Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009306

Physical Location & Seq

Genomic Coordinates Forward (+)

47163567 .. 47164310

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG348900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGACCTGAAATGGAGTGATGAGTACGAGCACAGGATCAGCAAGAAGTGCAAGTATGGATCAGATGGGGACTGTTCCTATATGCCAACCAATGGCTACGCGAATGGAAATGGGTTTTGGAGTGATGAGACTTGGGAAAGGCTGCAGTACCTATCACTTTGGATTGAGGTGGGGGAGTTGCTGACATCATTGCCAGAGGTGGGTCTGGACGAGTGCCCCAATCTGGAGGAGATTCAGATCCGGGTGGAAGGCGATTGCAGGGGAAGGCACAAACCCACACAGCGAGAATTCGGGTTAAGCTGCCTATCCCGTTTTCCTCGGCTGTCAAAGATGAAGCTGGATTGTGGTGATACTGTGGGATTTGCACTGACTGCTCCACCAGGACAGATGGACTTGTCACTTTGGGAGAGGTTCTTCCTCTCTGGGATTGGAGAATTGAGTCTCAGCGAAGTCGATTATTGGCCACCTCAAGACCGGGATGTGAACCAGAGGAGTCTCTGGCTTCCAGCTGCCGGATTGCTGGCAGAATGCATCACACTCCGGAAGCTTTTCATCCATGGGACTGCTCACGAACATTTCATGATGTTCCTTGTGAGAAACCCAAACCTCAACCTCAGCTTAAGGGATGTGCAACTGAGAGAGGATTACTATCCAGCGCCCGAAAATGAAATGAGTACAGAGATGAGGGTGGACTCGTGCTGTCGCTTTGAAGATGCGCTGAACAGGCGCACAATCCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006810 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009653 GO:0009914 GO:0009926 GO:0009934 GO:0009987 GO:0010016 GO:0010029 GO:0010035 GO:0010187 GO:0010817 GO:0016567 GO:0019005 GO:0019538 GO:0022603 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042221 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048367 GO:0048509 GO:0048518 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0060918 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080134 GO:1900140 GO:1901564 GO:1901700 GO:1902494 GO:1902584 GO:1990234 GO:2000026 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

28.57

Weight (kDa)

