Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001875.1

Orthogroup ID

OG0004803

Physical Location & Seq

Genomic Coordinates Forward (+)

143716 .. 147558

Gene Structure 3843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001875.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atggacagtcaccaacctttctctcccaacacttccactgccttaatcaacaccttgcaaccctcttcccttcaaaagctctcaagacccaaatggacagtcaccaacctttctctcccaacacctccgtctcgcgttttgttcgcaaatgggtgccgtttaaagacccccctcactcgtgtctcctcctctcaaagtttccccaccgtccccgtcaccgtcaaggactacgagtttcttgatgattctactgaggtggaattgagattacagctggggggacgaaacatcacaaactccagagacatttttgtggatgcaaatggctcctctttaataataaaagtacagcactctgggtcttttgtcacacttatggaaactaatcaactgtttgaaaaaataaagcctgctgaaacaatatggtatatagatgaagatcagctagtaataaacttgaagaagcaggatccagatttgaaatggcctgacattgttgagtcctgggagtctttgaccgttggatctatgcaacttctgaaaggaacgtcaatttacattgttggcgattcaactgaaatcaaccagaaagtggctcaagaacttgcggttggtcttggatatacaccactcactacgaaggagttgctggaagcatttgccaagcagagtgttgattcatggctgcttgctgaaggttctgaacctgtagtagaagcagaaagtgctatattagaaagtttaagtagtcatgctagggcagtaattggtacattaggaggccagcatggagctgctggaagagctcataaatggcgccatctttatgcaggatttactatctggctgtcacaaactgatgctacagatgaagattctgcaaaggaagaggccaggagtcatatccaagatggtagagtagcttactcaaatgcagacgttgttgtcaagctacagggttgggatgtagatcatgttaaaactgtggctcaggcatgcttgagtgcacttaaacaattagttctgtcagacaagaagcttccaggtaagaagagcctctacatacgcttgggatgccgaggtgactggccaaacatcaaacctcctgggtgggatccctcaactggagatgatgcatctccaggtggatttcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CS SKI

Protein Analysis

385

Amino Acids

42.25

Weight (kDa)

