 825
BlsI	GCNGC	4 cut(s)	160, 459, 617, 826
Bme1390I	CCNGG	4 cut(s)	152, 557, 696, 791
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	4 cut(s)	152, 557, 696, 791
BmsI	GCATC	4 cut(s)	50, 145, 855, 1018
BpiI	GAAGAC	1 cut(s)	119
BpmI	CTGGAG	2 cut(s)	200, 560
Bpu10I	CCTNAGC	1 cut(s)	929
BpuEI	CTTGAG	1 cut(s)	768
BpuMI	CCSGG	2 cut(s)	557, 791
BsaBI	GATNNNNATC	4 cut(s)	14, 246, 551, 963
BsaJI	CCNNGG	3 cut(s)	230, 632, 871
BsaWI	WCCGGW	1 cut(s)	855
Bsc4I	CCNNNNNNNGG	4 cut(s)	407, 515, 538, 827
Bse118I	RCCGGY	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	503
Bse8I	GATNNNNATC	4 cut(s)	14, 246, 551, 963
BseAI	TCCGGA	1 cut(s)	855
BseBI	CCWGG	2 cut(s)	152, 696
BseDI	CCNNGG	3 cut(s)	230, 632, 871
BseGI	GGATG	5 cut(s)	65, 160, 799, 867, 946
BseJI	GATNNNNATC	4 cut(s)	14, 246, 551, 963
BseLI	CCNNNNNNNGG	4 cut(s)	407, 515, 538, 827
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	4 cut(s)	180, 772, 941, 943
BseRI	GAGGAG	2 cut(s)	557, 820
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	4 cut(s)	145, 444, 602, 811
BsgI	GTGCAG	1 cut(s)	194
Bsh1236I	CGCG	3 cut(s)	20, 192, 416
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	229, 778
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	2 cut(s)	178, 348
BsiSI	CCGG	5 cut(s)	162, 556, 790, 828, 856
BslFI	GGGAC	3 cut(s)	248, 398, 889
BslI	CCNNNNNNNGG	4 cut(s)	407, 515, 538, 827
BsmAI	GTCTC	3 cut(s)	437, 761, 815
BsmFI	GGGAC	3 cut(s)	248, 398, 889
BsmI	GAATGC	1 cut(s)	848
BsnI	GGCC	2 cut(s)	229, 778
Bsp1286I	GDGCHC	3 cut(s)	178, 348, 533
Bsp13I	TCCGGA	1 cut(s)	855
Bsp143I	GATC	6 cut(s)	9, 193, 241, 351, 374, 552
Bsp19I	CCATGG	1 cut(s)	871
Bsp68I	TCGCGA	2 cut(s)	20, 192
BspANI	GGCC	2 cut(s)	229, 778
BspCNI	CTCAG	4 cut(s)	179, 771, 942, 942
BspEI	TCCGGA	1 cut(s)	855
BspFNI	CGCG	3 cut(s)	20, 192, 416
BspHI	TCATGA	1 cut(s)	894
BspLI	GGNNCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	462
BspPI	GGATC	3 cut(s)	359, 382, 547
BspTI	CTTAAG	1 cut(s)	934
BsrDI	GCAATG	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	3 cut(s)	230, 632, 871
BssMI	GATC	6 cut(s)	9, 193, 241, 351, 374, 552
BssSI	CACGAG	1 cut(s)	1009
BssT1I	CCWWGG	1 cut(s)	871
Bst2BI	CACGAG	1 cut(s)	1009
Bst2UI	CCWGG	2 cut(s)	152, 696
Bst4CI	ACNGT	3 cut(s)	76, 389, 670
BstAFI	CTTAAG	1 cut(s)	934
BstAPI	GCANNNNNTGC	3 cut(s)	138, 363, 686
BstC8I	GCNNGC	4 cut(s)	39, 96, 163, 837
BstDEI	CTNAG	4 cut(s)	166, 758, 929, 950
BstDSI	CCRYGG	2 cut(s)	230, 871
BstF5I	GGATG	5 cut(s)	65, 160, 799, 867, 946
BstFNI	CGCG	3 cut(s)	20, 192, 416
BstH2I	RGCGCY	1 cut(s)	974
BstHHI	GCGC	3 cut(s)	973, 1033, 1044
BstKTI	GATC	6 cut(s)	12, 196, 244, 354, 377, 555
BstMAI	GTCTC	3 cut(s)	437, 761, 815
BstMBI	GATC	6 cut(s)	9, 193, 241, 351, 374, 552
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 363, 686, 1039
BstNI	CCWGG	2 cut(s)	152, 696
BstSCI	CCNGG	4 cut(s)	150, 555, 694, 789