4.89

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42620
fragaria_vesca	FvH4_2g05661 FvH4_2g12921 FvH4_4g05521 FvH4_6g27480
malus_domestica	MD09G1236800.v1.1 MD17G1266700.v1.1
prunus_persica	Prupe.3G117700_v2.0.a1
pyrus_communis	pycom09g15540
rosa_chinensis	RchiOBHm_Chr2g0128401 RchiOBHm_Chr2g0128411 RchiOBHm_Chr2g0129761
rosa_laevigata	RLG00000019101
rosa_multiflora	Rmu_ssc0000459.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114320
rosa_rugosa	Rorug02G0289700
rosa_samantha	Rh2AG340400 Rh2BG348700 Rh2BG348900 Rh2CG327800 Rh2DG367200
rosa_wichuraiana	Rw2G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccII	CGCG	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	540
AclWI	GGATC	3 cut(s)	44, 67, 232
AcoI	YGGCCR	1 cut(s)	461
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	3 cut(s)	26, 149, 676
AfiI	CCNNNNNNNGG	4 cut(s)	92, 200, 223, 512
AflII	CTTAAG	1 cut(s)	619
AgsI	TTSAA	1 cut(s)	710
AjnI	CCWGG	1 cut(s)	379
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	5 cut(s)	300, 337, 509, 547, 618
AluI	AGCT	5 cut(s)	300, 337, 509, 547, 618
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	3 cut(s)	122, 446, 500
AlwI	GGATC	3 cut(s)	44, 67, 232
Aor13HI	TCCGGA	1 cut(s)	540
AoxI	GGCC	1 cut(s)	461
ApeKI	GCWGC	3 cut(s)	142, 300, 509
ApoI	RAATTY	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	3 cut(s)	658, 718, 729
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	242, 476
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	463
BauI	CACGAG	1 cut(s)	694
Bbv12I	GWGCWC	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	614
BbvI	GCAGC	3 cut(s)	129, 287, 496
BccI	CCATC	2 cut(s)	59, 382
BciT130I	CCWGG	1 cut(s)	381
BcnI	CCSGG	2 cut(s)	242, 476
BcoDI	GTCTC	3 cut(s)	122, 446, 500
BfmI	CTRYAG	1 cut(s)	143
BfoI	RGCGCY	1 cut(s)	659
BfrI	CTTAAG	1 cut(s)	619
BisI	GCNGC	3 cut(s)	143, 301, 510
BlsI	GCNGC	3 cut(s)	144, 302, 511
Bme1390I	CCNGG	3 cut(s)	242, 381, 476
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	3 cut(s)	242, 381, 476
BmsI	GCATC	2 cut(s)	540, 703
BpmI	CTGGAG	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	614
BpuEI	CTTGAG	1 cut(s)	453
BpuMI	CCSGG	2 cut(s)	242, 476
BsaBI	GATNNNNATC	2 cut(s)	236, 648
BsaJI	CCNNGG	2 cut(s)	317, 556
BsaWI	WCCGGW	1 cut(s)	540
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 200, 223, 512
Bse3DI	GCAATG	1 cut(s)	188
Bse8I	GATNNNNATC	2 cut(s)	236, 648
BseAI	TCCGGA	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	317, 556
BseGI	GGATG	3 cut(s)	484, 552, 631
BseJI	GATNNNNATC	2 cut(s)	236, 648
BseLI	CCNNNNNNNGG	4 cut(s)	92, 200, 223, 512
BseMI	GCAATG	1 cut(s)	188
BseMII	CTCAG	3 cut(s)	457, 626, 628
BseRI	GAGGAG	2 cut(s)	242, 505
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	3 cut(s)	129, 287, 496
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	4 cut(s)	241, 475, 513, 541
BslFI	GGGAC	2 cut(s)	83, 574
BslI	CCNNNNNNNGG	4 cut(s)	92, 200, 223, 512
BsmAI	GTCTC	3 cut(s)	122, 446, 500
BsmFI	GGGAC	2 cut(s)	83, 574
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	33, 218
Bsp13I	TCCGGA	1 cut(s)	540
Bsp143I	GATC	3 cut(s)	36, 59, 237
Bsp19I	CCATGG	1 cut(s)	556
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	3 cut(s)	456, 627, 627
BspEI	TCCGGA	1 cut(s)	540
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	579
BspMAI	CTGCAG	1 cut(s)	147
BspPI	GGATC	3 cut(s)	44, 67, 232
BspTI	CTTAAG	1 cut(s)	619
BsrDI	GCAATG	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	317, 556
BssMI	GATC	3 cut(s)	36, 59, 237
BssSI	CACGAG	1 cut(s)	694
BssT1I	CCWWGG	1 cut(s)	556
Bst2BI	CACGAG	1 cut(s)	694
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	74, 355
BstAFI	CTTAAG	1 cut(s)	619
BstAPI	GCANNNNNTGC	2 cut(s)	48, 371
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	3 cut(s)	443, 614, 635
BstDSI	CCRYGG	1 cut(s)	556
BstF5I	GGATG	3 cut(s)	484, 552, 631
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	659
BstHHI	GCGC	3 cut(s)	658, 718, 729
BstKTI	GATC	3 cut(s)	39, 62, 240
BstMAI	GTCTC	3 cut(s)	122, 446, 500
BstMBI	GATC	3 cut(s)	36, 59, 237
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 371, 724
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	3 cut(s)	240, 379, 474
BstSFI	CTRYAG	1 cut(s)	143
BstSLI	GKGCMC	1 cut(s)	218
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	3 cut(s)	129, 287, 496