5.56

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35500
fragaria_vesca	FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010
malus_domestica	MD06G1026400.v1.1
prunus_persica	Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1
pyrus_communis	pycom06g02160
rosa_chinensis	RchiOBHm_Chr7g0211741
rosa_laevigata	RLG00000002972
rosa_multiflora	Rmu_sc0001875.1_g000021
rosa_roxburghii	Rroxscaffold_3G00247480
rosa_rugosa	Rorug07G0128200
rosa_samantha	Rh7AG260900 Rh7BG254400 Rh7CG277400 Rh7DG267500
rosa_wichuraiana	Rw7G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	944
AccB1I	GGYRCC	2 cut(s)	153, 816
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccII	CGCG	1 cut(s)	135
AciI	CCGC	1 cut(s)	608
AclWI	GGATC	5 cut(s)	464, 477, 532, 1109, 1122
AcoI	YGGCCR	1 cut(s)	1088
AcuI	CTGAAG	1 cut(s)	714
AcyI	GRCGYC	1 cut(s)	817
AfaI	GTAC	2 cut(s)	348, 772
AfiI	CCNNNNNNNGG	2 cut(s)	592, 1124
AgsI	TTSAA	6 cut(s)	74, 398, 460, 481, 573, 1154
AjnI	CCWGG	5 cut(s)	503, 893, 1042, 1105, 1141
AjuI	GAANNNNNNNTTGG	2 cut(s)	594, 626
AluBI	AGCT	8 cut(s)	79, 274, 445, 794, 806, 923, 952, 1039
AluI	AGCT	8 cut(s)	79, 274, 445, 794, 806, 923, 952, 1039
Alw21I	GWGCWC	2 cut(s)	808, 1009
Alw26I	GTCTC	3 cut(s)	135, 187, 297
Alw44I	GTGCAC	1 cut(s)	1005
AlwI	GGATC	5 cut(s)	464, 477, 532, 1109, 1122
AoxI	GGCC	4 cut(s)	485, 781, 891, 1088
ApaLI	GTGCAC	1 cut(s)	1005
ApeKI	GCWGC	2 cut(s)	685, 794
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AspLEI	GCGC	1 cut(s)	819
AsuHPI	GGTGA	3 cut(s)	94, 208, 1094
BaeGI	GKGCMC	1 cut(s)	1009
BalI	TGGCCA	1 cut(s)	1090
BamHI	GGATCC	2 cut(s)	469, 1114
BanI	GGYRCC	2 cut(s)	153, 816
BanII	GRGCYC	1 cut(s)	808
BarI	GAAGNNNNNNTAC	2 cut(s)	1043, 1075
BauI	CACGAG	1 cut(s)	177
Bbv12I	GWGCWC	2 cut(s)	808, 1009
BbvI	GCAGC	2 cut(s)	672, 781
BccI	CCATC	2 cut(s)	828, 905
BceAI	ACGGC	1 cut(s)	141
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BciT130I	CCWGG	5 cut(s)	505, 895, 1044, 1107, 1143
BcoDI	GTCTC	3 cut(s)	135, 187, 297
BfaI	CTAG	2 cut(s)	446, 756
BfmI	CTRYAG	3 cut(s)	708, 864, 953
BfoI	RGCGCY	1 cut(s)	820
BisI	GCNGC	2 cut(s)	686, 795
BlsI	GCNGC	2 cut(s)	687, 796
Bme1390I	CCNGG	5 cut(s)	505, 895, 1044, 1107, 1143
BmiI	GGNNCC	5 cut(s)	155, 328, 471, 818, 1116
BmrFI	CCNGG	5 cut(s)	505, 895, 1044, 1107, 1143
BmsI	GCATC	5 cut(s)	307, 850, 1064, 1123, 1145
BpmI	CTGGAG	3 cut(s)	283, 1125, 1146
Bpu10I	CCTNAGC	1 cut(s)	990
BpuEI	CTTGAG	3 cut(s)	67, 582, 1021
BsaBI	GATNNNNATC	2 cut(s)	438, 969
BsaHI	GRCGYC	1 cut(s)	817
BsaJI	CCNNGG	3 cut(s)	504, 1078, 1106
Bsc4I	CCNNNNNNNGG	2 cut(s)	592, 1124
Bse1I	ACTGG	2 cut(s)	1091, 1129
Bse8I	GATNNNNATC	2 cut(s)	438, 969
