Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009306

Physical Location & Seq

Genomic Coordinates Reverse (-)

40266578 .. 40268743

Gene Structure 2166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2166 bp

ATGAGCGCCGCCGCCGCCGCTGCCGCTTCTCCGATGACTGACCTGCCGGAGGCGATTCTCGCCACCATCATCGGCTTGGTCTCCGACACCCGCTCCCGCAACTCAGTGGCCCTCGTCTGCCGCAAATTCCTCAGCCTCGAGAGAGCCACGCGCATCTCCCTCACGCTGCGGGGCAACGCGCGCGACCTCCACCTGATCCCGACCTGCTTCACCTCCGTCTCCGACCTCGACCTCTCCCTCCTCTCGCCGTGGGGCCACTCGCTGCTCTCCCCCTCCGCCTCCTCCACCGACCCCACCCTCCTCGCCCACCGCCTCCGCGTCGCCTTCCCCTCCGTCACCTCCCTTACGGTCTACTCCCGATCCTCCTCCACCGTCCAGATTGTCGCCAATCTCTGGCCGGGACTCCGCCGCGTCAAGCTCGTCCGGTGGCATCAACGGCCGCAGTCGCCTCTCGGAGCCGACTTCGATCCTCTCTTCCAGCAATGCCAGACTCTGTCCGATTTGGACTTGTCGGAATTCTACTACTGGACCGAGGACCTCCCTCCGGTTCTGGAAGCCCATCCCAACGTGGGCCGCTCTCTCACGAAGCTCAATCTCCTGACGGCGTCGTTTACCCATGGTTTCAGAGCCAACGAGATCCGATCCATCACCGAGGCCTGCCCCAAGCTTCAGCAGCTCTTCGTCGCTTGTATGTTCGATCCCAGATACATAGGGTTCGTCGGGGAGGAGGCTCTCTTGGCCATATCGACCAATTGTCGGGAGCTCAGAGTCGTCCATCTCATCGATACGACGTCGTTGGCCAACGCGCGTGGGGATCCAAACGACGACGGTTTCACATCGGAGGACGCTCAGATTGGGCGGGCGGCTTTGATCGACTTCTTCTCCGGGCTTCCTTTGCTGGAAGAGCTGGTGCTAGATGTGTGTAAGAACGTGAGGGACAGTGGGCTGGCCTTGGAGGTTCTTGCTTCCAAGTGTCCCAGACTGAGAGCTCTCAAGCTTGGCCAGTTCCATGGGCTGTGCTTGGCGGTTGGGTCCCAGCTCGACGGCATTGCTCGGTGTCAGGGGCTGGAGTCACTGTCGATTAAGAACTCTGCGGATTTGACAGATATGAGGTTGATCGAAATCGCGAGGGGGTGTTGTAAGCTTGCAAAGTTTGAGGTGTATGGATGCAAGAAAATTACAGTGAAGGGGTTGAGGACGCTGGCTTGTTTGTTGAGGAAGACTTTAGTTGATGTGAGCATATCTTGCTGTAAGAACCTGGATGCTGCCGGCTCAGTGTGTGCTCTGGAGCCAATTCGCGATCGGATTCAACGTCTGCACATAGATTGTGTCTGGCCACGGGACTTCGATCTCAATCAAGTCAATGATTATGACGTTGGTGATGATGAAAGTGTTGTGATGAGTCGGAGTGGTAATGATGACATGGACCTGAAATGGAGTGATGAGTACGAGCACAGGATCAGCAAGAAGTGCAAGTATGGATCAGATGGGGACTGTTCCTATATGCCAACCAATGGCCATGGTGATGGAAATGGGTTTTGGAGTGATGAGACTTGGGAAAGGCTGCACTACCTATCACTTTGGATTGAGGTGGGGGAGTTGCTGACATCATTGCCAGAGGTGGGTCTGGACGAGTGCCCCAATCTGGAGGAGATTCAGATCCGGGTCGAAGGCGATTGCAGGGGAAGGCACAAGCCCACACAGCGAGAATTCGGGTTGAGCTGCCTATCCCGTTTTCCTCGGCTGTCAAAGATGAAGCTGGATTGTGGTGATACTGTGGGATTTGCACTGACTGCTCCACCAGGACAGATGGACTTGTCACTTTGGGAGAGGTTCTTCCTCTCTGGGATTGGAGACTTGAGTCTCAGCGAAGTCGATTATTGGCCACCTCAAGACCGGGATGTGAACCAGAGGAGTCTCTGGCTTCCAGCTGCCGGATTGCTGGCAGAATGCATCACACTCCGGAAGCTTTTCATCCATGGGACGGCTCACGAACATTTCATGATGTTCCTTGTGAGAAACCCAAACCTCAACCTCAGCTTAAGGGATGTGCAGCTGAGAGAGGATTACTATCCAGCGCCCGAAAATGAAATGAGTACAGAGATGAGGGTGGACTCGTGCTGTCGCTTTGAAGATGCGCTGAACAGGCGCCCAATCCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006810 