pycom06g02160
NAC Family

inactive shikimate kinase like 2

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
2601695 .. 2606911
5217 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02160.7

Sequence Viewer

Length: 1149 bp
ATGGTGGCCTCTGCAATTTCCGCCATGAATTCCACCATGGCTTTCAGTTTCTCCCAAAACCCGTTCAACAACTTCCGGAACCTCTGCAAACCACAATGGAGGAGGCCTATCTCACTCACACCCACCCACCTTTCCTTCCCAACTCCGACCAAAACTCGGCGCCCTTTACAGACTTCCACTCTCGTCTCCTCCTCCTCCTCCGTCCCCGCCGCCGTCGAGGACTACGAGTTTGTTGATGCTTCTTCTGAGGTGGAGCTGAGATTACAACTCGGGGGCCGAAATTTCGAAAGCTCGAGAGATATATTTGTGGATGCAGACGGCACCTCATTGACAATAAAAGTACAGCATTCTGGGTCTCTTATCACACTTGTGGAAACTAATCGTCTCTTTGATAAAATAAAGCCTTCTGAAACAATATGGTATATCGATGATGATCAGCTAGTCGTAAACTTGAAAAAGCACGATCCTGAATTGAAATGGCCTGATATTATGGAGTCCTGGGAGTCTCTGACAGCGGGATCCATGCAACTTTTGAAAGGAGCATCAATTTACATTGTTGGGGATTCAACTGAAATCAACCAAAAGGTGGCTCAAGAACTTGCAGTTGGTCTCGGATATACACCACTCAGTACGAAGGAGTTTATGGAATCATTTGCGAAGCAGACCATTGAATCATGGTTGCTTGCTGAAGGATCTGACTCTGTAGCAGAAGCAGAAAGTGCTGTATTACAAAGTTTAAGTAGTCATGTTCGGGCAGTAGTTGCAACATTAGGAGGGCAGCACGGAGCAGCAGGAAGGGCTGATAAATGGCGTCATCTTTATGCGGGTTTCACTGTCTGGGTGTCCCAAACTGAAGCTACAGATGAAGATTCAGCAAAGGAAGAGGCTAGGAGTCATATTAAAGATGGCAGACTAGCTTACTCAAACGCCGATGTTGTTGTCAAACTACAAGGTTGGGATGCAGTTCATGCTAAAAGTGTGGCTCAGGGATGCTTGAGTGCCCTTAAACAATTAATTCTATCGGACAAGAAACTTCCAAGTAAGAAGAGCCTTTACATAAGGTTGGGATGCCGAGGTGACTGGCCAAACATCAAGCCTCCTGGATGGGATCCGTCAGCTGGAGATGATGTTTCTCTCAATGGATTGTAA
Functional Annotation

Protein Analysis

383

Amino Acids

41.89

Weight (kDa)