BseBI	CCWGG	5 cut(s)	505, 895, 1044, 1107, 1143
BseDI	CCNNGG	3 cut(s)	504, 1078, 1106
BseGI	GGATG	3 cut(s)	322, 970, 1079
BseJI	GATNNNNATC	2 cut(s)	438, 969
BseLI	CCNNNNNNNGG	2 cut(s)	592, 1124
BseMII	CTCAG	2 cut(s)	243, 1004
BseNI	ACTGG	2 cut(s)	1091, 1129
BseRI	GAGGAG	3 cut(s)	175, 178, 319
BseSI	GKGCMC	1 cut(s)	1009
BseXI	GCAGC	2 cut(s)	672, 781
BseYI	CCCAGC	1 cut(s)	274
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	4 cut(s)	487, 783, 893, 1090
BshNI	GGYRCC	2 cut(s)	153, 816
BsiHKAI	GWGCWC	2 cut(s)	808, 1009
BslFI	GGGAC	2 cut(s)	194, 294
BslI	CCNNNNNNNGG	2 cut(s)	592, 1124
BsmAI	GTCTC	3 cut(s)	135, 187, 297
BsmBI	CGTCTC	1 cut(s)	135
BsmFI	GGGAC	2 cut(s)	194, 294
BsnI	GGCC	4 cut(s)	487, 783, 893, 1090
Bsp1286I	GDGCHC	2 cut(s)	808, 1009
Bsp143I	GATC	5 cut(s)	439, 469, 524, 970, 1114
BspACI	CCGC	1 cut(s)	608
BspANI	GGCC	4 cut(s)	487, 783, 893, 1090
BspCNI	CTCAG	2 cut(s)	244, 1003
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	5 cut(s)	155, 328, 471, 818, 1116
BspPI	GGATC	5 cut(s)	464, 477, 532, 1109, 1122
BspQI	GCTCTTC	2 cut(s)	796, 1046
BspT107I	GGYRCC	2 cut(s)	153, 816
BsrI	ACTGG	2 cut(s)	1091, 1129
BssECI	CCNNGG	3 cut(s)	504, 1078, 1106
BssMI	GATC	5 cut(s)	439, 469, 524, 970, 1114
BssNI	GRCGYC	1 cut(s)	817
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	5 cut(s)	505, 895, 1044, 1107, 1143
Bst4CI	ACNGT	7 cut(s)	8, 100, 208, 220, 393, 520, 985
Bst6I	CTCTTC	4 cut(s)	70, 796, 882, 1046
BstACI	GRCGYC	1 cut(s)	817
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstC8I	GCNNGC	4 cut(s)	411, 690, 785, 997
BstDEI	CTNAG	2 cut(s)	252, 990
BstF5I	GGATG	3 cut(s)	322, 970, 1079
BstFNI	CGCG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	820
BstHHI	GCGC	1 cut(s)	819
BstKTI	GATC	5 cut(s)	442, 472, 527, 973, 1117
BstMAI	GTCTC	3 cut(s)	135, 187, 297
BstMBI	GATC	5 cut(s)	439, 469, 524, 970, 1114
BstMWI	GCNNNNNNNGC	3 cut(s)	725, 803, 1074
BstNI	CCWGG	5 cut(s)	505, 895, 1044, 1107, 1143
BstNSI	RCATGY	1 cut(s)	999
BstSCI	CCNGG	5 cut(s)	503, 893, 1042, 1105, 1141
BstSFI	CTRYAG	3 cut(s)	708, 864, 953
BstSLI	GKGCMC	1 cut(s)	1009
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	672, 781
BstX2I	RGATCY	3 cut(s)	469, 524, 1114
BstYI	RGATCY	3 cut(s)	469, 524, 1114
BsuRI	GGCC	4 cut(s)	487, 783, 893, 1090
BtsCI	GGATG	3 cut(s)	322, 970, 1079
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	4 cut(s)	411, 690, 785, 997
CfoI	GCGC	1 cut(s)	819
Csp6I	GTAC	2 cut(s)	347, 771
CviAII	CATG	5 cut(s)	681, 752, 788, 974, 996
CviQI	GTAC	2 cut(s)	347, 771
DdeI	CTNAG	2 cut(s)	252, 990
DinI	GGCGCC	1 cut(s)	818
DpnI	GATC	5 cut(s)	441, 471, 526, 972, 1116
DpnII	GATC	5 cut(s)	439, 469, 524, 970, 1114
DraI	TTTAAA	1 cut(s)	162