BstSFI	CTRYAG	1 cut(s)	458
BstSLI	GKGCMC	1 cut(s)	533
BstUI	CGCG	3 cut(s)	20, 192, 416
BstV1I	GCAGC	4 cut(s)	145, 444, 602, 811
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	552
BstYI	RGATCY	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	229, 778
BtgI	CCRYGG	2 cut(s)	230, 871
BtsCI	GGATG	5 cut(s)	65, 160, 799, 867, 946
BtsIMutI	CAGTG	2 cut(s)	81, 680
BtuMI	TCGCGA	2 cut(s)	20, 192
Cac8I	GCNNGC	4 cut(s)	39, 96, 163, 837
CaiI	CAGNNNCTG	1 cut(s)	208
CciI	TCATGA	1 cut(s)	894
CfoI	GCGC	3 cut(s)	973, 1033, 1044
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	319
CseI	GACGC	2 cut(s)	100, 194
Csp6I	GTAC	3 cut(s)	340, 463, 990
CviAII	CATG	3 cut(s)	316, 872, 895
CviQI	GTAC	3 cut(s)	340, 463, 990
DdeI	CTNAG	4 cut(s)	166, 758, 929, 950
DpnI	GATC	6 cut(s)	11, 195, 243, 353, 376, 554
DpnII	GATC	6 cut(s)	9, 193, 241, 351, 374, 552
EaeI	YGGCCR	2 cut(s)	227, 776
Eco130I	CCWWGG	1 cut(s)	871
Eco47I	GGWCC	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	150, 694
EcoT14I	CCWWGG	1 cut(s)	871
EcoT22I	ATGCAT	1 cut(s)	848
ErhI	CCWWGG	1 cut(s)	871
FaeI	CATG	3 cut(s)	319, 875, 898
FaqI	GGGAC	3 cut(s)	248, 398, 889
FatI	CATG	3 cut(s)	315, 871, 894
Fnu4HI	GCNGC	4 cut(s)	159, 458, 616, 825
FokI	GGATG	5 cut(s)	72, 167, 806, 854, 953
Fsp4HI	GCNGC	4 cut(s)	159, 458, 616, 825
GlaI	GCGC	3 cut(s)	972, 1032, 1043
GluI	GCNGC	4 cut(s)	159, 458, 616, 825
GsuI	CTGGAG	2 cut(s)	200, 560
HaeII	RGCGCY	1 cut(s)	974
HaeIII	GGCC	2 cut(s)	229, 778
HapII	CCGG	5 cut(s)	162, 556, 790, 828, 856
HgaI	GACGC	2 cut(s)	100, 194
HhaI	GCGC	3 cut(s)	973, 1033, 1044
Hin1II	CATG	3 cut(s)	319, 875, 898
Hin6I	GCGC	3 cut(s)	971, 1031, 1042
HinP1I	GCGC	3 cut(s)	971, 1031, 1042
HindIII	AAGCTT	2 cut(s)	35, 860
HinfI	GANTC	6 cut(s)	199, 295, 547, 754, 808, 1007
HpaII	CCGG	5 cut(s)	162, 556, 790, 828, 856
HphI	GGTGA	2 cut(s)	284, 674
Hpy166II	GTNNAC	2 cut(s)	799, 1006
Hpy188I	TCNGA	4 cut(s)	198, 300, 379, 552
Hpy188III	TCNNGA	9 cut(s)	19, 179, 191, 521, 539, 785, 856, 884, 895
Hpy8I	GTNNAC	2 cut(s)	799, 1006
HpyAV	CCTTC	3 cut(s)	73, 557, 573
HpyCH4III	ACNGT	3 cut(s)	76, 389, 670
HpyCH4V	TGCA	9 cut(s)	41, 63, 211, 366, 460, 573, 680, 846, 946
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 363, 686, 1039
HpyF3I	CTNAG	4 cut(s)	166, 758, 929, 950
Hsp92II	CATG	3 cut(s)	319, 875, 898
HspAI	GCGC	3 cut(s)	971, 1031, 1042
Kpn2I	TCCGGA	1 cut(s)	855
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Kzo9I	GATC	6 cut(s)	9, 193, 241, 351, 374, 552
LmnI	GCTCC	2 cut(s)	181, 694
Lsp1109I	GCAGC	4 cut(s)	145, 444, 602, 811
LweI	GCATC	4 cut(s)	50, 145, 855, 1018
MaeIII	GTNAC	1 cut(s)	711
MalI	GATC	6 cut(s)	11, 195, 243, 353, 376, 554
MboI	GATC	6 cut(s)	9, 193, 241, 351, 374, 552
MboII	GAAGA	3 cut(s)	124, 721, 1037
MflI	RGATCY	1 cut(s)	552
MhlI	GDGCHC	3 cut(s)	178, 348, 533
MlsI	TGGCCA	2 cut(s)	229, 778
MluCI	AATT	4 cut(s)	69, 186, 602, 749
