Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004803

Physical Location & Seq

Genomic Coordinates Forward (+)

26194681 .. 26199080

Gene Structure 4400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G022230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCCGCTACCACCACCACCACCACTTCCACTGCTTTAATCAACACCTTGCAACCCTCTTCCCTTCAAAAGCTCTCAAGACCCAAATGGACAGTCACCAACCTTTCTCTCCCAACACCTCCGTCTCGCGTTTTGTTCGCAAATGGGTGCCGTTTAAAGACCCCCCTCACTCGTGTCTCCCCCTCTCATAGTTTCCCCACCGTCCCCGTCACCGTCAAGGACTACGAGTTTCTTGATGGTTCTACTGAGGTGGAATTGAGATTACAGCTGGGGGGACGAAACATCACAAACTCCAGAGACATTTTTGTGGATGCAAATGGCTCCTCTTTAATAATAAAAGTACAGCACTCTGGGTCTTTTGTCACACTTATGGAAACTAATCAACTGTTTGAAAAAATAAAGCCTGCTGAAACAATATGGTATATAGATGAAGATCAGCTAGTAATAAACTTGAAGAAGCAGGATCCAGATTTGAAATGGCCTGACATTGTTGAGTCCTGGGAGTCTTTGACCGTTGGATCTATGCAACTTCTGAAAGGAACGTCAATTTACATTGTTGGCGATTCAACTGAAATCAACCAGAAAGTGGCTCAAGAACTTGCGGTTGGTCTTGGATATACACCACTCACTACGAAGGAGTTGCTGGAAGCATTTGCCAAGCAGAGTGTTGATTCATGGCTGCTTGCTGAAGGTTCTGAACCTGTAGTAGAAGCAGAAAGTGCTATATTAGAAAGTTTAAGTAGTCATGCTAGGGCAGTAATTGGTACATTAGGAGGCCAGCATGGAGCTGCTGGAAGAGCTCATAAATGGCGCCATCTTTATGCAGGATTTACTATCTGGCTGTCACAAACTGATGCTACAGATGAAGATTCTGCAAAGGAAGAGGCCAGGAGTCATATCCAAGATGGTAGAGTAGCTTACTCAAATGCAGACGTTGTTGTCAAGCTACAGGGTTGGGATGTAGATCATGTTAAAACTGTGGCTCAGGCATGCTTGAGTGCACTTAAACAATTAGTTCTGTCAGACAAGAAGCTTCCAGGTAAGAAGAGCCTCTACATACGCTTGGGATGCCGAGGTGACTGGCCAAACATCAAACCTCCTGGGTGGGATCCCTCAACTGGAGATGATGCATCTCCAGGTGGATTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CS SKI

Protein Analysis

383

Amino Acids

41.85

Weight (kDa)