DrdI	GACNNNNNNGTC	1 cut(s)	944
DseDI	GACNNNNNNGTC	1 cut(s)	944
EaeI	YGGCCR	1 cut(s)	1088
Eam1104I	CTCTTC	4 cut(s)	70, 796, 882, 1046
EarI	CTCTTC	4 cut(s)	70, 796, 882, 1046
Ecl136II	GAGCTC	1 cut(s)	806
Eco24I	GRGCYC	1 cut(s)	808
Eco53kI	GAGCTC	1 cut(s)	806
Eco57I	CTGAAG	1 cut(s)	714
EcoICRI	GAGCTC	1 cut(s)	806
EcoRII	CCWGG	5 cut(s)	503, 893, 1042, 1105, 1141
EcoT22I	ATGCAT	1 cut(s)	1138
EcoT38I	GRGCYC	1 cut(s)	808
EgeI	GGCGCC	1 cut(s)	818
EheI	GGCGCC	1 cut(s)	818
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	5 cut(s)	684, 755, 791, 977, 999
FaqI	GGGAC	2 cut(s)	194, 294
FatI	CATG	5 cut(s)	680, 751, 787, 973, 995
Fnu4HI	GCNGC	2 cut(s)	686, 795
FokI	GGATG	3 cut(s)	329, 977, 1086
FriOI	GRGCYC	1 cut(s)	808
Fsp4HI	GCNGC	2 cut(s)	686, 795
FspBI	CTAG	2 cut(s)	446, 756
GlaI	GCGC	1 cut(s)	818
GluI	GCNGC	2 cut(s)	686, 795
GsaI	CCCAGC	1 cut(s)	278
GsuI	CTGGAG	3 cut(s)	283, 1125, 1146
HaeII	RGCGCY	1 cut(s)	820
HaeIII	GGCC	4 cut(s)	487, 783, 893, 1090
HhaI	GCGC	1 cut(s)	819
Hin1I	GRCGYC	1 cut(s)	817
Hin1II	CATG	5 cut(s)	684, 755, 791, 977, 999
Hin6I	GCGC	1 cut(s)	817
HinP1I	GCGC	1 cut(s)	817
HindIII	AAGCTT	1 cut(s)	1037
HinfI	GANTC	7 cut(s)	245, 500, 509, 569, 677, 875, 898
HphI	GGTGA	3 cut(s)	94, 208, 1094
Hpy166II	GTNNAC	1 cut(s)	1007
Hpy188I	TCNGA	3 cut(s)	540, 703, 1030
Hpy188III	TCNNGA	5 cut(s)	84, 239, 300, 473, 599
Hpy8I	GTNNAC	1 cut(s)	1007
HpyAV	CCTTC	3 cut(s)	80, 634, 689
HpyCH4III	ACNGT	7 cut(s)	8, 100, 208, 220, 393, 520, 985
HpyCH4IV	ACGT	2 cut(s)	548, 939
HpyCH4V	TGCA	8 cut(s)	58, 320, 532, 830, 881, 935, 1007, 1136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	725, 803, 1074
HpyF3I	CTNAG	2 cut(s)	252, 990
HpySE526I	ACGT	2 cut(s)	548, 939
Hsp92I	GRCGYC	1 cut(s)	817
Hsp92II	CATG	5 cut(s)	684, 755, 791, 977, 999
HspAI	GCGC	1 cut(s)	817
KasI	GGCGCC	1 cut(s)	816
Kzo9I	GATC	5 cut(s)	439, 469, 524, 970, 1114
LguI	GCTCTTC	2 cut(s)	796, 1046
LmnI	GCTCC	2 cut(s)	332, 791
Lsp1109I	GCAGC	2 cut(s)	672, 781
LweI	GCATC	5 cut(s)	307, 850, 1064, 1123, 1145
MaeI	CTAG	2 cut(s)	446, 756
MaeII	ACGT	2 cut(s)	548, 939
MaeIII	GTNAC	6 cut(s)	8, 100, 214, 367, 849, 1082
MalI	GATC	5 cut(s)	441, 471, 526, 972, 1116
MboI	GATC	5 cut(s)	439, 469, 524, 970, 1114
MboII	GAAGA	7 cut(s)	57, 449, 472, 813, 884, 899, 1063
MflI	RGATCY	3 cut(s)	469, 524, 1114
MhlI	GDGCHC	2 cut(s)	808, 1009
MlsI	TGGCCA	1 cut(s)	1090
MluCI	AATT	4 cut(s)	260, 552, 765, 1016
MluNI	TGGCCA	1 cut(s)	1090
Mly113I	GGCGCC	1 cut(s)	817
MlyI	GAGTC	3 cut(s)	509, 518, 907
MmeI	TCCRAC	1 cut(s)	502
Mox20I	TGGCCA	1 cut(s)	1090
Mph1103I	ATGCAT	1 cut(s)	1138
MscI	TGGCCA	1 cut(s)	1090
MseI	TTAA	6 cut(s)	44, 161, 335, 743, 978, 1011