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009653 GO:0009914 GO:0009926 GO:0009934 GO:0009987 GO:0010016 GO:0010029 GO:0010035 GO:0010187 GO:0010817 GO:0016567 GO:0019005 GO:0019538 GO:0022603 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042221 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048367 GO:0048509 GO:0048518 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0060918 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080134 GO:1900140 GO:1901564 GO:1901700 GO:1902494 GO:1902584 GO:1990234 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

721

Amino Acids

80.48

Weight (kDa)

5.46

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	14 - 51	3.3e-07	F-box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42620
fragaria_vesca	FvH4_2g05661 FvH4_2g12921 FvH4_4g05521 FvH4_6g27480
malus_domestica	MD09G1236800.v1.1 MD17G1266700.v1.1
prunus_persica	Prupe.3G117700_v2.0.a1
pyrus_communis	pycom09g15540
rosa_chinensis	RchiOBHm_Chr2g0128401 RchiOBHm_Chr2g0128411 RchiOBHm_Chr2g0129761
rosa_laevigata	RLG00000019101
rosa_multiflora	Rmu_ssc0000459.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114320
rosa_rugosa	Rorug02G0289700
rosa_samantha	Rh2AG340400 Rh2BG348700 Rh2BG348900 Rh2CG327800 Rh2DG367200
rosa_wichuraiana	Rw2G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	794
Acc36I	ACCTGC	2 cut(s)	51, 212
AccB1I	GGYRCC	1 cut(s)	2148
AccB7I	CCANNNNNTGG	2 cut(s)	393, 1514
AccBSI	CCGCTC	2 cut(s)	93, 576
AccI	GTMKAC	1 cut(s)	351
AccIII	TCCGGA	1 cut(s)	1962
AcoI	YGGCCR	8 cut(s)	395, 437, 738, 798, 1000, 1334, 1516, 1883
AcsI	RAATTY	3 cut(s)	125, 515, 1709
AcuI	CTGAAG	1 cut(s)	653
AcyI	GRCGYC	3 cut(s)	605, 791, 2149
AfaI	GTAC	2 cut(s)	1448, 2098
AflII	CTTAAG	1 cut(s)	2041
AgsI	TTSAA	2 cut(s)	1310, 2132
AhdI	GACNNNNNGTC	1 cut(s)	753
AjnI	CCWGG	2 cut(s)	1257, 1801
AjuI	GAANNNNNNNTTGG	2 cut(s)	1522, 1554
Alw21I	GWGCWC	4 cut(s)	765, 991, 1285, 1455
Alw26I	GTCTC	6 cut(s)	85, 223, 1544, 1848, 1868, 1922
AlwNI	CAGNNNCTG	2 cut(s)	493, 1066
Ama87I	CYCGRG	1 cut(s)	137
Aor13HI	TCCGGA	1 cut(s)	1962
ApeKI	GCWGC	9 cut(s)	20, 166, 262, 673, 1265, 1564, 1722, 1931, 2053
