Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009306

Physical Location & Seq

Genomic Coordinates Forward (+)

47158271 .. 47163286

Gene Structure 5016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG348700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTTGTTCGGGCGCGACGGGTATGGCAGGGGCAAGGCTTGGAAGGTATAGGAACAACGACTTCACCTATCAAGAAACCTAAGCACGAACTACGACGACAGTCGTCGGTGGTGGTCTCTAGGGTTTTGGCCCCTGTACCGTCAATTTTTCCGAGGCTCTCCACAGTACATAGCACCTTCCATGAGATACATAGGGATCGTCGGGGAGGAGGCTCTCTTGGCCATATCGACCAATTGTCCGGAGCTCAGAGTCGTCCATCTCATCGATACGTCGTCCTTGGCCAACGCGCGTGGGGATCCAAACGACGACGGCTTCACATCGGAGGACGCTCAGATTGGGCGGGCGGCTTTGATCGACTTCTTCTCCGGGCTTCCTTTGCTGGAAGAGCTGGTGCTAGATGTGTGCAAGAACGTGAGGGACAGTGGATTGGCCTTGGAGGTTCTTGCTTCCAAGTGTCCCAGACTGAGAGCTCTCAAGCTTGGCCAGTTCCATGGGCTGTGCTCGGCGGTTGGGTCCCAGCTCGACGGCATTGCTCTGTGTCATGGGCTGGAGTCACTGTCGATCAAGAACTCTGCGGATTTGACAGATATGGGATTGATCGAAATCGCGAGGGGGTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.95

Weight (kDa)

11.38

Isoelectric Point (pI)