MslI	CAYNNNNRTG	3 cut(s)	311, 374, 825
Msp20I	TGGCCA	1 cut(s)	1090
MspA1I	CMGCKG	1 cut(s)	274
MspR9I	CCNGG	5 cut(s)	505, 895, 1044, 1107, 1143
MvaI	CCWGG	5 cut(s)	505, 895, 1044, 1107, 1143
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	725, 803, 1074
NarI	GGCGCC	1 cut(s)	817
NdeII	GATC	5 cut(s)	439, 469, 524, 970, 1114
NlaIII	CATG	5 cut(s)	684, 755, 791, 977, 999
NlaIV	GGNNCC	5 cut(s)	155, 328, 471, 818, 1116
NmeAIII	GCCGAG	1 cut(s)	1103
NmuCI	GTSAC	6 cut(s)	8, 100, 214, 367, 849, 1082
NsiI	ATGCAT	1 cut(s)	1138
NspI	RCATGY	1 cut(s)	999
PaeI	GCATGC	1 cut(s)	999
PciSI	GCTCTTC	2 cut(s)	796, 1046
PfeI	GAWTC	4 cut(s)	245, 569, 677, 875
PflMI	CCANNNNNTGG	1 cut(s)	592
PkrI	GCNGC	2 cut(s)	687, 796
PleI	GAGTC	3 cut(s)	508, 517, 906
PluTI	GGCGCC	1 cut(s)	820
PpsI	GAGTC	3 cut(s)	508, 517, 906
Psp124BI	GAGCTC	1 cut(s)	808
Psp6I	CCWGG	5 cut(s)	503, 893, 1042, 1105, 1141
PspFI	CCCAGC	1 cut(s)	274
PspGI	CCWGG	5 cut(s)	503, 893, 1042, 1105, 1141
PspN4I	GGNNCC	5 cut(s)	155, 328, 471, 818, 1116
PsuI	RGATCY	3 cut(s)	469, 524, 1114
PvuII	CAGCTG	1 cut(s)	274
RsaI	GTAC	2 cut(s)	348, 772
RsaNI	GTAC	2 cut(s)	347, 771
RseI	CAYNNNNRTG	3 cut(s)	311, 374, 825
SacI	GAGCTC	1 cut(s)	808
SapI	GCTCTTC	2 cut(s)	796, 1046
SaqAI	TTAA	6 cut(s)	44, 161, 335, 743, 978, 1011
SatI	GCNGC	2 cut(s)	686, 795
Sau3AI	GATC	5 cut(s)	439, 469, 524, 970, 1114
SchI	GAGTC	3 cut(s)	509, 518, 907
ScrFI	CCNGG	5 cut(s)	505, 895, 1044, 1107, 1143
SduI	GDGCHC	2 cut(s)	808, 1009
SfaNI	GCATC	5 cut(s)	307, 850, 1064, 1123, 1145
SfcI	CTRYAG	3 cut(s)	708, 864, 953
SfoI	GGCGCC	1 cut(s)	818
SmiMI	CAYNNNNRTG	3 cut(s)	311, 374, 825
SmlI	CTYRAG	3 cut(s)	82, 597, 1000
SmoI	CTYRAG	3 cut(s)	82, 597, 1000
SphI	GCATGC	1 cut(s)	999
Sse9I	AATT	4 cut(s)	260, 552, 765, 1016
SsiI	CCGC	1 cut(s)	608
SspDI	GGCGCC	1 cut(s)	816
SspMI	CTAG	2 cut(s)	446, 756
SstI	GAGCTC	1 cut(s)	808
StyD4I	CCNGG	5 cut(s)	503, 893, 1042, 1105, 1141
TaaI	ACNGT	7 cut(s)	8, 100, 208, 220, 393, 520, 985
TaiI	ACGT	2 cut(s)	551, 942
TasI	AATT	4 cut(s)	260, 552, 765, 1016
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	4 cut(s)	245, 569, 677, 875
Tru1I	TTAA	6 cut(s)	44, 161, 335, 743, 978, 1011
Tru9I	TTAA	6 cut(s)	44, 161, 335, 743, 978, 1011
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	6 cut(s)	8, 100, 214, 367, 849, 1082
TseI	GCWGC	2 cut(s)	685, 794
Tsp45I	GTSAC	6 cut(s)	8, 100, 214, 367, 849, 1082
TspDTI	ATGAA	3 cut(s)	450, 669, 885
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	592
VneI	GTGCAC	1 cut(s)	1005
XceI	RCATGY	1 cut(s)	999
XcmI	CCANNNNNNNNNTGG	1 cut(s)	480
XspI	CTAG	2 cut(s)	446, 756
Zsp2I	ATGCAT	1 cut(s)	1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.