ApoI	RAATTY	3 cut(s)	125, 515, 1709
Asp700I	GAANNNNTTC	1 cut(s)	1970
AspLEI	GCGC	8 cut(s)	8, 153, 181, 183, 808, 2080, 2140, 2151
AspS9I	GGNCC	7 cut(s)	109, 253, 528, 535, 571, 1032, 1426
AsuC2I	CCSGG	4 cut(s)	399, 886, 1664, 1898
AsuHPI	GGTGA	6 cut(s)	202, 328, 640, 1391, 1535, 1781
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	4 cut(s)	528, 535, 1032, 1426
BaeGI	GKGCMC	1 cut(s)	1640
BalI	TGGCCA	6 cut(s)	740, 800, 1002, 1336, 1518, 1885
BamHI	GGATCC	1 cut(s)	814
BanI	GGYRCC	1 cut(s)	2148
BanII	GRGCYC	2 cut(s)	765, 991
BauI	CACGAG	1 cut(s)	2116
BbsI	GAAGAC	1 cut(s)	1226
Bbv12I	GWGCWC	4 cut(s)	765, 991, 1285, 1455
BbvCI	CCTCAGC	2 cut(s)	131, 2036
BbvI	GCAGC	9 cut(s)	7, 153, 249, 685, 1252, 1551, 1709, 1918, 2065
BccI	CCATC	7 cut(s)	74, 567, 653, 783, 1481, 1520, 1804
BceAI	ACGGC	5 cut(s)	232, 452, 618, 1060, 2001
BcgI	CGANNNNNNTGC	2 cut(s)	1031, 1065
BciT130I	CCWGG	2 cut(s)	1259, 1803
BcnI	CCSGG	4 cut(s)	399, 886, 1664, 1898
BcoDI	GTCTC	6 cut(s)	85, 223, 1544, 1848, 1868, 1922
BfaI	CTAG	1 cut(s)	914
BfoI	RGCGCY	3 cut(s)	9, 2081, 2152
BfrI	CTTAAG	1 cut(s)	2041
BfuAI	ACCTGC	2 cut(s)	51, 212
Bme1390I	CCNGG	6 cut(s)	399, 886, 1259, 1664, 1803, 1898
Bme18I	GGWCC	4 cut(s)	528, 535, 1032, 1426
BmeRI	GACNNNNNGTC	1 cut(s)	753
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	7 cut(s)	109, 253, 528, 535, 571, 1032, 1426
BmiI	GGNNCC	7 cut(s)	254, 457, 816, 1033, 1034, 1290, 2150
BmrFI	CCNGG	6 cut(s)	399, 886, 1259, 1664, 1803, 1898
BmsI	GCATC	6 cut(s)	162, 439, 1157, 1252, 1962, 2125
BoxI	GACNNNNGTC	1 cut(s)	1860
BpiI	GAAGAC	1 cut(s)	1226
BpmI	CTGGAG	3 cut(s)	1088, 1307, 1667
Bpu10I	CCTNAGC	2 cut(s)	131, 2036
BpuEI	CTTGAG	3 cut(s)	977, 1875, 1879
BpuMI	CCSGG	4 cut(s)	399, 886, 1664, 1898
Bsa29I	ATCGAT	1 cut(s)	783
BsaBI	GATNNNNATC	4 cut(s)	1121, 1353, 1658, 2070
BsaHI	GRCGYC	3 cut(s)	605, 791, 2149
BsaI	GGTCTC	1 cut(s)	85
BsaWI	WCCGGW	3 cut(s)	423, 544, 1962
BsaXI	ACNNNNNCTCC	6 cut(s)	77, 107, 866, 896, 1061, 1091
Bse118I	RCCGGY	1 cut(s)	1268
Bse1I	ACTGG	2 cut(s)	530, 1003
Bse3DI	GCAATG	3 cut(s)	488, 1047, 1610
Bse8I	GATNNNNATC	4 cut(s)	1121, 1353, 1658, 2070
BseAI	TCCGGA	1 cut(s)	1962
BseBI	CCWGG	2 cut(s)	1259, 1803
BseCI	ATCGAT	1 cut(s)	783
BseGI	GGATG	6 cut(s)	559, 1172, 1267, 1906, 1974, 2053
BseJI	GATNNNNATC	4 cut(s)	1121, 1353, 1658, 2070