5.69

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 159, 320
AccB7I CCANNNNNTGG 1 cut(s) 586
AccIII TCCGGA 1 cut(s) 75
AciI CCGC 5 cut(s) 21, 207, 210, 515, 824
AclWI GGATC 6 cut(s) 458, 513, 526, 700, 1103, 1116
AcoI YGGCCR 1 cut(s) 1082
AcsI RAATTY 2 cut(s) 28, 280
AcuI CTGAAG 2 cut(s) 708, 873
AcyI GRCGYC 2 cut(s) 160, 811
AfaI GTAC 2 cut(s) 342, 631
AfiI CCNNNNNNNGG 3 cut(s) 156, 586, 1118
AgsI TTSAA 6 cut(s) 67, 454, 475, 535, 567, 671
AjnI CCWGG 2 cut(s) 497, 1099
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AleI CACNNNNGTG 1 cut(s) 368
AluBI AGCT 6 cut(s) 256, 291, 439, 857, 917, 1118
AluI AGCT 6 cut(s) 256, 291, 439, 857, 917, 1118
Alw26I GTCTC 5 cut(s) 190, 360, 389, 510, 614
AlwI GGATC 6 cut(s) 458, 513, 526, 700, 1103, 1116
Ama87I CYCGRG 2 cut(s) 269, 292
Aor13HI TCCGGA 1 cut(s) 75
AoxI GGCC 5 cut(s) 6, 104, 274, 479, 1082
ApeKI GCWGC 2 cut(s) 778, 788
ApoI RAATTY 2 cut(s) 28, 280
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AseI ATTAAT 1 cut(s) 1013
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 1088
AsuII TTCGAA 1 cut(s) 285
AvaI CYCGRG 2 cut(s) 269, 292
BaeGI GKGCMC 1 cut(s) 1003
BalI TGGCCA 1 cut(s) 1084
BamHI GGATCC 2 cut(s) 518, 1108
BanI GGYRCC 2 cut(s) 159, 320
BarI GAAGNNNNNNTAC 2 cut(s) 1037, 1069
BbvI GCAGC 2 cut(s) 790, 800
BccI CCATC 2 cut(s) 899, 1098
BceAI ACGGC 2 cut(s) 197, 334
BciT130I CCWGG 2 cut(s) 499, 1101
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 5 cut(s) 190, 360, 389, 510, 614
BfaI CTAG 3 cut(s) 440, 888, 914
BfmI CTRYAG 2 cut(s) 702, 858
BfoI RGCGCY 1 cut(s) 163
BisI GCNGC 3 cut(s) 210, 779, 789
BlsI GCNGC 3 cut(s) 211, 780, 790
Bme1390I CCNGG 2 cut(s) 499, 1101
BmeT110I CYCGRG 2 cut(s) 269, 292
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 6 cut(s) 80, 161, 275, 322, 520, 1110
BmrFI CCNGG 2 cut(s) 499, 1101
BmsI GCATC 6 cut(s) 226, 301, 551, 949, 980, 1058
BpmI CTGGAG 1 cut(s) 1140
Bpu10I CCTNAGC 1 cut(s) 984
Bpu14I TTCGAA 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 576, 1015
Bsa29I ATCGAT 1 cut(s) 426
BsaBI GATNNNNATC 1 cut(s) 432
BsaHI GRCGYC 2 cut(s) 160, 811
BsaI GGTCTC 2 cut(s) 360, 614
BsaJI CCNNGG 3 cut(s) 36, 498, 1072
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 1113, 1143
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 586, 1118
Bse1I ACTGG 1 cut(s) 1085
Bse8I GATNNNNATC 1 cut(s) 432
BseAI TCCGGA 1 cut(s) 75
BseBI CCWGG 2 cut(s) 499, 1101
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 3 cut(s) 36, 498, 1072
BseGI GGATG 5 cut(s) 316, 964, 995, 1073, 1109
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 3 cut(s) 156, 586, 1118
BseMII CTCAG 4 cut(s) 237, 248, 640, 998
BseNI ACTGG 1 cut(s) 1085
BseRI GAGGAG 5 cut(s) 115, 178, 181, 184, 187
BseSI GKGCMC 1 cut(s) 1003
BseXI GCAGC 2 cut(s) 790, 800