62.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42620
fragaria_vesca	FvH4_2g05661 FvH4_2g12921 FvH4_4g05521 FvH4_6g27480
malus_domestica	MD09G1236800.v1.1 MD17G1266700.v1.1
prunus_persica	Prupe.3G117700_v2.0.a1
pyrus_communis	pycom09g15540
rosa_chinensis	RchiOBHm_Chr2g0128401 RchiOBHm_Chr2g0128411 RchiOBHm_Chr2g0129761
rosa_laevigata	RLG00000019101
rosa_multiflora	Rmu_ssc0000459.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114320
rosa_rugosa	Rorug02G0289700
rosa_samantha	Rh2AG340400 Rh2BG348700 Rh2BG348900 Rh2CG327800 Rh2DG367200
rosa_wichuraiana	Rw2G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	16, 288, 290, 609
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	4 cut(s)	341, 345, 507, 576
AclWI	GGATC	3 cut(s)	204, 291, 304
AcoI	YGGCCR	3 cut(s)	220, 280, 482
AfaI	GTAC	2 cut(s)	138, 168
AhdI	GACNNNNNGTC	1 cut(s)	235
AluBI	AGCT	5 cut(s)	245, 389, 471, 479, 521
AluI	AGCT	5 cut(s)	245, 389, 471, 479, 521
Alw21I	GWGCWC	3 cut(s)	247, 473, 504
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	3 cut(s)	204, 291, 304
Aor13HI	TCCGGA	1 cut(s)	239
AoxI	GGCC	5 cut(s)	129, 220, 280, 430, 482
AspLEI	GCGC	2 cut(s)	16, 290
AspS9I	GGNCC	2 cut(s)	130, 514
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	514
BalI	TGGCCA	3 cut(s)	222, 282, 484
BamHI	GGATCC	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	247, 473
Bbv12I	GWGCWC	3 cut(s)	247, 473, 504
BccI	CCATC	1 cut(s)	265
BceAI	ACGGC	2 cut(s)	326, 542
BcgI	CGANNNNNNTGC	2 cut(s)	513, 547
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	2 cut(s)	120, 396
BisI	GCNGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	514
BmeRI	GACNNNNNGTC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	130, 514
BmiI	GGNNCC	4 cut(s)	132, 298, 515, 516
BmrFI	CCNGG	1 cut(s)	368
BoxI	GACNNNNGTC	2 cut(s)	100, 103
BpmI	CTGGAG	1 cut(s)	570
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	459
BpuMI	CCSGG	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	265
BsaBI	GATNNNNATC	1 cut(s)	603
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	4 cut(s)	152, 277, 433, 491
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	4 cut(s)	348, 378, 543, 573
Bse1I	ACTGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	529
Bse8I	GATNNNNATC	1 cut(s)	603
BseAI	TCCGGA	1 cut(s)	239
BseCI	ATCGAT	1 cut(s)	265
BseDI	CCNNGG	4 cut(s)	152, 277, 433, 491
BseJI	GATNNNNATC	1 cut(s)	603
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	3 cut(s)	260, 345, 456
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	1 cut(s)	222
BseYI	CCCAGC	1 cut(s)	517
Bsh1236I	CGCG	4 cut(s)	16, 288, 290, 609
BshFI	GGCC	5 cut(s)	131, 222, 282, 432, 484
BshVI	ATCGAT	1 cut(s)	265
BsiHKAI	GWGCWC	3 cut(s)	247, 473, 504
BsiSI	CCGG	2 cut(s)	240, 367
BslFI	GGGAC	3 cut(s)	432, 442, 500
BsmAI	GTCTC	1 cut(s)	121
BsmFI	GGGAC	3 cut(s)	432, 442, 500
BsnI	GGCC	5 cut(s)	131, 222, 282, 432, 484
Bso31I	GGTCTC	1 cut(s)	121
Bsp1286I	GDGCHC	3 cut(s)	247, 473, 504
Bsp13I	TCCGGA	1 cut(s)	239
Bsp143I	GATC	5 cut(s)	196, 296, 352, 562, 598
Bsp19I	CCATGG	1 cut(s)	491
Bsp68I	TCGCGA	1 cut(s)	609
BspACI	CCGC	4 cut(s)	341, 345, 507, 576