BseMI	GCAATG	3 cut(s)	488, 1047, 1610
BseMII	CTCAG	9 cut(s)	117, 145, 778, 863, 974, 1287, 1879, 2048, 2050
BseNI	ACTGG	2 cut(s)	530, 1003
BsePI	GCGCGC	1 cut(s)	179
BseRI	GAGGAG	7 cut(s)	230, 271, 290, 355, 740, 1664, 1927
BseSI	GKGCMC	1 cut(s)	1640
BseX3I	CGGCCG	1 cut(s)	437
BseXI	GCAGC	9 cut(s)	7, 153, 249, 685, 1252, 1551, 1709, 1918, 2065
BseYI	CCCAGC	1 cut(s)	1035
BsgI	GTGCAG	3 cut(s)	1301, 1550, 2072
Bsh1285I	CGRYCG	2 cut(s)	440, 1303
BshNI	GGYRCC	1 cut(s)	2148
BshVI	ATCGAT	1 cut(s)	783
BsiEI	CGRYCG	2 cut(s)	440, 1303
BsiHKAI	GWGCWC	4 cut(s)	765, 991, 1285, 1455
BsiHKCI	CYCGRG	1 cut(s)	137
BslFI	GGGAC	7 cut(s)	414, 950, 960, 1018, 1355, 1505, 1996
BsmAI	GTCTC	6 cut(s)	85, 223, 1544, 1848, 1868, 1922
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	7 cut(s)	414, 950, 960, 1018, 1355, 1505, 1996
BsmI	GAATGC	1 cut(s)	1955
Bso31I	GGTCTC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	5 cut(s)	765, 991, 1285, 1455, 1640
Bsp13I	TCCGGA	1 cut(s)	1962
Bsp19I	CCATGG	4 cut(s)	616, 1009, 1519, 1978
Bsp68I	TCGCGA	2 cut(s)	1127, 1299
BspCNI	CTCAG	9 cut(s)	116, 144, 777, 862, 975, 1286, 1878, 2049, 2049
BspDI	ATCGAT	1 cut(s)	783
BspEI	TCCGGA	1 cut(s)	1962
BspHI	TCATGA	1 cut(s)	2001
BspLI	GGNNCC	7 cut(s)	254, 457, 816, 1033, 1034, 1290, 2150
BspMI	ACCTGC	2 cut(s)	51, 212
BspQI	GCTCTTC	2 cut(s)	683, 897
BspT107I	GGYRCC	1 cut(s)	2148
BspTI	CTTAAG	1 cut(s)	2041
BspTNI	GGTCTC	1 cut(s)	85
BsrBI	CCGCTC	2 cut(s)	93, 576
BsrDI	GCAATG	3 cut(s)	488, 1047, 1610
BsrFI	RCCGGY	1 cut(s)	1268
BsrI	ACTGG	2 cut(s)	530, 1003
BssAI	RCCGGY	1 cut(s)	1268
BssHII	GCGCGC	1 cut(s)	179
BssNI	GRCGYC	3 cut(s)	605, 791, 2149
BssSI	CACGAG	1 cut(s)	2116
BssT1I	CCWWGG	5 cut(s)	616, 951, 1009, 1519, 1978
Bst2BI	CACGAG	1 cut(s)	2116
Bst2UI	CCWGG	2 cut(s)	1259, 1803
Bst4CI	ACNGT	8 cut(s)	349, 373, 830, 941, 1077, 1183, 1496, 1777
Bst6I	CTCTTC	3 cut(s)	479, 683, 897
BstACI	GRCGYC	3 cut(s)	605, 791, 2149
BstAFI	CTTAAG	1 cut(s)	2041
BstAPI	GCANNNNNTGC	3 cut(s)	1245, 1470, 1793
BstC8I	GCNNGC	8 cut(s)	181, 658, 861, 948, 1146, 1203, 1270, 1944
BstDEI	CTNAG	9 cut(s)	103, 131, 764, 849, 983, 1273, 1865, 2036, 2057
BstDSI	CCRYGG	6 cut(s)	248, 616, 1009, 1337, 1519, 1978
BstENI	CCTNNNNNAGG	1 cut(s)	47
BstF5I	GGATG	6 cut(s)	559, 1172, 1267, 1906, 1974, 2053
BstH2I	RGCGCY	3 cut(s)	9, 2081, 2152
