Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004803

Physical Location & Seq

Genomic Coordinates Forward (+)

27990319 .. 27999802

Gene Structure 9484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG277400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGCTTTTGGACCCGCGGGGCAAATGACAACCTCTGCCAACAGCCCCGTTCTATTCTTCTTGTAACGGCTCACTTTGAGTCCTCATCCTCGTCTTATCCAACTATCCCTGTTCAATTTCAAGCAGAAATGGCCGCTACCACCACCACTTCCACTGCTTTAATCAACACCTTGCAACCCTCTTCCCTTCAAAAGCTCTCAAGACCCAAATGGACAGTCACCAACCTTTCTCTCCCAACACCTCCGTCTCGCGTTTTGTTCGCAAATGGGTGCCGTTTAAAGACCCCCCTCACTCGTGTCTCCTCCTCTCAAAGTTTCCCCACCGTCCCCGTCACCGTCAAGGACTACGAGTTTCTTGATGGTTCTACTGAGGTGGAATTGAGATTACAGCTGGGGGGACGAAACATCACAAACTCCAGAGACATTTTTGTGGATGCAAATGGCTCCTCTTTAATAATAAAAGTACAGCACTCTGGGTCTTTTGTCACACTTATGGAAACTAATCAACTGTTTGAAAAAATAAAGCCTGCTGAAACAATATGGTATATAGATGAAGATCAGCTAGTAATAAACTTGAAGAAGCAGGATCCAGATTTGAAATGGCCTGACATTGTTGAGTCCTGGGAGTCTTTGACCGTTGGATCTATGCAACTTCTGAAAGCAACGTCAATTTACATTGTTGGCGATTCAACTGAAATCAACCAGAAAGTGGCTCAAGAACTTGCAGTTGGTCTTGGATATACACCACTCACTACGAAGGAGTTGCTGGAAGCATTTGCCAAGCAGAGTGTTGATTCATGGCTGCTTGCTGAAGGTTCTGAATCTGTAGTAGAAGCAGAAAGTGCTATATTAGAAAGTTTAAGTAGTCATGCTAGGGCAGTAATCGGTACATTAGGAGGCCAGCATGGAGCTGCTGGAAGAGCTCATAAATGGCGCCATCTTTATGCAGGATTTACTATCTGGCTGTCACAAACTGATGCTACAGGTAACCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CS SKI

Protein Analysis

332

Amino Acids

36.44

Weight (kDa)

