Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009306

Physical Location & Seq

Genomic Coordinates Reverse (-)

4782818 .. 4783395

Gene Structure 578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05521.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGACCGCCGCAGCTCTGATCAACGACCTCCCCGAGGCGATTCTCACCACCATCATCGCCTTGCTCTCCGACACCCGTACCCGCAACTCTGTCGCCCACCGCCTCTGCCTCGCCTTCCCCTCCGTCACTTCCCTCACCGTCTACTTCCGATCCTCCTCCACCGTCGAGATCGTCTTCAGTCTCTGGCCGCGTTTGCGCCGCCTCAAGCTTGTCCGCTGGCACCAGCGCCCGCAGTCGAATCTCGGCGCCGACTTCGATCCTCTCTTCCAGCAATGCTACGCTCTCTCTGATTTGGACTTGTCGGAGTTCTACTACTGGACCGAGGACCTCCCTCCGGTTCTGGAAGCCCATCCCAACGTGGCCAGGTCACTCACTAAGCTCAATCTCCTTACGGCGTCGTTTACAGAGGGTTTCAAAGCCACCGAGATCAGATCGATCACCGTGGCGGATGAAACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006810 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009653 GO:0009914 GO:0009926 GO:0009934 GO:0009987 GO:0010016 GO:0010029 GO:0010035 GO:0010187 GO:0010817 GO:0016567 GO:0019005 GO:0019538 GO:0022603 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042221 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048367 GO:0048509 GO:0048518 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0060918 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080134 GO:1900140 GO:1901564 GO:1901700 GO:1902494 GO:1902584 GO:1990234 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.32

Weight (kDa)