BstHHI	GCGC	8 cut(s)	8, 153, 181, 183, 808, 2080, 2140, 2151
BstMAI	GTCTC	6 cut(s)	85, 223, 1544, 1848, 1868, 1922
BstMCI	CGRYCG	2 cut(s)	440, 1303
BstNI	CCWGG	2 cut(s)	1259, 1803
BstPAI	GACNNNNGTC	1 cut(s)	1860
BstSCI	CCNGG	6 cut(s)	397, 884, 1257, 1662, 1801, 1896
BstSLI	GKGCMC	1 cut(s)	1640
BstV1I	GCAGC	9 cut(s)	7, 153, 249, 685, 1252, 1551, 1709, 1918, 2065
BstV2I	GAAGAC	1 cut(s)	1226
BstX2I	RGATCY	3 cut(s)	636, 814, 1659
BstXI	CCANNNNNNTGG	2 cut(s)	1010, 1526
BstYI	RGATCY	3 cut(s)	636, 814, 1659
BstZI	CGGCCG	1 cut(s)	437
Bsu15I	ATCGAT	1 cut(s)	783
BsuTUI	ATCGAT	1 cut(s)	783
BtgI	CCRYGG	6 cut(s)	248, 616, 1009, 1337, 1519, 1978
BtsCI	GGATG	6 cut(s)	559, 1172, 1267, 1906, 1974, 2053
BtsIMutI	CAGTG	6 cut(s)	111, 946, 1073, 1188, 1281, 1787
BtuMI	TCGCGA	2 cut(s)	1127, 1299
BveI	ACCTGC	2 cut(s)	51, 212
Cac8I	GCNNGC	8 cut(s)	181, 658, 861, 948, 1146, 1203, 1270, 1944
CaiI	CAGNNNCTG	2 cut(s)	493, 1066
CciI	TCATGA	1 cut(s)	2001
CfoI	GCGC	8 cut(s)	8, 153, 181, 183, 808, 2080, 2140, 2151
Cfr10I	RCCGGY	1 cut(s)	1268
Cfr13I	GGNCC	7 cut(s)	109, 253, 528, 535, 571, 1032, 1426
ClaI	ATCGAT	1 cut(s)	783
CseI	GACGC	5 cut(s)	307, 400, 594, 854, 1207
Csp6I	GTAC	2 cut(s)	1447, 2097
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviAII	CATG	6 cut(s)	617, 1010, 1423, 1520, 1979, 2002
CviQI	GTAC	2 cut(s)	1447, 2097
DdeI	CTNAG	9 cut(s)	103, 131, 764, 849, 983, 1273, 1865, 2036, 2057
DinI	GGCGCC	1 cut(s)	2150
DriI	GACNNNNNGTC	1 cut(s)	753
EaeI	YGGCCR	8 cut(s)	395, 437, 738, 798, 1000, 1334, 1516, 1883
EagI	CGGCCG	1 cut(s)	437
Eam1104I	CTCTTC	3 cut(s)	479, 683, 897
Eam1105I	GACNNNNNGTC	1 cut(s)	753
EarI	CTCTTC	3 cut(s)	479, 683, 897
EciI	GGCGGA	2 cut(s)	265, 395
Ecl136II	GAGCTC	2 cut(s)	763, 989
EclXI	CGGCCG	1 cut(s)	437
Eco130I	CCWWGG	5 cut(s)	616, 951, 1009, 1519, 1978
Eco147I	AGGCCT	1 cut(s)	656
Eco24I	GRGCYC	2 cut(s)	765, 991
Eco31I	GGTCTC	1 cut(s)	85
Eco47I	GGWCC	4 cut(s)	528, 535, 1032, 1426
Eco52I	CGGCCG	1 cut(s)	437
Eco53kI	GAGCTC	2 cut(s)	763, 989
Eco57I	CTGAAG	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	2 cut(s)	763, 989
EcoNI	CCTNNNNNAGG	1 cut(s)	47
EcoO109I	RGGNCCY	2 cut(s)	535, 1032
EcoRI	GAATTC	2 cut(s)	515, 1709
EcoRII	CCWGG	2 cut(s)	1257, 1801
EcoT14I	CCWWGG	5 cut(s)	616, 951, 1009, 1519, 1978
EcoT22I	ATGCAT	1 cut(s)	1955
EcoT38I	GRGCYC	2 cut(s)	765, 991
