Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004803

Physical Location & Seq

Genomic Coordinates Forward (+)

5602646 .. 5607528

Gene Structure 4883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06760.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCTGCTACTTGTGCGTTAATCAACACCTTCCAACCCTCTTCCCTCCCACATCTCCCAGGACCCAAACGGGCAATCACCAACCTGTCTCTCCTAACAACAACAACTCCATCTCGTGTTGGGTGCTGCCGCCGTTCAAAGACATCCCTCCTCCCTTGTGTCTCCTCCTCCCAAAGCTTCCCCGTCACCCTCAACGATTACCAGTTTCTTGATGGTTCTACTGAGGTGGAATTGAGATTACAGCTGGGGGGACGAAACATCACAAACTCCAGAGACATTTTTGTGGATGCAAATGGCTCATCTTTAACAATAAAAGTACGGCTCTCTGGGTCCTTTGTCACGCTTATGGAAACTAATCAACTGTTTGATAAAATAAAGCCTGCTGAAACAATATGGTATATAGATGAAGATCAGCTAGTAATTAACTTGAAGAAGCATGATCCAGATTTAAAATGGCCTGACATTGTTGAGTCGTGGGAGTCTTTGACTATGGGATCAATGCAACTTTTGAAAGGAACATCAATTTACATTGTTGGTGATTCAACTGAAATTAACCAGAAAGTGGCTCAAGAACTTGCAGTTGGTCTGGGATATACACCACTCACTACGAAGGAGTTGCTGGAAGTAGTTGCCAAGCAGAGTGTTGACTCATGGCTGCTTGCTGAAGGTTCTGAATCTGTAGTGGAAGCAGAAAGTGCTATATTACAAAGTTTAATCATGCTAGGGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CS SKI

Protein Analysis

244

Amino Acids

26.62

Weight (kDa)