BshFI GGCC 5 cut(s) 8, 106, 276, 481, 1084
BshNI GGYRCC 2 cut(s) 159, 320
BshVI ATCGAT 1 cut(s) 426
BsiHKCI CYCGRG 2 cut(s) 269, 292
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 2 cut(s) 188, 829
BslI CCNNNNNNNGG 3 cut(s) 156, 586, 1118
BsmAI GTCTC 5 cut(s) 190, 360, 389, 510, 614
BsmBI CGTCTC 2 cut(s) 190, 389
BsmFI GGGAC 2 cut(s) 188, 829
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 5 cut(s) 8, 106, 276, 481, 1084
Bso31I GGTCTC 2 cut(s) 360, 614
BsoBI CYCGRG 2 cut(s) 269, 292
Bsp119I TTCGAA 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 1003
Bsp13I TCCGGA 1 cut(s) 75
Bsp143I GATC 5 cut(s) 433, 463, 518, 692, 1108
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 5 cut(s) 21, 207, 210, 515, 824
BspANI GGCC 5 cut(s) 8, 106, 276, 481, 1084
BspCNI CTCAG 4 cut(s) 238, 249, 639, 997
BspDI ATCGAT 1 cut(s) 426
BspEI TCCGGA 1 cut(s) 75
BspLI GGNNCC 6 cut(s) 80, 161, 275, 322, 520, 1110
BspPI GGATC 6 cut(s) 458, 513, 526, 700, 1103, 1116
BspQI GCTCTTC 1 cut(s) 1040
BspT104I TTCGAA 1 cut(s) 285
BspT107I GGYRCC 2 cut(s) 159, 320
BspTNI GGTCTC 2 cut(s) 360, 614
BsrI ACTGG 1 cut(s) 1085
BssECI CCNNGG 3 cut(s) 36, 498, 1072
BssMI GATC 5 cut(s) 433, 463, 518, 692, 1108
BssNI GRCGYC 2 cut(s) 160, 811
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 499, 1101
Bst4CI ACNGT 1 cut(s) 835
Bst6I CTCTTC 2 cut(s) 876, 1040
BstACI GRCGYC 2 cut(s) 160, 811
BstAPI GCANNNNNTGC 3 cut(s) 719, 761, 968
BstBI TTCGAA 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 684
BstDEI CTNAG 4 cut(s) 246, 257, 626, 984
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 5 cut(s) 316, 964, 995, 1073, 1109
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 5 cut(s) 436, 466, 521, 695, 1111
BstMAI GTCTC 5 cut(s) 190, 360, 389, 510, 614
BstMBI GATC 5 cut(s) 433, 463, 518, 692, 1108
BstMWI GCNNNNNNNGC 5 cut(s) 20, 719, 761, 797, 968
BstNI CCWGG 2 cut(s) 499, 1101
BstSCI CCNGG 2 cut(s) 497, 1099
BstSFI CTRYAG 2 cut(s) 702, 858
BstSLI GKGCMC 1 cut(s) 1003
BstV1I GCAGC 2 cut(s) 790, 800
BstX2I RGATCY 3 cut(s) 518, 692, 1108
BstYI RGATCY 3 cut(s) 518, 692, 1108
Bsu15I ATCGAT 1 cut(s) 426
BsuRI GGCC 5 cut(s) 8, 106, 276, 481, 1084
BsuTUI ATCGAT 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 5 cut(s) 316, 964, 995, 1073, 1109
BtsIMutI CAGTG 1 cut(s) 831
Cac8I GCNNGC 1 cut(s) 684
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 274
ClaI ATCGAT 1 cut(s) 426
CseI GACGC 1 cut(s) 800
Csp6I GTAC 2 cut(s) 341, 630
CviAII CATG 6 cut(s) 25, 37, 523, 675, 746, 968
CviQI GTAC 2 cut(s) 341, 630
DdeI CTNAG 4 cut(s) 246, 257, 626, 984
DinI GGCGCC 1 cut(s) 161
DpnI GATC 5 cut(s) 435, 465, 520, 694, 1110
DpnII GATC 5 cut(s) 433, 463, 518, 692, 1108
EaeI YGGCCR 1 cut(s) 1082
Eam1104I CTCTTC 2 cut(s) 876, 1040