5.81

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35500
fragaria_vesca	FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010
malus_domestica	MD06G1026400.v1.1
prunus_persica	Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1
pyrus_communis	pycom06g02160
rosa_chinensis	RchiOBHm_Chr7g0211741
rosa_laevigata	RLG00000002972
rosa_multiflora	Rmu_sc0001875.1_g000021
rosa_roxburghii	Rroxscaffold_3G00247480
rosa_rugosa	Rorug07G0128200
rosa_samantha	Rh7AG260900 Rh7BG254400 Rh7CG277400 Rh7DG267500
rosa_wichuraiana	Rw7G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	938
AccB1I	GGYRCC	2 cut(s)	147, 810
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccII	CGCG	1 cut(s)	129
AciI	CCGC	2 cut(s)	6, 602
AclWI	GGATC	5 cut(s)	458, 471, 526, 1103, 1116
AcoI	YGGCCR	2 cut(s)	3, 1082
AcuI	CTGAAG	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	811
AfaI	GTAC	2 cut(s)	342, 766
AfiI	CCNNNNNNNGG	2 cut(s)	586, 1118
AgsI	TTSAA	6 cut(s)	68, 392, 454, 475, 567, 1148
AjnI	CCWGG	5 cut(s)	497, 887, 1036, 1099, 1135
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AluBI	AGCT	8 cut(s)	73, 268, 439, 788, 800, 917, 946, 1033
AluI	AGCT	8 cut(s)	73, 268, 439, 788, 800, 917, 946, 1033
Alw21I	GWGCWC	2 cut(s)	802, 1003
Alw26I	GTCTC	3 cut(s)	129, 181, 291
Alw44I	GTGCAC	1 cut(s)	999
AlwI	GGATC	5 cut(s)	458, 471, 526, 1103, 1116
AoxI	GGCC	5 cut(s)	3, 479, 775, 885, 1082
ApaLI	GTGCAC	1 cut(s)	999
ApeKI	GCWGC	2 cut(s)	679, 788
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AspLEI	GCGC	1 cut(s)	813
AsuHPI	GGTGA	3 cut(s)	88, 202, 1088
BaeGI	GKGCMC	1 cut(s)	1003
BalI	TGGCCA	1 cut(s)	1084
BamHI	GGATCC	2 cut(s)	463, 1108
BanI	GGYRCC	2 cut(s)	147, 810
BanII	GRGCYC	1 cut(s)	802
BarI	GAAGNNNNNNTAC	2 cut(s)	1037, 1069
BauI	CACGAG	1 cut(s)	171
Bbv12I	GWGCWC	2 cut(s)	802, 1003
BbvI	GCAGC	2 cut(s)	666, 775
BccI	CCATC	3 cut(s)	230, 822, 899
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	622, 656
BciT130I	CCWGG	5 cut(s)	499, 889, 1038, 1101, 1137
BcoDI	GTCTC	3 cut(s)	129, 181, 291
BfaI	CTAG	2 cut(s)	440, 750
BfmI	CTRYAG	3 cut(s)	702, 858, 947
BfoI	RGCGCY	1 cut(s)	814
BisI	GCNGC	3 cut(s)	6, 680, 789
BlsI	GCNGC	3 cut(s)	7, 681, 790
Bme1390I	CCNGG	5 cut(s)	499, 889, 1038, 1101, 1137
BmiI	GGNNCC	5 cut(s)	149, 322, 465, 812, 1110
BmrFI	CCNGG	5 cut(s)	499, 889, 1038, 1101, 1137
BmsI	GCATC	5 cut(s)	301, 844, 1058, 1117, 1139
BpmI	CTGGAG	3 cut(s)	277, 1119, 1140
Bpu10I	CCTNAGC	1 cut(s)	984
BpuEI	CTTGAG	3 cut(s)	61, 576, 1015
BsaBI	GATNNNNATC	2 cut(s)	432, 963
BsaHI	GRCGYC	1 cut(s)	811
BsaJI	CCNNGG	3 cut(s)	498, 1072, 1100
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 1118
Bse1I	ACTGG	2 cut(s)	1085, 1123
Bse8I	GATNNNNATC	2 cut(s)	432, 963