5.58

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35500
fragaria_vesca	FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010
malus_domestica	MD06G1026400.v1.1
prunus_persica	Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1
pyrus_communis	pycom06g02160
rosa_chinensis	RchiOBHm_Chr7g0211741
rosa_laevigata	RLG00000002972
rosa_multiflora	Rmu_sc0001875.1_g000021
rosa_roxburghii	Rroxscaffold_3G00247480
rosa_rugosa	Rorug07G0128200
rosa_samantha	Rh7AG260900 Rh7BG254400 Rh7CG277400 Rh7DG267500
rosa_wichuraiana	Rw7G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	270, 933
AccB7I	CCANNNNNTGG	1 cut(s)	709
AccII	CGCG	2 cut(s)	18, 252
AciI	CCGC	3 cut(s)	16, 18, 135
AclWI	GGATC	3 cut(s)	581, 594, 649
AcoI	YGGCCR	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	831
AcyI	GRCGYC	1 cut(s)	934
AfaI	GTAC	2 cut(s)	465, 889
AfiI	CCNNNNNNNGG	1 cut(s)	709
AgsI	TTSAA	7 cut(s)	116, 122, 191, 515, 577, 598, 690
AjnI	CCWGG	1 cut(s)	620
AjuI	GAANNNNNNNTTGG	2 cut(s)	711, 743
AluBI	AGCT	6 cut(s)	6, 196, 391, 562, 911, 923
AluI	AGCT	6 cut(s)	6, 196, 391, 562, 911, 923
Alw21I	GWGCWC	1 cut(s)	925
Alw26I	GTCTC	3 cut(s)	252, 304, 414
AlwI	GGATC	3 cut(s)	581, 594, 649
AoxI	GGCC	3 cut(s)	132, 602, 898
ApeKI	GCWGC	2 cut(s)	802, 911
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AspLEI	GCGC	1 cut(s)	936
AspS9I	GGNCC	1 cut(s)	12
AsuHPI	GGTGA	2 cut(s)	211, 325
AvaII	GGWCC	1 cut(s)	12
BamHI	GGATCC	1 cut(s)	586
BanI	GGYRCC	2 cut(s)	270, 933
BanII	GRGCYC	1 cut(s)	925
BauI	CACGAG	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	925
BbvI	GCAGC	2 cut(s)	789, 898
BccI	CCATC	2 cut(s)	353, 945
BceAI	ACGGC	2 cut(s)	84, 258
BcgI	CGANNNNNNTGC	2 cut(s)	745, 779
BciT130I	CCWGG	1 cut(s)	622
BcoDI	GTCTC	3 cut(s)	252, 304, 414
BfaI	CTAG	2 cut(s)	563, 873
BfmI	CTRYAG	2 cut(s)	825, 981
BfoI	RGCGCY	1 cut(s)	937
BisI	GCNGC	3 cut(s)	135, 803, 912
BlsI	GCNGC	3 cut(s)	136, 804, 913
Bme1390I	CCNGG	1 cut(s)	622
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	5 cut(s)	14, 272, 445, 588, 935
BmrFI	CCNGG	1 cut(s)	622
BmsI	GCATC	2 cut(s)	424, 967
BpmI	CTGGAG	1 cut(s)	400
BpuEI	CTTGAG	2 cut(s)	184, 699
BsaBI	GATNNNNATC	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	934
BsaJI	CCNNGG	2 cut(s)	16, 621
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	1 cut(s)	622
BseDI	CCNNGG	2 cut(s)	16, 621
BseGI	GGATG	2 cut(s)	86, 439
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMII	CTCAG	1 cut(s)	360
BseRI	GAGGAG	3 cut(s)	292, 295, 436
BseXI	GCAGC	2 cut(s)	789, 898
BseYI	CCCAGC	1 cut(s)	391
Bsh1236I	CGCG	2 cut(s)	18, 252
BshFI	GGCC	3 cut(s)	134, 604, 900
BshNI	GGYRCC	2 cut(s)	270, 933
BsiHKAI	GWGCWC	1 cut(s)	925
BslFI	GGGAC	2 cut(s)	311, 411
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	3 cut(s)	252, 304, 414
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	2 cut(s)	311, 411
BsnI	GGCC	3 cut(s)	134, 604, 900
Bsp1286I	GDGCHC	1 cut(s)	925
Bsp143I	GATC	3 cut(s)	556, 586, 641
BspACI	CCGC	3 cut(s)	16, 18, 135
BspANI	GGCC	3 cut(s)	134, 604, 900
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	2 cut(s)	18, 252