5.58

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42620
fragaria_vesca	FvH4_2g05661 FvH4_2g12921 FvH4_4g05521 FvH4_6g27480
malus_domestica	MD09G1236800.v1.1 MD17G1266700.v1.1
prunus_persica	Prupe.3G117700_v2.0.a1
pyrus_communis	pycom09g15540
rosa_chinensis	RchiOBHm_Chr2g0128401 RchiOBHm_Chr2g0128411 RchiOBHm_Chr2g0129761
rosa_laevigata	RLG00000019101
rosa_multiflora	Rmu_ssc0000459.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114320
rosa_rugosa	Rorug02G0289700
rosa_samantha	Rh2AG340400 Rh2BG348700 Rh2BG348900 Rh2CG327800 Rh2DG367200
rosa_wichuraiana	Rw2G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	219, 245
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	190
AciI	CCGC	9 cut(s)	6, 9, 82, 100, 188, 199, 214, 230, 446
AclWI	GGATC	2 cut(s)	144, 251
AcoI	YGGCCR	2 cut(s)	185, 360
AcuI	CTGAAG	1 cut(s)	160
AcyI	GRCGYC	2 cut(s)	246, 395
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	34, 334
AgsI	TTSAA	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	3 cut(s)	14, 208, 379
AluI	AGCT	3 cut(s)	14, 208, 379
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	144, 251
AlwNI	CAGNNNCTG	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	2 cut(s)	185, 360
ApeKI	GCWGC	1 cut(s)	11
AspLEI	GCGC	3 cut(s)	198, 228, 248
AspS9I	GGNCC	2 cut(s)	318, 325
AsuHPI	GGTGA	3 cut(s)	37, 127, 430
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	318, 325
BaeI	ACNNNNGTAYC	2 cut(s)	61, 94
BalI	TGGCCA	1 cut(s)	362
BanI	GGYRCC	2 cut(s)	219, 245
BbsI	GAAGAC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	59, 357
BceAI	ACGGC	1 cut(s)	408
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	1 cut(s)	364
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	185
BfoI	RGCGCY	2 cut(s)	229, 249
BisI	GCNGC	4 cut(s)	9, 12, 188, 199
BlsI	GCNGC	4 cut(s)	10, 13, 189, 200
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	2 cut(s)	318, 325
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	318, 325
BmiI	GGNNCC	2 cut(s)	221, 247
BmrFI	CCNGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	434
BsaHI	GRCGYC	2 cut(s)	246, 395
BsaJI	CCNNGG	3 cut(s)	33, 321, 441
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 334
Bse1I	ACTGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	364
BseCI	ATCGAT	1 cut(s)	434
BseDI	CCNNGG	3 cut(s)	33, 321, 441
BseGI	GGATG	2 cut(s)	349, 454
BseLI	CCNNNNNNNGG	2 cut(s)	34, 334
BseMI	GCAATG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	187, 362
BshNI	GGYRCC	2 cut(s)	219, 245
BshVI	ATCGAT	1 cut(s)	434
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	34, 334
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	187, 362
BsoBI	CYCGRG	1 cut(s)	32
Bsp143I	GATC	7 cut(s)	18, 149, 168, 256, 426, 431, 435
BspACI	CCGC	9 cut(s)	6, 9, 82, 100, 188, 199, 214, 230, 446
BspANI	GGCC	2 cut(s)	187, 362
BspDI	ATCGAT	1 cut(s)	434
BspFNI	CGCG	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	221, 247
BspPI	GGATC	2 cut(s)	144, 251
BspT107I	GGYRCC	2 cut(s)	219, 245
BsrDI	GCAATG	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	3 cut(s)	33, 321, 441
BssMI	GATC	7 cut(s)	18, 149, 168, 256, 426, 431, 435
BssNI	GRCGYC	2 cut(s)	246, 395
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	3 cut(s)	139, 163, 442
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	2 cut(s)	246, 395
BstC8I	GCNNGC	2 cut(s)	218, 230
BstDEI	CTNAG	1 cut(s)	375
BstDSI	CCRYGG	1 cut(s)	441
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstF5I	GGATG	2 cut(s)	349, 454
BstFNI	CGCG	1 cut(s)	190
BstH2I	RGCGCY	2 cut(s)	229, 249
BstHHI	GCGC	3 cut(s)	198, 228, 248
BstKTI	GATC	7 cut(s)	21, 152, 171, 259, 429, 434, 438
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	7 cut(s)	18, 149, 168, 256, 426, 431, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	187, 362
BsuTUI	ATCGAT	1 cut(s)	434
BtgI	CCRYGG	1 cut(s)	441
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	349, 454
Cac8I	GCNNGC	2 cut(s)	218, 230
CaiI	CAGNNNCTG	1 cut(s)	183
CfoI	GCGC	3 cut(s)	198, 228, 248
Cfr13I	GGNCC	2 cut(s)	318, 325
ClaI	ATCGAT	1 cut(s)	434
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	1 cut(s)	78
CviJI	RGCY	7 cut(s)	14, 187, 208, 347, 362, 379, 419
CviKI_1	RGCY	7 cut(s)	14, 187, 208, 347, 362, 379, 419
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	1 cut(s)	375
DinI	GGCGCC	1 cut(s)	247
DpnI	GATC	7 cut(s)	20, 151, 170, 258, 428, 433, 437
DpnII	GATC	7 cut(s)	18, 149, 168, 256, 426, 431, 435
EaeI	YGGCCR	2 cut(s)	185, 360
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
EciI	GGCGGA	1 cut(s)	461
Eco47I	GGWCC	2 cut(s)	318, 325
Eco57I	CTGAAG	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	32
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	362
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
FauI	CCCGC	2 cut(s)	89, 237
FbaI	TGATCA	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	9, 12, 188, 199
FokI	GGATG	1 cut(s)	336
Fsp4HI	GCNGC	4 cut(s)	9, 12, 188, 199
GlaI	GCGC	3 cut(s)	197, 227, 247
GluI	GCNGC	4 cut(s)	9, 12, 188, 199
HaeII	RGCGCY	2 cut(s)	229, 249
HaeIII	GGCC	2 cut(s)	187, 362
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	3 cut(s)	198, 228, 248
Hin1I	GRCGYC	2 cut(s)	246, 395
Hin6I	GCGC	3 cut(s)	196, 226, 246
HinP1I	GCGC	3 cut(s)	196, 226, 246
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	40, 238
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	3 cut(s)	37, 127, 430
Hpy166II	GTNNAC	2 cut(s)	142, 402
Hpy188I	TCNGA	6 cut(s)	18, 70, 149, 289, 304, 431
Hpy188III	TCNNGA	2 cut(s)	166, 341
Hpy8I	GTNNAC	2 cut(s)	142, 402
Hpy99I	CGWCG	2 cut(s)	167, 400
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	3 cut(s)	139, 163, 442
HpyCH4IV	ACGT	1 cut(s)	357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	2 cut(s)	246, 395
HspAI	GCGC	3 cut(s)	196, 226, 246
KasI	GGCGCC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	7 cut(s)	18, 149, 168, 256, 426, 431, 435
LpnPI	CCDG	9 cut(s)	169, 202, 236, 281, 301, 326, 348, 349, 376
Lsp1109I	GCAGC	1 cut(s)	23
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	124, 366
MalI	GATC	7 cut(s)	20, 151, 170, 258, 428, 433, 437
MboI	GATC	7 cut(s)	18, 149, 168, 256, 426, 431, 435
MboII	GAAGA	2 cut(s)	166, 256
MlsI	TGGCCA	1 cut(s)	362
MluNI	TGGCCA	1 cut(s)	362
Mly113I	GGCGCC	1 cut(s)	246
MmeI	TCCRAC	2 cut(s)	93, 282
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	1 cut(s)	460
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	193
NarI	GGCGCC	1 cut(s)	246
NdeII	GATC	7 cut(s)	18, 149, 168, 256, 426, 431, 435
NlaIV	GGNNCC	2 cut(s)	221, 247
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	2 cut(s)	124, 366
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	40, 238
PkrI	GCNGC	4 cut(s)	10, 13, 189, 200
PluTI	GGCGCC	1 cut(s)	249
PpuMI	RGGWCCY	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	221, 247
PspPI	GGNCC	2 cut(s)	318, 325
PspPPI	RGGWCCY	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	183
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	460
SatI	GCNGC	4 cut(s)	9, 12, 188, 199
Sau3AI	GATC	7 cut(s)	18, 149, 168, 256, 426, 431, 435
Sau96I	GGNCC	2 cut(s)	318, 325
ScrFI	CCNGG	1 cut(s)	364
SetI	ASST	7 cut(s)	16, 30, 210, 330, 360, 368, 381
SfoI	GGCGCC	1 cut(s)	247
SinI	GGWCC	2 cut(s)	318, 325
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SsiI	CCGC	9 cut(s)	6, 9, 82, 100, 188, 199, 214, 230, 446
SspDI	GGCGCC	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	139, 163, 442
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	4 cut(s)	165, 236, 255, 434
TaqII	GACCGA	1 cut(s)	335
TauI	GCSGC	3 cut(s)	11, 190, 201
TfiI	GAWTC	2 cut(s)	40, 238
Tru1I	TTAA	1 cut(s)	460
Tru9I	TTAA	1 cut(s)	460
TseFI	GTSAC	2 cut(s)	124, 366
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	2 cut(s)	124, 366
TspGWI	ACGGA	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	318, 325
XagI	CCTNNNNNAGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.