BseBI	CCWGG	5 cut(s)	499, 889, 1038, 1101, 1137
BseDI	CCNNGG	3 cut(s)	498, 1072, 1100
BseGI	GGATG	3 cut(s)	316, 964, 1073
BseJI	GATNNNNATC	2 cut(s)	432, 963
BseLI	CCNNNNNNNGG	2 cut(s)	586, 1118
BseMII	CTCAG	2 cut(s)	237, 998
BseNI	ACTGG	2 cut(s)	1085, 1123
BseRI	GAGGAG	1 cut(s)	313
BseSI	GKGCMC	1 cut(s)	1003
BseXI	GCAGC	2 cut(s)	666, 775
BseYI	CCCAGC	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	5 cut(s)	5, 481, 777, 887, 1084
BshNI	GGYRCC	2 cut(s)	147, 810
BsiHKAI	GWGCWC	2 cut(s)	802, 1003
BslFI	GGGAC	2 cut(s)	188, 288
BslI	CCNNNNNNNGG	2 cut(s)	586, 1118
BsmAI	GTCTC	3 cut(s)	129, 181, 291
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	2 cut(s)	188, 288
BsnI	GGCC	5 cut(s)	5, 481, 777, 887, 1084
Bsp1286I	GDGCHC	2 cut(s)	802, 1003
Bsp143I	GATC	5 cut(s)	433, 463, 518, 964, 1108
BspACI	CCGC	2 cut(s)	6, 602
BspANI	GGCC	5 cut(s)	5, 481, 777, 887, 1084
BspCNI	CTCAG	2 cut(s)	238, 997
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	5 cut(s)	149, 322, 465, 812, 1110
BspPI	GGATC	5 cut(s)	458, 471, 526, 1103, 1116
BspQI	GCTCTTC	2 cut(s)	790, 1040
BspT107I	GGYRCC	2 cut(s)	147, 810
BsrI	ACTGG	2 cut(s)	1085, 1123
BssECI	CCNNGG	3 cut(s)	498, 1072, 1100
BssMI	GATC	5 cut(s)	433, 463, 518, 964, 1108
BssNI	GRCGYC	1 cut(s)	811
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	5 cut(s)	499, 889, 1038, 1101, 1137
Bst4CI	ACNGT	6 cut(s)	94, 202, 214, 387, 514, 979
Bst6I	CTCTTC	4 cut(s)	64, 790, 876, 1040
BstACI	GRCGYC	1 cut(s)	811
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstC8I	GCNNGC	4 cut(s)	405, 684, 779, 991
BstDEI	CTNAG	2 cut(s)	246, 984
BstF5I	GGATG	3 cut(s)	316, 964, 1073
BstFNI	CGCG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	814
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	5 cut(s)	436, 466, 521, 967, 1111
BstMAI	GTCTC	3 cut(s)	129, 181, 291
BstMBI	GATC	5 cut(s)	433, 463, 518, 964, 1108
BstMWI	GCNNNNNNNGC	3 cut(s)	719, 797, 1068
BstNI	CCWGG	5 cut(s)	499, 889, 1038, 1101, 1137
BstNSI	RCATGY	1 cut(s)	993
BstSCI	CCNGG	5 cut(s)	497, 887, 1036, 1099, 1135
BstSFI	CTRYAG	3 cut(s)	702, 858, 947
BstSLI	GKGCMC	1 cut(s)	1003
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	666, 775
BstX2I	RGATCY	3 cut(s)	463, 518, 1108
BstYI	RGATCY	3 cut(s)	463, 518, 1108
BsuRI	GGCC	5 cut(s)	5, 481, 777, 887, 1084
BtsCI	GGATG	3 cut(s)	316, 964, 1073
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	4 cut(s)	405, 684, 779, 991
CfoI	GCGC	1 cut(s)	813
Csp6I	GTAC	2 cut(s)	341, 765
CviAII	CATG	5 cut(s)	675, 746, 782, 968, 990
CviQI	GTAC	2 cut(s)	341, 765
DdeI	CTNAG	2 cut(s)	246, 984
DinI	GGCGCC	1 cut(s)	812
DpnI	GATC	5 cut(s)	435, 465, 520, 966, 1110
DpnII	GATC	5 cut(s)	433, 463, 518, 964, 1108