BspLI	GGNNCC	5 cut(s)	14, 272, 445, 588, 935
BspPI	GGATC	3 cut(s)	581, 594, 649
BspQI	GCTCTTC	1 cut(s)	913
BspT107I	GGYRCC	2 cut(s)	270, 933
BssECI	CCNNGG	2 cut(s)	16, 621
BssMI	GATC	3 cut(s)	556, 586, 641
BssNI	GRCGYC	1 cut(s)	934
BssSI	CACGAG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	622
Bst4CI	ACNGT	5 cut(s)	217, 325, 337, 510, 637
Bst6I	CTCTTC	2 cut(s)	187, 913
BstACI	GRCGYC	1 cut(s)	934
BstAPI	GCANNNNNTGC	1 cut(s)	842
BstC8I	GCNNGC	3 cut(s)	528, 807, 902
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	16
BstEII	GGTNACC	1 cut(s)	986
BstF5I	GGATG	2 cut(s)	86, 439
BstFNI	CGCG	2 cut(s)	18, 252
BstH2I	RGCGCY	1 cut(s)	937
BstHHI	GCGC	1 cut(s)	936
BstKTI	GATC	3 cut(s)	559, 589, 644
BstMAI	GTCTC	3 cut(s)	252, 304, 414
BstMBI	GATC	3 cut(s)	556, 586, 641
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 842, 920
BstNI	CCWGG	1 cut(s)	622
BstPI	GGTNACC	1 cut(s)	986
BstSCI	CCNGG	1 cut(s)	620
BstSFI	CTRYAG	2 cut(s)	825, 981
BstUI	CGCG	2 cut(s)	18, 252
BstV1I	GCAGC	2 cut(s)	789, 898
BstX2I	RGATCY	2 cut(s)	586, 641
BstYI	RGATCY	2 cut(s)	586, 641
BsuRI	GGCC	3 cut(s)	134, 604, 900
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	86, 439
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	528, 807, 902
CfoI	GCGC	1 cut(s)	936
Cfr13I	GGNCC	1 cut(s)	12
Cfr42I	CCGCGG	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	464, 888
CviAII	CATG	3 cut(s)	798, 869, 905
CviQI	GTAC	2 cut(s)	464, 888
DdeI	CTNAG	1 cut(s)	369
DinI	GGCGCC	1 cut(s)	935
DpnI	GATC	3 cut(s)	558, 588, 643
DpnII	GATC	3 cut(s)	556, 586, 641
DraI	TTTAAA	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	187, 913
EarI	CTCTTC	2 cut(s)	187, 913
Ecl136II	GAGCTC	1 cut(s)	923
Eco24I	GRGCYC	1 cut(s)	925
Eco47I	GGWCC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	923
Eco57I	CTGAAG	1 cut(s)	831
Eco91I	GGTNACC	1 cut(s)	986
EcoICRI	GAGCTC	1 cut(s)	923
EcoO65I	GGTNACC	1 cut(s)	986
EcoRII	CCWGG	1 cut(s)	620
EcoT38I	GRGCYC	1 cut(s)	925
EgeI	GGCGCC	1 cut(s)	935
EheI	GGCGCC	1 cut(s)	935
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	3 cut(s)	801, 872, 908
FaqI	GGGAC	2 cut(s)	311, 411
FatI	CATG	3 cut(s)	797, 868, 904
FauI	CCCGC	2 cut(s)	11, 23
Fnu4HI	GCNGC	3 cut(s)	135, 803, 912
FokI	GGATG	2 cut(s)	73, 446
FriOI	GRGCYC	1 cut(s)	925
Fsp4HI	GCNGC	3 cut(s)	135, 803, 912
FspBI	CTAG	2 cut(s)	563, 873
GlaI	GCGC	1 cut(s)	935
GluI	GCNGC	3 cut(s)	135, 803, 912
GsaI	CCCAGC	1 cut(s)	395
GsuI	CTGGAG	1 cut(s)	400
HaeII	RGCGCY	1 cut(s)	937
HaeIII	GGCC	3 cut(s)	134, 604, 900
HhaI	GCGC	1 cut(s)	936
Hin1I	GRCGYC	1 cut(s)	934
Hin1II	CATG	3 cut(s)	801, 872, 908
Hin6I	GCGC	1 cut(s)	934
HinP1I	GCGC	1 cut(s)	934
HinfI	GANTC	6 cut(s)	80, 617, 626, 686, 794, 821
HphI	GGTGA	2 cut(s)	211, 325
Hpy188I	TCNGA	2 cut(s)	657, 820
Hpy188III	TCNNGA	5 cut(s)	201, 356, 417, 590, 716
HpyAV	CCTTC	3 cut(s)	197, 751, 806
HpyCH4III	ACNGT	5 cut(s)	217, 325, 337, 510, 637
HpyCH4IV	ACGT	1 cut(s)	665
HpyCH4V	TGCA	5 cut(s)	175, 437, 649, 725, 947
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 842, 920
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	665
Hsp92I	GRCGYC	1 cut(s)	934