EgeI	GGCGCC	1 cut(s)	2150
EheI	GGCGCC	1 cut(s)	2150
ErhI	CCWWGG	5 cut(s)	616, 951, 1009, 1519, 1978
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	6 cut(s)	620, 1013, 1426, 1523, 1982, 2005
FaqI	GGGAC	7 cut(s)	414, 950, 960, 1018, 1355, 1505, 1996
FatI	CATG	6 cut(s)	616, 1009, 1422, 1519, 1978, 2001
FauI	CCCGC	4 cut(s)	98, 104, 162, 852
FblI	GTMKAC	1 cut(s)	351
FokI	GGATG	6 cut(s)	546, 1179, 1274, 1913, 1961, 2060
FriOI	GRGCYC	2 cut(s)	765, 991
FspBI	CTAG	1 cut(s)	914
GlaI	GCGC	8 cut(s)	7, 152, 180, 182, 807, 2079, 2139, 2150
GsaI	CCCAGC	1 cut(s)	1039
GsuI	CTGGAG	3 cut(s)	1088, 1307, 1667
HaeII	RGCGCY	3 cut(s)	9, 2081, 2152
HgaI	GACGC	5 cut(s)	307, 400, 594, 854, 1207
HhaI	GCGC	8 cut(s)	8, 153, 181, 183, 808, 2080, 2140, 2151
Hin1I	GRCGYC	3 cut(s)	605, 791, 2149
Hin1II	CATG	6 cut(s)	620, 1013, 1426, 1523, 1982, 2005
Hin6I	GCGC	8 cut(s)	6, 151, 179, 181, 806, 2078, 2138, 2149
HinP1I	GCGC	8 cut(s)	6, 151, 179, 181, 806, 2078, 2138, 2149
HindIII	AAGCTT	4 cut(s)	665, 995, 1142, 1967
HphI	GGTGA	6 cut(s)	202, 328, 640, 1391, 1535, 1781
Hpy166II	GTNNAC	4 cut(s)	352, 612, 1906, 2113
Hpy8I	GTNNAC	4 cut(s)	352, 612, 1906, 2113
Hpy99I	CGWCG	9 cut(s)	323, 610, 686, 722, 793, 796, 827, 830, 1046
HpyAV	CCTTC	4 cut(s)	334, 1180, 1664, 1680
HpyCH4III	ACNGT	8 cut(s)	349, 373, 830, 941, 1077, 1183, 1496, 1777
HpyCH4IV	ACGT	5 cut(s)	567, 791, 930, 1312, 1374
HpyCH4V	TGCA	9 cut(s)	1148, 1170, 1318, 1473, 1567, 1680, 1787, 1953, 2053
HpyF3I	CTNAG	9 cut(s)	103, 131, 764, 849, 983, 1273, 1865, 2036, 2057
HpySE526I	ACGT	5 cut(s)	567, 791, 930, 1312, 1374
Hsp92I	GRCGYC	3 cut(s)	605, 791, 2149
Hsp92II	CATG	6 cut(s)	620, 1013, 1426, 1523, 1982, 2005
HspAI	GCGC	8 cut(s)	6, 151, 179, 181, 806, 2078, 2138, 2149
KasI	GGCGCC	1 cut(s)	2148
KflI	GGGWCCC	1 cut(s)	1032
Kpn2I	TCCGGA	1 cut(s)	1962
KroI	GCCGGC	1 cut(s)	1268
KroNI	GCCGGC	1 cut(s)	1270
LguI	GCTCTTC	2 cut(s)	683, 897
LmnI	GCTCC	5 cut(s)	98, 455, 760, 1288, 1801
Lsp1109I	GCAGC	9 cut(s)	7, 153, 249, 685, 1252, 1551, 1709, 1918, 2065
LweI	GCATC	6 cut(s)	162, 439, 1157, 1252, 1962, 2125
MaeI	CTAG	1 cut(s)	914
MaeII	ACGT	5 cut(s)	567, 791, 930, 1312, 1374
MaeIII	GTNAC	3 cut(s)	334, 1071, 1818
MauBI	CGCGCGCG	1 cut(s)	179
MbiI	CCGCTC	2 cut(s)	93, 576
MboII	GAAGA	7 cut(s)	466, 670, 871, 914, 1231, 1828, 2144