DraI	TTTAAA	1 cut(s)	156
DrdI	GACNNNNNNGTC	1 cut(s)	938
DseDI	GACNNNNNNGTC	1 cut(s)	938
EaeI	YGGCCR	2 cut(s)	3, 1082
Eam1104I	CTCTTC	4 cut(s)	64, 790, 876, 1040
EarI	CTCTTC	4 cut(s)	64, 790, 876, 1040
Ecl136II	GAGCTC	1 cut(s)	800
Eco24I	GRGCYC	1 cut(s)	802
Eco53kI	GAGCTC	1 cut(s)	800
Eco57I	CTGAAG	1 cut(s)	708
EcoICRI	GAGCTC	1 cut(s)	800
EcoRII	CCWGG	5 cut(s)	497, 887, 1036, 1099, 1135
EcoT22I	ATGCAT	1 cut(s)	1132
EcoT38I	GRGCYC	1 cut(s)	802
EgeI	GGCGCC	1 cut(s)	812
EheI	GGCGCC	1 cut(s)	812
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	5 cut(s)	678, 749, 785, 971, 993
FaqI	GGGAC	2 cut(s)	188, 288
FatI	CATG	5 cut(s)	674, 745, 781, 967, 989
Fnu4HI	GCNGC	3 cut(s)	6, 680, 789
FokI	GGATG	3 cut(s)	323, 971, 1080
FriOI	GRGCYC	1 cut(s)	802
Fsp4HI	GCNGC	3 cut(s)	6, 680, 789
FspBI	CTAG	2 cut(s)	440, 750
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	3 cut(s)	6, 680, 789
GsaI	CCCAGC	1 cut(s)	272
GsuI	CTGGAG	3 cut(s)	277, 1119, 1140
HaeII	RGCGCY	1 cut(s)	814
HaeIII	GGCC	5 cut(s)	5, 481, 777, 887, 1084
HhaI	GCGC	1 cut(s)	813
Hin1I	GRCGYC	1 cut(s)	811
Hin1II	CATG	5 cut(s)	678, 749, 785, 971, 993
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	1031
HinfI	GANTC	6 cut(s)	494, 503, 563, 671, 869, 892
HphI	GGTGA	3 cut(s)	88, 202, 1088
Hpy166II	GTNNAC	1 cut(s)	1001
Hpy188I	TCNGA	3 cut(s)	534, 697, 1024
Hpy188III	TCNNGA	5 cut(s)	78, 233, 294, 467, 593
Hpy8I	GTNNAC	1 cut(s)	1001
HpyAV	CCTTC	3 cut(s)	74, 628, 683
HpyCH4III	ACNGT	6 cut(s)	94, 202, 214, 387, 514, 979
HpyCH4IV	ACGT	2 cut(s)	542, 933
HpyCH4V	TGCA	8 cut(s)	52, 314, 526, 824, 875, 929, 1001, 1130
HpyF10VI	GCNNNNNNNGC	3 cut(s)	719, 797, 1068
HpyF3I	CTNAG	2 cut(s)	246, 984
HpySE526I	ACGT	2 cut(s)	542, 933
Hsp92I	GRCGYC	1 cut(s)	811
Hsp92II	CATG	5 cut(s)	678, 749, 785, 971, 993
HspAI	GCGC	1 cut(s)	811
KasI	GGCGCC	1 cut(s)	810
Kzo9I	GATC	5 cut(s)	433, 463, 518, 964, 1108
LguI	GCTCTTC	2 cut(s)	790, 1040
LmnI	GCTCC	2 cut(s)	326, 785
Lsp1109I	GCAGC	2 cut(s)	666, 775
LweI	GCATC	5 cut(s)	301, 844, 1058, 1117, 1139
MaeI	CTAG	2 cut(s)	440, 750
MaeII	ACGT	2 cut(s)	542, 933
MaeIII	GTNAC	5 cut(s)	94, 208, 361, 843, 1076
MalI	GATC	5 cut(s)	435, 465, 520, 966, 1110
MboI	GATC	5 cut(s)	433, 463, 518, 964, 1108
MboII	GAAGA	7 cut(s)	51, 443, 466, 807, 878, 893, 1057
MflI	RGATCY	3 cut(s)	463, 518, 1108
MhlI	GDGCHC	2 cut(s)	802, 1003
MlsI	TGGCCA	1 cut(s)	1084
MluCI	AATT	4 cut(s)	254, 546, 759, 1010
MluNI	TGGCCA	1 cut(s)	1084
Mly113I	GGCGCC	1 cut(s)	811
MlyI	GAGTC	3 cut(s)	503, 512, 901
MmeI	TCCRAC	1 cut(s)	496
Mox20I	TGGCCA	1 cut(s)	1084
Mph1103I	ATGCAT	1 cut(s)	1132
MscI	TGGCCA	1 cut(s)	1084
MseI	TTAA	6 cut(s)	38, 155, 329, 737, 972, 1005
MslI	CAYNNNNRTG	3 cut(s)	305, 368, 819