4.93

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35500
fragaria_vesca	FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010
malus_domestica	MD06G1026400.v1.1
prunus_persica	Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1
pyrus_communis	pycom06g02160
rosa_chinensis	RchiOBHm_Chr7g0211741
rosa_laevigata	RLG00000002972
rosa_multiflora	Rmu_sc0001875.1_g000021
rosa_roxburghii	Rroxscaffold_3G00247480
rosa_rugosa	Rorug07G0128200
rosa_samantha	Rh7AG260900 Rh7BG254400 Rh7CG277400 Rh7DG267500
rosa_wichuraiana	Rw7G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	562
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	2 cut(s)	434, 502
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	562
AgsI	TTSAA	4 cut(s)	138, 430, 511, 543
AjnI	CCWGG	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	3 cut(s)	177, 244, 415
AluI	AGCT	3 cut(s)	177, 244, 415
Alw26I	GTCTC	3 cut(s)	93, 166, 267
AlwI	GGATC	2 cut(s)	434, 502
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	3 cut(s)	5, 126, 655
AspS9I	GGNCC	2 cut(s)	62, 330
AsuHPI	GGTGA	3 cut(s)	70, 178, 548
AvaII	GGWCC	2 cut(s)	62, 330
BauI	CACGAG	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	113, 642
BccI	CCATC	2 cut(s)	118, 206
BceAI	ACGGC	2 cut(s)	117, 335
BcgI	CGANNNNNNTGC	2 cut(s)	598, 632
BciT130I	CCWGG	1 cut(s)	60
BcoDI	GTCTC	3 cut(s)	93, 166, 267
BfaI	CTAG	2 cut(s)	416, 722
BfmI	CTRYAG	1 cut(s)	678
BisI	GCNGC	4 cut(s)	6, 127, 130, 656
BlsI	GCNGC	4 cut(s)	7, 128, 131, 657
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	2 cut(s)	62, 330
BmgT120I	GGNCC	2 cut(s)	62, 330
BmiI	GGNNCC	2 cut(s)	64, 331
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	552
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse1I	ACTGG	1 cut(s)	202
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	2 cut(s)	143, 292
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	3 cut(s)	140, 154, 157
BseXI	GCAGC	2 cut(s)	113, 642
BseYI	CCCAGC	1 cut(s)	244
BshFI	GGCC	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmAI	GTCTC	3 cut(s)	93, 166, 267
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	457
Bsp143I	GATC	3 cut(s)	409, 439, 494
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	64, 331
BspPI	GGATC	2 cut(s)	434, 502
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	3 cut(s)	409, 439, 494
BssSI	CACGAG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstC8I	GCNNGC	2 cut(s)	381, 660
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	143, 292
BstKTI	GATC	3 cut(s)	412, 442, 497
BstMAI	GTCTC	3 cut(s)	93, 166, 267
BstMBI	GATC	3 cut(s)	409, 439, 494
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 695
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	2 cut(s)	113, 642
BsuRI	GGCC	1 cut(s)	457
BtsCI	GGATG	2 cut(s)	143, 292
Cac8I	GCNNGC	2 cut(s)	381, 660
Cfr13I	GGNCC	2 cut(s)	62, 330
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	3 cut(s)	437, 651, 718
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	3 cut(s)	411, 441, 496
DpnII	GATC	3 cut(s)	409, 439, 494
DraI	TTTAAA	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	62, 330
Eco57I	CTGAAG	1 cut(s)	684
EcoO109I	RGGNCCY	2 cut(s)	62, 330
EcoRII	CCWGG	1 cut(s)	58
FaeI	CATG	3 cut(s)	440, 654, 721
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	3 cut(s)	436, 650, 717
Fnu4HI	GCNGC	4 cut(s)	6, 127, 130, 656
FokI	GGATG	2 cut(s)	130, 299
Fsp4HI	GCNGC	4 cut(s)	6, 127, 130, 656
FspBI	CTAG	2 cut(s)	416, 722
GluI	GCNGC	4 cut(s)	6, 127, 130, 656
GsaI	CCCAGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	457
Hin1II	CATG	3 cut(s)	440, 654, 721
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	5 cut(s)	470, 479, 539, 647, 674
HphI	GGTGA	3 cut(s)	70, 178, 548
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	1 cut(s)	673
Hpy188III	TCNNGA	4 cut(s)	209, 270, 443, 569
Hpy8I	GTNNAC	1 cut(s)	646
HpyAV	CCTTC	3 cut(s)	40, 604, 659
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	290, 502, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 695
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	440, 654, 721
Kzo9I	GATC	3 cut(s)	409, 439, 494
Lsp1109I	GCAGC	2 cut(s)	113, 642
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	2 cut(s)	416, 722
MaeIII	GTNAC	2 cut(s)	184, 337
MalI	GATC	3 cut(s)	411, 441, 496
MboI	GATC	3 cut(s)	409, 439, 494
MboII	GAAGA	3 cut(s)	33, 419, 442
MluCI	AATT	4 cut(s)	230, 420, 522, 549
MlyI	GAGTC	3 cut(s)	479, 488, 641
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	8 cut(s)	49, 56, 158, 161, 175, 178, 200, 217
MseI	TTAA	6 cut(s)	20, 305, 423, 449, 552, 713
MslI	CAYNNNNRTG	2 cut(s)	281, 344
MspA1I	CMGCKG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	14, 695
NdeII	GATC	3 cut(s)	409, 439, 494
NlaIII	CATG	3 cut(s)	440, 654, 721
NlaIV	GGNNCC	2 cut(s)	64, 331
NmuCI	GTSAC	2 cut(s)	184, 337
PfeI	GAWTC	2 cut(s)	539, 674
PflMI	CCANNNNNTGG	1 cut(s)	562
PkrI	GCNGC	4 cut(s)	7, 128, 131, 657
PleI	GAGTC	3 cut(s)	478, 487, 641
PpsI	GAGTC	3 cut(s)	478, 487, 641
PpuMI	RGGWCCY	2 cut(s)	62, 330
Psp5II	RGGWCCY	2 cut(s)	62, 330
Psp6I	CCWGG	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	64, 331
PspPI	GGNCC	2 cut(s)	62, 330
PspPPI	RGGWCCY	2 cut(s)	62, 330
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
RseI	CAYNNNNRTG	2 cut(s)	281, 344
SaqAI	TTAA	6 cut(s)	20, 305, 423, 449, 552, 713
SatI	GCNGC	4 cut(s)	6, 127, 130, 656
Sau3AI	GATC	3 cut(s)	409, 439, 494
Sau96I	GGNCC	2 cut(s)	62, 330
SchI	GAGTC	3 cut(s)	479, 488, 641
ScrFI	CCNGG	1 cut(s)	60
SetI	ASST	7 cut(s)	32, 87, 179, 228, 246, 417, 670
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	678
SinI	GGWCC	2 cut(s)	62, 330
SmiMI	CAYNNNNRTG	2 cut(s)	281, 344
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
Sse9I	AATT	4 cut(s)	230, 420, 522, 549
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	2 cut(s)	416, 722
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	363
TasI	AATT	4 cut(s)	230, 420, 522, 549
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	539, 674
Tru1I	TTAA	6 cut(s)	20, 305, 423, 449, 552, 713
Tru9I	TTAA	6 cut(s)	20, 305, 423, 449, 552, 713
TseFI	GTSAC	2 cut(s)	184, 337
TseI	GCWGC	3 cut(s)	5, 126, 655
Tsp45I	GTSAC	2 cut(s)	184, 337
TspDTI	ATGAA	1 cut(s)	420
Van91I	CCANNNNNTGG	1 cut(s)	562
VpaK11BI	GGWCC	2 cut(s)	62, 330
XcmI	CCANNNNNNNNNTGG	2 cut(s)	209, 450
XspI	CTAG	2 cut(s)	416, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.