BspANI	GGCC	5 cut(s)	131, 222, 282, 432, 484
BspCNI	CTCAG	3 cut(s)	259, 344, 457
BspDI	ATCGAT	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	239
BspFNI	CGCG	4 cut(s)	16, 288, 290, 609
BspLI	GGNNCC	4 cut(s)	132, 298, 515, 516
BspPI	GGATC	3 cut(s)	204, 291, 304
BspQI	GCTCTTC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	4 cut(s)	152, 277, 433, 491
BssMI	GATC	5 cut(s)	196, 296, 352, 562, 598
BssT1I	CCWWGG	3 cut(s)	277, 433, 491
Bst4CI	ACNGT	5 cut(s)	102, 141, 166, 423, 559
Bst6I	CTCTTC	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	4 cut(s)	81, 246, 331, 465
BstDSI	CCRYGG	1 cut(s)	491
BstFNI	CGCG	4 cut(s)	16, 288, 290, 609
BstHHI	GCGC	2 cut(s)	16, 290
BstKTI	GATC	5 cut(s)	199, 299, 355, 565, 601
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	5 cut(s)	196, 296, 352, 562, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 377, 386
BstPAI	GACNNNNGTC	2 cut(s)	100, 103
BstSCI	CCNGG	1 cut(s)	366
BstUI	CGCG	4 cut(s)	16, 288, 290, 609
BstX2I	RGATCY	1 cut(s)	296
BstXI	CCANNNNNNTGG	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	265
BsuRI	GGCC	5 cut(s)	131, 222, 282, 432, 484
BsuTUI	ATCGAT	1 cut(s)	265
BtgI	CCRYGG	1 cut(s)	491
BtsIMutI	CAGTG	2 cut(s)	428, 555
BtuMI	TCGCGA	1 cut(s)	609
Cac8I	GCNNGC	1 cut(s)	343
CfoI	GCGC	2 cut(s)	16, 290
Cfr13I	GGNCC	2 cut(s)	130, 514
ClaI	ATCGAT	1 cut(s)	265
CseI	GACGC	1 cut(s)	336
Csp6I	GTAC	2 cut(s)	137, 167
CspCI	CAANNNNNGTGG	2 cut(s)	272, 307
CviAII	CATG	3 cut(s)	182, 492, 543
CviQI	GTAC	2 cut(s)	137, 167
DdeI	CTNAG	4 cut(s)	81, 246, 331, 465
DpnI	GATC	5 cut(s)	198, 298, 354, 564, 600
DpnII	GATC	5 cut(s)	196, 296, 352, 562, 598
DriI	GACNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	3 cut(s)	220, 280, 482
Eam1104I	CTCTTC	1 cut(s)	379
Eam1105I	GACNNNNNGTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	379
Ecl136II	GAGCTC	2 cut(s)	245, 471
Eco130I	CCWWGG	3 cut(s)	277, 433, 491
Eco24I	GRGCYC	2 cut(s)	247, 473
Eco31I	GGTCTC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	514
Eco53kI	GAGCTC	2 cut(s)	245, 471
EcoICRI	GAGCTC	2 cut(s)	245, 471
EcoO109I	RGGNCCY	1 cut(s)	514
EcoT14I	CCWWGG	3 cut(s)	277, 433, 491
EcoT38I	GRGCYC	2 cut(s)	247, 473
ErhI	CCWWGG	3 cut(s)	277, 433, 491
FaeI	CATG	3 cut(s)	185, 495, 546
FaiI	YATR	9 cut(s)	25, 50, 171, 183, 192, 225, 493, 544, 591
FaqI	GGGAC	3 cut(s)	432, 442, 500
FatI	CATG	3 cut(s)	181, 491, 542
FauI	CCCGC	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	346
FriOI	GRGCYC	2 cut(s)	247, 473
Fsp4HI	GCNGC	1 cut(s)	346
FspBI	CTAG	2 cut(s)	120, 396
GlaI	GCGC	2 cut(s)	15, 289
GluI	GCNGC	1 cut(s)	346
GsaI	CCCAGC	1 cut(s)	521
GsuI	CTGGAG	1 cut(s)	570
HaeIII	GGCC	5 cut(s)	131, 222, 282, 432, 484
HapII	CCGG	2 cut(s)	240, 367
HgaI	GACGC	1 cut(s)	336
HhaI	GCGC	2 cut(s)	16, 290
Hin1II	CATG	3 cut(s)	185, 495, 546
Hin6I	GCGC	2 cut(s)	14, 288
HinP1I	GCGC	2 cut(s)	14, 288
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	2 cut(s)	250, 552
HpaII	CCGG	2 cut(s)	240, 367
HphI	GGTGA	1 cut(s)	57
Hpy188I	TCNGA	4 cut(s)	153, 249, 323, 334
Hpy188III	TCNNGA	4 cut(s)	73, 240, 566, 608