EarI CTCTTC 2 cut(s) 876, 1040
EciI GGCGGA 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 106
Eco31I GGTCTC 2 cut(s) 360, 614
Eco57I CTGAAG 2 cut(s) 708, 873
Eco88I CYCGRG 2 cut(s) 269, 292
EcoRI GAATTC 1 cut(s) 28
EcoRII CCWGG 2 cut(s) 497, 1099
EcoT14I CCWWGG 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 161
EheI GGCGCC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 36
Esp3I CGTCTC 2 cut(s) 190, 389
FaeI CATG 6 cut(s) 28, 40, 526, 678, 749, 971
FaqI GGGAC 2 cut(s) 188, 829
FatI CATG 6 cut(s) 24, 36, 522, 674, 745, 967
FauI CCCGC 3 cut(s) 214, 508, 817
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 210, 779, 789
FokI GGATG 5 cut(s) 323, 971, 1002, 1080, 1116
Fsp4HI GCNGC 3 cut(s) 210, 779, 789
FspBI CTAG 3 cut(s) 440, 888, 914
GlaI GCGC 1 cut(s) 161
GluI GCNGC 3 cut(s) 210, 779, 789
GsuI CTGGAG 1 cut(s) 1140
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 5 cut(s) 8, 106, 276, 481, 1084
HapII CCGG 1 cut(s) 76
HgaI GACGC 1 cut(s) 800
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 2 cut(s) 160, 811
Hin1II CATG 6 cut(s) 28, 40, 526, 678, 749, 971
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 8 cut(s) 494, 503, 563, 647, 671, 698, 869, 892
HpaII CCGG 1 cut(s) 76
HphI GGTGA 1 cut(s) 1088
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 7 cut(s) 147, 247, 409, 510, 614, 697, 1024
Hpy188III TCNNGA 4 cut(s) 76, 294, 467, 593
Hpy8I GTNNAC 1 cut(s) 448
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 5 cut(s) 145, 414, 628, 683, 789
HpyCH4III ACNGT 1 cut(s) 835
HpyCH4V TGCA 7 cut(s) 14, 87, 314, 526, 602, 764, 962
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 719, 761, 797, 968
HpyF3I CTNAG 4 cut(s) 246, 257, 626, 984
Hsp92I GRCGYC 2 cut(s) 160, 811
Hsp92II CATG 6 cut(s) 28, 40, 526, 678, 749, 971
HspAI GCGC 1 cut(s) 160
KasI GGCGCC 1 cut(s) 159
Kpn2I TCCGGA 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 5 cut(s) 433, 463, 518, 692, 1108
LguI GCTCTTC 1 cut(s) 1040
LmnI GCTCC 3 cut(s) 253, 539, 785
Lsp1109I GCAGC 2 cut(s) 790, 800
LweI GCATC 6 cut(s) 226, 301, 551, 949, 980, 1058
MaeI CTAG 3 cut(s) 440, 888, 914
MaeIII GTNAC 1 cut(s) 1076
MalI GATC 5 cut(s) 435, 465, 520, 694, 1110
MboI GATC 5 cut(s) 433, 463, 518, 692, 1108
MboII GAAGA 4 cut(s) 234, 878, 893, 1057
MflI RGATCY 3 cut(s) 518, 692, 1108
MhlI GDGCHC 1 cut(s) 1003
MlsI TGGCCA 1 cut(s) 1084
MluCI AATT 7 cut(s) 15, 28, 280, 470, 546, 1010, 1014
MluNI TGGCCA 1 cut(s) 1084
Mly113I GGCGCC 1 cut(s) 160
MlyI GAGTC 4 cut(s) 503, 512, 692, 901
MmeI TCCRAC 1 cut(s) 170
Mox20I TGGCCA 1 cut(s) 1084
MroI TCCGGA 1 cut(s) 75
MscI TGGCCA 1 cut(s) 1084
MseI TTAA 4 cut(s) 737, 900, 1005, 1013
MslI CAYNNNNRTG 2 cut(s) 368, 819
Msp20I TGGCCA 1 cut(s) 1084
MspA1I CMGCKG 2 cut(s) 515, 1118