Hsp92II	CATG	3 cut(s)	801, 872, 908
HspAI	GCGC	1 cut(s)	934
KasI	GGCGCC	1 cut(s)	933
KspI	CCGCGG	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	556, 586, 641
LguI	GCTCTTC	1 cut(s)	913
LmnI	GCTCC	2 cut(s)	449, 908
Lsp1109I	GCAGC	2 cut(s)	789, 898
LweI	GCATC	2 cut(s)	424, 967
MaeI	CTAG	2 cut(s)	563, 873
MaeII	ACGT	1 cut(s)	665
MaeIII	GTNAC	6 cut(s)	64, 217, 331, 484, 966, 986
MalI	GATC	3 cut(s)	558, 588, 643
MboI	GATC	3 cut(s)	556, 586, 641
MboII	GAAGA	5 cut(s)	50, 174, 566, 589, 930
MflI	RGATCY	2 cut(s)	586, 641
MhlI	GDGCHC	1 cut(s)	925
MluCI	AATT	3 cut(s)	116, 377, 669
Mly113I	GGCGCC	1 cut(s)	934
MlyI	GAGTC	3 cut(s)	89, 626, 635
MmeI	TCCRAC	2 cut(s)	125, 619
MseI	TTAA	4 cut(s)	161, 278, 452, 860
MslI	CAYNNNNRTG	3 cut(s)	428, 491, 942
MspA1I	CMGCKG	2 cut(s)	18, 391
MspR9I	CCNGG	1 cut(s)	622
MvaI	CCWGG	1 cut(s)	622
MvnI	CGCG	2 cut(s)	18, 252
MwoI	GCNNNNNNNGC	3 cut(s)	131, 842, 920
NarI	GGCGCC	1 cut(s)	934
NdeII	GATC	3 cut(s)	556, 586, 641
NlaIII	CATG	3 cut(s)	801, 872, 908
NlaIV	GGNNCC	5 cut(s)	14, 272, 445, 588, 935
NmuCI	GTSAC	4 cut(s)	217, 331, 484, 966
PciSI	GCTCTTC	1 cut(s)	913
PfeI	GAWTC	3 cut(s)	686, 794, 821
PflMI	CCANNNNNTGG	1 cut(s)	709
PkrI	GCNGC	3 cut(s)	136, 804, 913
PleI	GAGTC	3 cut(s)	88, 625, 634
PluTI	GGCGCC	1 cut(s)	937
PpsI	GAGTC	3 cut(s)	88, 625, 634
Psp124BI	GAGCTC	1 cut(s)	925
Psp6I	CCWGG	1 cut(s)	620
PspEI	GGTNACC	1 cut(s)	986
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	620
PspN4I	GGNNCC	5 cut(s)	14, 272, 445, 588, 935
PspPI	GGNCC	1 cut(s)	12
PsuI	RGATCY	2 cut(s)	586, 641
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	2 cut(s)	465, 889
RsaNI	GTAC	2 cut(s)	464, 888
RseI	CAYNNNNRTG	3 cut(s)	428, 491, 942
SacI	GAGCTC	1 cut(s)	925
SacII	CCGCGG	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	913
SaqAI	TTAA	4 cut(s)	161, 278, 452, 860
SatI	GCNGC	3 cut(s)	135, 803, 912
Sau3AI	GATC	3 cut(s)	556, 586, 641
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	3 cut(s)	89, 626, 635
ScrFI	CCNGG	1 cut(s)	622
SduI	GDGCHC	1 cut(s)	925
SfaNI	GCATC	2 cut(s)	424, 967
SfcI	CTRYAG	2 cut(s)	825, 981
SfoI	GGCGCC	1 cut(s)	935
Sfr303I	CCGCGG	1 cut(s)	19
SgrBI	CCGCGG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	3 cut(s)	428, 491, 942
SmlI	CTYRAG	2 cut(s)	199, 714
SmoI	CTYRAG	2 cut(s)	199, 714
Sse9I	AATT	3 cut(s)	116, 377, 669
SsiI	CCGC	3 cut(s)	16, 18, 135
SspDI	GGCGCC	1 cut(s)	933
SspMI	CTAG	2 cut(s)	563, 873
SstI	GAGCTC	1 cut(s)	925
StyD4I	CCNGG	1 cut(s)	620
TaaI	ACNGT	5 cut(s)	217, 325, 337, 510, 637
TaiI	ACGT	1 cut(s)	668
TasI	AATT	3 cut(s)	116, 377, 669
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	3 cut(s)	686, 794, 821
Tru1I	TTAA	4 cut(s)	161, 278, 452, 860
Tru9I	TTAA	4 cut(s)	161, 278, 452, 860
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	4 cut(s)	217, 331, 484, 966
TseI	GCWGC	2 cut(s)	802, 911
Tsp45I	GTSAC	4 cut(s)	217, 331, 484, 966
TspDTI	ATGAA	2 cut(s)	567, 786
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	12
XcmI	CCANNNNNNNNNTGG	1 cut(s)	597
XspI	CTAG	2 cut(s)	563, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.