MluNI	TGGCCA	2 cut(s)	229, 778
MlyI	GAGTC	4 cut(s)	304, 763, 817, 1001
MmeI	TCCRAC	1 cut(s)	278
Mox20I	TGGCCA	2 cut(s)	229, 778
Mph1103I	ATGCAT	1 cut(s)	848
MroI	TCCGGA	1 cut(s)	855
MroNI	GCCGGC	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	863
MscI	TGGCCA	2 cut(s)	229, 778
MseI	TTAA	2 cut(s)	611, 935
Msp20I	TGGCCA	2 cut(s)	229, 778
MspA1I	CMGCKG	1 cut(s)	824
MspCI	CTTAAG	1 cut(s)	934
MspI	CCGG	5 cut(s)	162, 556, 790, 828, 856
MspR9I	CCNGG	4 cut(s)	152, 557, 696, 791
Mva1269I	GAATGC	1 cut(s)	848
MvaI	CCWGG	2 cut(s)	152, 696
MvnI	CGCG	3 cut(s)	20, 192, 416
MwoI	GCNNNNNNNGC	4 cut(s)	138, 363, 686, 1039
NaeI	GCCGGC	1 cut(s)	163
NciI	CCSGG	2 cut(s)	557, 791
NcoI	CCATGG	1 cut(s)	871
NdeII	GATC	6 cut(s)	9, 193, 241, 351, 374, 552
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	319, 875, 898
NlaIV	GGNNCC	1 cut(s)	183
NmeAIII	GCCGAG	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	711
NruI	TCGCGA	2 cut(s)	20, 192
NsiI	ATGCAT	1 cut(s)	848
PagI	TCATGA	1 cut(s)	894
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PctI	GAATGC	1 cut(s)	848
PdiI	GCCGGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	863
PfeI	GAWTC	2 cut(s)	199, 547
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	4 cut(s)	160, 459, 617, 826
Ple19I	CGATCG	1 cut(s)	196
PleI	GAGTC	4 cut(s)	303, 762, 816, 1001
PpsI	GAGTC	4 cut(s)	303, 762, 816, 1001
Psp6I	CCWGG	2 cut(s)	150, 694
PspGI	CCWGG	2 cut(s)	150, 694
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	319
PstI	CTGCAG	1 cut(s)	462
PstNI	CAGNNNCTG	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	552
PvuI	CGATCG	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	824
RruI	TCGCGA	2 cut(s)	20, 192
RsaI	GTAC	3 cut(s)	341, 464, 991
RsaNI	GTAC	3 cut(s)	340, 463, 990
SaqAI	TTAA	2 cut(s)	611, 935
SatI	GCNGC	4 cut(s)	159, 458, 616, 825
Sau3AI	GATC	6 cut(s)	9, 193, 241, 351, 374, 552
Sau96I	GGNCC	1 cut(s)	319
SchI	GAGTC	4 cut(s)	304, 763, 817, 1001
ScrFI	CCNGG	4 cut(s)	152, 557, 696, 791
SduI	GDGCHC	3 cut(s)	178, 348, 533
SfaNI	GCATC	4 cut(s)	50, 145, 855, 1018
SfcI	CTRYAG	1 cut(s)	458
SinI	GGWCC	1 cut(s)	319
SmlI	CTYRAG	2 cut(s)	783, 934
SmoI	CTYRAG	2 cut(s)	783, 934
Sse9I	AATT	4 cut(s)	69, 186, 602, 749
StyD4I	CCNGG	4 cut(s)	150, 555, 694, 789
StyI	CCWWGG	1 cut(s)	871
TaaI	ACNGT	3 cut(s)	76, 389, 670
TaqI	TCGA	2 cut(s)	12, 768
TasI	AATT	4 cut(s)	69, 186, 602, 749
TatI	WGTACW	1 cut(s)	989
TfiI	GAWTC	2 cut(s)	199, 547
Tru1I	TTAA	2 cut(s)	611, 935
Tru9I	TTAA	2 cut(s)	611, 935
TscAI	CASTG	2 cut(s)	81, 687
TseFI	GTSAC	1 cut(s)	711
TseI	GCWGC	4 cut(s)	158, 457, 615, 824
Tsp45I	GTSAC	1 cut(s)	711
TspDTI	ATGAA	5 cut(s)	294, 662, 856, 883, 996
TspRI	CASTG	2 cut(s)	81, 687
Van91I	CCANNNNNTGG	1 cut(s)	407
Vha464I	CTTAAG	1 cut(s)	934
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	863
Zsp2I	ATGCAT	1 cut(s)	848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.