MfeI	CAATTG	1 cut(s)	751
MflI	RGATCY	3 cut(s)	636, 814, 1659
MhlI	GDGCHC	5 cut(s)	765, 991, 1285, 1455, 1640
MlsI	TGGCCA	6 cut(s)	740, 800, 1002, 1336, 1518, 1885
MluCI	AATT	6 cut(s)	125, 515, 751, 1176, 1293, 1709
MluNI	TGGCCA	6 cut(s)	740, 800, 1002, 1336, 1518, 1885
Mly113I	GGCGCC	1 cut(s)	2149
MlyI	GAGTC	8 cut(s)	396, 484, 777, 1079, 1411, 1870, 1924, 2108
MmeI	TCCRAC	4 cut(s)	108, 246, 492, 1385
Mox20I	TGGCCA	6 cut(s)	740, 800, 1002, 1336, 1518, 1885
Mph1103I	ATGCAT	1 cut(s)	1955
MroI	TCCGGA	1 cut(s)	1962
MroNI	GCCGGC	1 cut(s)	1268
MroXI	GAANNNNTTC	1 cut(s)	1970
MscI	TGGCCA	6 cut(s)	740, 800, 1002, 1336, 1518, 1885
MseI	TTAA	2 cut(s)	1083, 2042
MslI	CAYNNNNRTG	1 cut(s)	1524
Msp20I	TGGCCA	6 cut(s)	740, 800, 1002, 1336, 1518, 1885
MspA1I	CMGCKG	3 cut(s)	20, 1931, 2056
MspCI	CTTAAG	1 cut(s)	2041
MspR9I	CCNGG	6 cut(s)	399, 886, 1259, 1664, 1803, 1898
MunI	CAATTG	1 cut(s)	751
Mva1269I	GAATGC	1 cut(s)	1955
MvaI	CCWGG	2 cut(s)	1259, 1803
NaeI	GCCGGC	1 cut(s)	1270
NarI	GGCGCC	1 cut(s)	2149
NciI	CCSGG	4 cut(s)	399, 886, 1664, 1898
NcoI	CCATGG	4 cut(s)	616, 1009, 1519, 1978
NgoMIV	GCCGGC	1 cut(s)	1268
NlaIII	CATG	6 cut(s)	620, 1013, 1426, 1523, 1982, 2005
NlaIV	GGNNCC	7 cut(s)	254, 457, 816, 1033, 1034, 1290, 2150
NmeAIII	GCCGAG	1 cut(s)	1720
NmuCI	GTSAC	3 cut(s)	334, 1071, 1818
NruI	TCGCGA	2 cut(s)	1127, 1299
NsiI	ATGCAT	1 cut(s)	1955
PaeR7I	CTCGAG	1 cut(s)	137
PagI	TCATGA	1 cut(s)	2001
PauI	GCGCGC	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	656
PciSI	GCTCTTC	2 cut(s)	683, 897
PcsI	WCGNNNNNNNCGW	1 cut(s)	1309
PctI	GAATGC	1 cut(s)	1955
PdiI	GCCGGC	1 cut(s)	1270
PdmI	GAANNNNTTC	1 cut(s)	1970
PfeI	GAWTC	3 cut(s)	55, 1306, 1654
PflFI	GACNNNGTC	2 cut(s)	493, 604
PflMI	CCANNNNNTGG	2 cut(s)	393, 1514
Ple19I	CGATCG	1 cut(s)	1303
PleI	GAGTC	8 cut(s)	396, 484, 776, 1078, 1410, 1869, 1923, 2108
PluTI	GGCGCC	1 cut(s)	2152
PpsI	GAGTC	8 cut(s)	396, 484, 776, 1078, 1410, 1869, 1923, 2108
PpuMI	RGGWCCY	2 cut(s)	535, 1032
PshAI	GACNNNNGTC	1 cut(s)	1860
Psp124BI	GAGCTC	2 cut(s)	765, 991
Psp5II	RGGWCCY	2 cut(s)	535, 1032
Psp6I	CCWGG	2 cut(s)	1257, 1801
PspFI	CCCAGC	1 cut(s)	1035
PspGI	CCWGG	2 cut(s)	1257, 1801
PspN4I	GGNNCC	7 cut(s)	254, 457, 816, 1033, 1034, 1290, 2150
PspPI	GGNCC	7 cut(s)	109, 253, 528, 535, 571, 1032, 1426
PspPPI	RGGWCCY	2 cut(s)	535, 1032