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 2 cut(s) 499, 1101
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 2 cut(s) 499, 1101
MwoI GCNNNNNNNGC 5 cut(s) 20, 719, 761, 797, 968
NarI GGCGCC 1 cut(s) 160
NcoI CCATGG 1 cut(s) 36
NdeII GATC 5 cut(s) 433, 463, 518, 692, 1108
NlaIII CATG 6 cut(s) 28, 40, 526, 678, 749, 971
NlaIV GGNNCC 6 cut(s) 80, 161, 275, 322, 520, 1110
NmeAIII GCCGAG 2 cut(s) 136, 1097
NmuCI GTSAC 1 cut(s) 1076
NspV TTCGAA 1 cut(s) 285
OliI CACNNNNGTG 1 cut(s) 368
PaeR7I CTCGAG 1 cut(s) 292
PceI AGGCCT 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 1040
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 4 cut(s) 563, 647, 671, 869
PflMI CCANNNNNTGG 1 cut(s) 586
PfoI TCCNGGA 1 cut(s) 1099
PkrI GCNGC 3 cut(s) 211, 780, 790
PleI GAGTC 4 cut(s) 502, 511, 692, 900
PluTI GGCGCC 1 cut(s) 163
PpsI GAGTC 4 cut(s) 502, 511, 692, 900
PshBI ATTAAT 1 cut(s) 1013
Psp6I CCWGG 2 cut(s) 497, 1099
PspGI CCWGG 2 cut(s) 497, 1099
PspN4I GGNNCC 6 cut(s) 80, 161, 275, 322, 520, 1110
PspPI GGNCC 1 cut(s) 274
PsuI RGATCY 3 cut(s) 518, 692, 1108
PvuII CAGCTG 1 cut(s) 1118
RsaI GTAC 2 cut(s) 342, 631
RsaNI GTAC 2 cut(s) 341, 630
RseI CAYNNNNRTG 2 cut(s) 368, 819
SapI GCTCTTC 1 cut(s) 1040
SaqAI TTAA 4 cut(s) 737, 900, 1005, 1013
SatI GCNGC 3 cut(s) 210, 779, 789
Sau3AI GATC 5 cut(s) 433, 463, 518, 692, 1108
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 4 cut(s) 503, 512, 692, 901
ScrFI CCNGG 2 cut(s) 499, 1101
SduI GDGCHC 1 cut(s) 1003
SfaNI GCATC 6 cut(s) 226, 301, 551, 949, 980, 1058
SfcI CTRYAG 2 cut(s) 702, 858
SfoI GGCGCC 1 cut(s) 161
Sfr274I CTCGAG 1 cut(s) 292
SfuI TTCGAA 1 cut(s) 285
SlaI CTCGAG 1 cut(s) 292
SmiMI CAYNNNNRTG 2 cut(s) 368, 819
SmlI CTYRAG 3 cut(s) 292, 591, 994
SmoI CTYRAG 3 cut(s) 292, 591, 994
Sse9I AATT 7 cut(s) 15, 28, 280, 470, 546, 1010, 1014
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 5 cut(s) 21, 207, 210, 515, 824
SspDI GGCGCC 1 cut(s) 159
SspMI CTAG 3 cut(s) 440, 888, 914
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 2 cut(s) 497, 1099
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 835
TaqI TCGA 4 cut(s) 216, 285, 293, 426
TasI AATT 7 cut(s) 15, 28, 280, 470, 546, 1010, 1014
TatI WGTACW 1 cut(s) 340
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 4 cut(s) 563, 647, 671, 869
Tru1I TTAA 4 cut(s) 737, 900, 1005, 1013
Tru9I TTAA 4 cut(s) 737, 900, 1005, 1013
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 1 cut(s) 1076
TseI GCWGC 2 cut(s) 778, 788
Tsp45I GTSAC 1 cut(s) 1076
TspDTI ATGAA 3 cut(s) 41, 879, 956
TspGWI ACGGA 3 cut(s) 190, 798, 1101
TspRI CASTG 1 cut(s) 838
Van91I CCANNNNNTGG 1 cut(s) 586
VspI ATTAAT 1 cut(s) 1013
XapI RAATTY 2 cut(s) 28, 280
XhoI CTCGAG 1 cut(s) 292
XspI CTAG 3 cut(s) 440, 888, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.