Msp20I	TGGCCA	1 cut(s)	1084
MspA1I	CMGCKG	1 cut(s)	268
MspR9I	CCNGG	5 cut(s)	499, 889, 1038, 1101, 1137
MvaI	CCWGG	5 cut(s)	499, 889, 1038, 1101, 1137
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	3 cut(s)	719, 797, 1068
NarI	GGCGCC	1 cut(s)	811
NdeII	GATC	5 cut(s)	433, 463, 518, 964, 1108
NlaIII	CATG	5 cut(s)	678, 749, 785, 971, 993
NlaIV	GGNNCC	5 cut(s)	149, 322, 465, 812, 1110
NmeAIII	GCCGAG	1 cut(s)	1097
NmuCI	GTSAC	5 cut(s)	94, 208, 361, 843, 1076
NsiI	ATGCAT	1 cut(s)	1132
NspI	RCATGY	1 cut(s)	993
PaeI	GCATGC	1 cut(s)	993
PciSI	GCTCTTC	2 cut(s)	790, 1040
PfeI	GAWTC	3 cut(s)	563, 671, 869
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	3 cut(s)	7, 681, 790
PleI	GAGTC	3 cut(s)	502, 511, 900
PluTI	GGCGCC	1 cut(s)	814
PpsI	GAGTC	3 cut(s)	502, 511, 900
Psp124BI	GAGCTC	1 cut(s)	802
Psp6I	CCWGG	5 cut(s)	497, 887, 1036, 1099, 1135
PspFI	CCCAGC	1 cut(s)	268
PspGI	CCWGG	5 cut(s)	497, 887, 1036, 1099, 1135
PspN4I	GGNNCC	5 cut(s)	149, 322, 465, 812, 1110
PsuI	RGATCY	3 cut(s)	463, 518, 1108
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	2 cut(s)	342, 766
RsaNI	GTAC	2 cut(s)	341, 765
RseI	CAYNNNNRTG	3 cut(s)	305, 368, 819
SacI	GAGCTC	1 cut(s)	802
SapI	GCTCTTC	2 cut(s)	790, 1040
SaqAI	TTAA	6 cut(s)	38, 155, 329, 737, 972, 1005
SatI	GCNGC	3 cut(s)	6, 680, 789
Sau3AI	GATC	5 cut(s)	433, 463, 518, 964, 1108
SchI	GAGTC	3 cut(s)	503, 512, 901
ScrFI	CCNGG	5 cut(s)	499, 889, 1038, 1101, 1137
SduI	GDGCHC	2 cut(s)	802, 1003
SfaNI	GCATC	5 cut(s)	301, 844, 1058, 1117, 1139
SfcI	CTRYAG	3 cut(s)	702, 858, 947
SfoI	GGCGCC	1 cut(s)	812
SmiMI	CAYNNNNRTG	3 cut(s)	305, 368, 819
SmlI	CTYRAG	3 cut(s)	76, 591, 994
SmoI	CTYRAG	3 cut(s)	76, 591, 994
SphI	GCATGC	1 cut(s)	993
Sse9I	AATT	4 cut(s)	254, 546, 759, 1010
SsiI	CCGC	2 cut(s)	6, 602
SspDI	GGCGCC	1 cut(s)	810
SspMI	CTAG	2 cut(s)	440, 750
SstI	GAGCTC	1 cut(s)	802
StyD4I	CCNGG	5 cut(s)	497, 887, 1036, 1099, 1135
TaaI	ACNGT	6 cut(s)	94, 202, 214, 387, 514, 979
TaiI	ACGT	2 cut(s)	545, 936
TasI	AATT	4 cut(s)	254, 546, 759, 1010
TatI	WGTACW	1 cut(s)	340
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	563, 671, 869
Tru1I	TTAA	6 cut(s)	38, 155, 329, 737, 972, 1005
Tru9I	TTAA	6 cut(s)	38, 155, 329, 737, 972, 1005
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	5 cut(s)	94, 208, 361, 843, 1076
TseI	GCWGC	2 cut(s)	679, 788
Tsp45I	GTSAC	5 cut(s)	94, 208, 361, 843, 1076
TspDTI	ATGAA	3 cut(s)	444, 663, 879
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	37
Van91I	CCANNNNNTGG	1 cut(s)	586
VneI	GTGCAC	1 cut(s)	999
XceI	RCATGY	1 cut(s)	993
XcmI	CCANNNNNNNNNTGG	1 cut(s)	474
XspI	CTAG	2 cut(s)	440, 750
Zsp2I	ATGCAT	1 cut(s)	1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.