PstNI	CAGNNNCTG	2 cut(s)	493, 1066
PsuI	RGATCY	3 cut(s)	636, 814, 1659
PsyI	GACNNNGTC	2 cut(s)	493, 604
PteI	GCGCGC	1 cut(s)	179
PvuI	CGATCG	1 cut(s)	1303
PvuII	CAGCTG	2 cut(s)	1931, 2056
RruI	TCGCGA	2 cut(s)	1127, 1299
RsaI	GTAC	2 cut(s)	1448, 2098
RsaNI	GTAC	2 cut(s)	1447, 2097
RseI	CAYNNNNRTG	1 cut(s)	1524
SacI	GAGCTC	2 cut(s)	765, 991
SapI	GCTCTTC	2 cut(s)	683, 897
SaqAI	TTAA	2 cut(s)	1083, 2042
Sau96I	GGNCC	7 cut(s)	109, 253, 528, 535, 571, 1032, 1426
SchI	GAGTC	8 cut(s)	396, 484, 777, 1079, 1411, 1870, 1924, 2108
ScrFI	CCNGG	6 cut(s)	399, 886, 1259, 1664, 1803, 1898
SduI	GDGCHC	5 cut(s)	765, 991, 1285, 1455, 1640
SfaNI	GCATC	6 cut(s)	162, 439, 1157, 1252, 1962, 2125
SfoI	GGCGCC	1 cut(s)	2150
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	4 cut(s)	528, 535, 1032, 1426
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	1524
SmlI	CTYRAG	5 cut(s)	137, 992, 1858, 1890, 2041
SmoI	CTYRAG	5 cut(s)	137, 992, 1858, 1890, 2041
Sse9I	AATT	6 cut(s)	125, 515, 751, 1176, 1293, 1709
SseBI	AGGCCT	1 cut(s)	656
SspDI	GGCGCC	1 cut(s)	2148
SspMI	CTAG	1 cut(s)	914
SstI	GAGCTC	2 cut(s)	765, 991
StuI	AGGCCT	1 cut(s)	656
StyD4I	CCNGG	6 cut(s)	397, 884, 1257, 1662, 1801, 1896
StyI	CCWWGG	5 cut(s)	616, 951, 1009, 1519, 1978
TaaI	ACNGT	8 cut(s)	349, 373, 830, 941, 1077, 1183, 1496, 1777
TaiI	ACGT	5 cut(s)	570, 794, 933, 1315, 1377
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	6 cut(s)	125, 515, 751, 1176, 1293, 1709
TatI	WGTACW	1 cut(s)	2096
TfiI	GAWTC	3 cut(s)	55, 1306, 1654
Tru1I	TTAA	2 cut(s)	1083, 2042
Tru9I	TTAA	2 cut(s)	1083, 2042
TscAI	CASTG	6 cut(s)	111, 946, 1080, 1188, 1281, 1794
TseFI	GTSAC	3 cut(s)	334, 1071, 1818
TseI	GCWGC	9 cut(s)	20, 166, 262, 673, 1265, 1564, 1722, 1931, 2053
Tsp45I	GTSAC	3 cut(s)	334, 1071, 1818
TspDTI	ATGAA	5 cut(s)	1401, 1769, 1963, 1990, 2103
TspGWI	ACGGA	2 cut(s)	205, 322
TspRI	CASTG	6 cut(s)	111, 946, 1080, 1188, 1281, 1794
Tth111I	GACNNNGTC	2 cut(s)	493, 604
Van91I	CCANNNNNTGG	2 cut(s)	393, 1514
Vha464I	CTTAAG	1 cut(s)	2041
VpaK11BI	GGWCC	4 cut(s)	528, 535, 1032, 1426
XagI	CCTNNNNNAGG	1 cut(s)	47
XapI	RAATTY	3 cut(s)	125, 515, 1709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	1970
XspI	CTAG	1 cut(s)	914
ZraI	GACGTC	1 cut(s)	792
Zsp2I	ATGCAT	1 cut(s)	1955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.