Hpy99I	CGWCG	8 cut(s)	21, 99, 109, 204, 275, 309, 312, 528
HpyAV	CCTTC	2 cut(s)	38, 187
HpyCH4III	ACNGT	5 cut(s)	102, 141, 166, 423, 559
HpyCH4IV	ACGT	2 cut(s)	270, 412
HpyCH4V	TGCA	1 cut(s)	406
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 377, 386
HpyF3I	CTNAG	4 cut(s)	81, 246, 331, 465
HpySE526I	ACGT	2 cut(s)	270, 412
Hsp92II	CATG	3 cut(s)	185, 495, 546
HspAI	GCGC	2 cut(s)	14, 288
KflI	GGGWCCC	1 cut(s)	514
Kpn2I	TCCGGA	1 cut(s)	239
Kzo9I	GATC	5 cut(s)	196, 296, 352, 562, 598
LguI	GCTCTTC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	242
MaeI	CTAG	2 cut(s)	120, 396
MaeII	ACGT	2 cut(s)	270, 412
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	5 cut(s)	198, 298, 354, 564, 600
MboI	GATC	5 cut(s)	196, 296, 352, 562, 598
MboII	GAAGA	2 cut(s)	353, 396
MfeI	CAATTG	1 cut(s)	233
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	3 cut(s)	247, 473, 504
MlsI	TGGCCA	3 cut(s)	222, 282, 484
MluCI	AATT	2 cut(s)	144, 233
MluNI	TGGCCA	3 cut(s)	222, 282, 484
MlyI	GAGTC	2 cut(s)	259, 561
MnlI	CCTC	7 cut(s)	147, 200, 203, 317, 409, 431, 604
Mox20I	TGGCCA	3 cut(s)	222, 282, 484
MroI	TCCGGA	1 cut(s)	239
MscI	TGGCCA	3 cut(s)	222, 282, 484
Msp20I	TGGCCA	3 cut(s)	222, 282, 484
MspI	CCGG	2 cut(s)	240, 367
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	233
MvnI	CGCG	4 cut(s)	16, 288, 290, 609
MwoI	GCNNNNNNNGC	3 cut(s)	219, 377, 386
NciI	CCSGG	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	491
NdeII	GATC	5 cut(s)	196, 296, 352, 562, 598
NlaIII	CATG	3 cut(s)	185, 495, 546
NlaIV	GGNNCC	4 cut(s)	132, 298, 515, 516
NmeAIII	GCCGAG	1 cut(s)	483
NmuCI	GTSAC	1 cut(s)	553
NruI	TCGCGA	1 cut(s)	609
PciSI	GCTCTTC	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	347
PleI	GAGTC	2 cut(s)	258, 560
PpsI	GAGTC	2 cut(s)	258, 560
PpuMI	RGGWCCY	1 cut(s)	514
PshAI	GACNNNNGTC	2 cut(s)	100, 103
Psp124BI	GAGCTC	2 cut(s)	247, 473
Psp5II	RGGWCCY	1 cut(s)	514
PspFI	CCCAGC	1 cut(s)	517
PspN4I	GGNNCC	4 cut(s)	132, 298, 515, 516
PspPI	GGNCC	2 cut(s)	130, 514
PspPPI	RGGWCCY	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	296
RruI	TCGCGA	1 cut(s)	609
RsaI	GTAC	2 cut(s)	138, 168
RsaNI	GTAC	2 cut(s)	137, 167
SacI	GAGCTC	2 cut(s)	247, 473
SapI	GCTCTTC	1 cut(s)	379
SatI	GCNGC	1 cut(s)	346
Sau3AI	GATC	5 cut(s)	196, 296, 352, 562, 598
Sau96I	GGNCC	2 cut(s)	130, 514
SchI	GAGTC	2 cut(s)	259, 561
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	3 cut(s)	247, 473, 504
SinI	GGWCC	1 cut(s)	514
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
Sse9I	AATT	2 cut(s)	144, 233
SsiI	CCGC	4 cut(s)	341, 345, 507, 576
SspMI	CTAG	2 cut(s)	120, 396
SstI	GAGCTC	2 cut(s)	247, 473
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	3 cut(s)	277, 433, 491
TaaI	ACNGT	5 cut(s)	102, 141, 166, 423, 559
TaiI	ACGT	2 cut(s)	273, 415
TaqI	TCGA	6 cut(s)	228, 265, 355, 523, 561, 601
TasI	AATT	2 cut(s)	144, 233
TatI	WGTACW	1 cut(s)	166
TauI	GCSGC	1 cut(s)	348
TscAI	CASTG	2 cut(s)	428, 562
TseFI	GTSAC	1 cut(s)	553
Tsp45I	GTSAC	1 cut(s)	553
TspRI	CASTG	2 cut(s)	428, 562
VpaK11BI	GGWCC	1 cut(s)	514
XspI	CTAG	2 cut(s)	120, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.