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	463
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	3 cut(s)	484, 552, 631
BtsIMutI	CAGTG	1 cut(s)	365
Cac8I	GCNNGC	1 cut(s)	522
CciI	TCATGA	1 cut(s)	579
CfoI	GCGC	3 cut(s)	658, 718, 729
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	25, 148, 675
CviAII	CATG	2 cut(s)	557, 580
CviQI	GTAC	3 cut(s)	25, 148, 675
DdeI	CTNAG	3 cut(s)	443, 614, 635
DpnI	GATC	3 cut(s)	38, 61, 239
DpnII	GATC	3 cut(s)	36, 59, 237
EaeI	YGGCCR	1 cut(s)	461
Eco130I	CCWWGG	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	556
EcoT22I	ATGCAT	1 cut(s)	533
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	2 cut(s)	560, 583
FaiI	YATR	5 cut(s)	57, 81, 83, 558, 581
FaqI	GGGAC	2 cut(s)	83, 574
FatI	CATG	2 cut(s)	556, 579
Fnu4HI	GCNGC	3 cut(s)	143, 301, 510
FokI	GGATG	3 cut(s)	491, 539, 638
Fsp4HI	GCNGC	3 cut(s)	143, 301, 510
GlaI	GCGC	3 cut(s)	657, 717, 728
GluI	GCNGC	3 cut(s)	143, 301, 510
GsuI	CTGGAG	1 cut(s)	245
HaeII	RGCGCY	1 cut(s)	659
HaeIII	GGCC	1 cut(s)	463
HapII	CCGG	4 cut(s)	241, 475, 513, 541
HhaI	GCGC	3 cut(s)	658, 718, 729
Hin1II	CATG	2 cut(s)	560, 583
Hin6I	GCGC	3 cut(s)	656, 716, 727
HinP1I	GCGC	3 cut(s)	656, 716, 727
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	4 cut(s)	232, 439, 493, 692
HpaII	CCGG	4 cut(s)	241, 475, 513, 541
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	484, 691
Hpy188I	TCNGA	2 cut(s)	64, 237
Hpy188III	TCNNGA	6 cut(s)	206, 224, 470, 541, 569, 580
Hpy8I	GTNNAC	2 cut(s)	484, 691
HpyAV	CCTTC	2 cut(s)	242, 258
HpyCH4III	ACNGT	2 cut(s)	74, 355
HpyCH4V	TGCA	6 cut(s)	51, 145, 258, 365, 531, 631
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 371, 724
HpyF3I	CTNAG	3 cut(s)	443, 614, 635
Hsp92II	CATG	2 cut(s)	560, 583
HspAI	GCGC	3 cut(s)	656, 716, 727
Kpn2I	TCCGGA	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	36, 59, 237
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	3 cut(s)	129, 287, 496
LweI	GCATC	2 cut(s)	540, 703
MaeIII	GTNAC	1 cut(s)	396
MalI	GATC	3 cut(s)	38, 61, 239
MboI	GATC	3 cut(s)	36, 59, 237
MboII	GAAGA	2 cut(s)	406, 722
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	33, 218
MlsI	TGGCCA	1 cut(s)	463
MluCI	AATT	2 cut(s)	287, 434
MluNI	TGGCCA	1 cut(s)	463
MlyI	GAGTC	3 cut(s)	448, 502, 686
Mox20I	TGGCCA	1 cut(s)	463
Mph1103I	ATGCAT	1 cut(s)	533
MroI	TCCGGA	1 cut(s)	540
MroXI	GAANNNNTTC	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	463
MseI	TTAA	2 cut(s)	296, 620
Msp20I	TGGCCA	1 cut(s)	463
MspA1I	CMGCKG	1 cut(s)	509
MspCI	CTTAAG	1 cut(s)	619
MspI	CCGG	4 cut(s)	241, 475, 513, 541
MspR9I	CCNGG	3 cut(s)	242, 381, 476
Mva1269I	GAATGC	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	48, 371, 724
NciI	CCSGG	2 cut(s)	242, 476
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	3 cut(s)	36, 59, 237
NlaIII	CATG	2 cut(s)	560, 583
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	396
NsiI	ATGCAT	1 cut(s)	533
PagI	TCATGA	1 cut(s)	579
PctI	GAATGC	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	1 cut(s)	232
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	144, 302, 511
PleI	GAGTC	3 cut(s)	447, 501, 686
PpsI	GAGTC	3 cut(s)	447, 501, 686
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	3 cut(s)	26, 149, 676
RsaNI	GTAC	3 cut(s)	25, 148, 675
SaqAI	TTAA	2 cut(s)	296, 620
SatI	GCNGC	3 cut(s)	143, 301, 510
Sau3AI	GATC	3 cut(s)	36, 59, 237
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	448, 502, 686
ScrFI	CCNGG	3 cut(s)	242, 381, 476
SduI	GDGCHC	2 cut(s)	33, 218
SfaNI	GCATC	2 cut(s)	540, 703
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	468, 619
SmoI	CTYRAG	2 cut(s)	468, 619
Sse9I	AATT	2 cut(s)	287, 434
StyD4I	CCNGG	3 cut(s)	240, 379, 474
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	74, 355
TaqI	TCGA	1 cut(s)	453
TasI	AATT	2 cut(s)	287, 434
TatI	WGTACW	1 cut(s)	674
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	296, 620
Tru9I	TTAA	2 cut(s)	296, 620
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	396
TseI	GCWGC	3 cut(s)	142, 300, 509
Tsp45I	GTSAC	1 cut(s)	396
TspDTI	ATGAA	4 cut(s)	347, 541, 568, 681
TspRI	CASTG	1 cut(s)	372
Van91I	CCANNNNNTGG	1 cut(s)	92
Vha464I	CTTAAG	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	548
Zsp2I	ATGCAT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.