Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004803

Physical Location & Seq

Genomic Coordinates Forward (+)

23191898 .. 23195351

Gene Structure 3454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG254400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCCGCTACCACCACCACCACCACCACTTCCACTGCTTTAATCAACACCTTGCAACCCTCTTCCCTTCAAAAGCTCTCAAGACCCAAATGGACAGTCACCAACCTTTCTCTCCCACCACCTCCGTCTCTCGTTTTGTTCGCAAATGGGTACCGTTTAAAGACCTCCCTCACTCGTGTCTCCTCCTCCCAAAGTTTCCCCACCGTCCCCGTCACCGTCACCGTCAAGGACTACGAGTTTCTTGATGGTTCTACTGAGGTGGAATTGAGATTACAGCTGGGGGGACGAAACATCACAAACTCCAGAGACATTTTTGTGGATGCAAATGGCTCCTCTTTAATAATAAAAGTACAGCACTCTGGGTCTTTTGTCACACTTATGGAAACTAATCAACTGTTTGATAAAATAAAGCCTGCTGAAACAATATGGTATATAGATGAAGATCAGCTAGTAATAAACTTGAAGAAGCAGGATCCAGATTTGAAATGGCCTGACATTGTTGAGTCCTGGGAATCTTTGACCGTTGTATCTATGCAACTTCTGAAAGGAACGTCAATTTACATTGTTGGCGATTCAACTGAAATCAACCAGAAAGTGGCTCAAGAACTTGCGGTTGGTCTTGGATATACACCACTCACTACGAAGGAGTTGCTGGAAGCATTTGCCAAGCAGAGTGTTGATTCATGGCTGCTTGCTGAAGGTTCTGAATCTGTAGTAGAAGCAGAAAGTGCTATATTAGAAAGTTTAAGTAGTCATGCTAGGGCAGTAATTGGTACATTAGGAGGCCAGCATGGAGCTGCTGGAAGAGCTCATAAATGGCGCCATCTTTATGCAGGATTTACTATCTGGCTGTCACAAACTGATGCTACAGATGAAGATTCTGCAAAGGAAGAGGCCCGGAATCATATCCAAGATGGTAGAGTAGCTTACTCAAATGCAGATGTTGTTGTCAAGCTACAGGGTTGGGATGTAGATCATGTTAAAACTGTGGCTCAGGCATGCTTGAGTGCACTTAAACAATTAGTTCTGTCAGACAAGAAGCTTCCAGGTAAGAAGAGCCTCTACATACGCTTGGGATGCCGAGGTGACTGGCCAAACATCAAACCTCCTGGGTGGGATCCCTCAGCTGGAGATGATGCATCTCCAGGTGGATTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CS SKI

Protein Analysis

386

Amino Acids

42.15

Weight (kDa)

5.59

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35500
fragaria_vesca	FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010
malus_domestica	MD06G1026400.v1.1
prunus_persica	Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1
pyrus_communis	pycom06g02160
rosa_chinensis	RchiOBHm_Chr7g0211741
rosa_laevigata	RLG00000002972
rosa_multiflora	Rmu_sc0001875.1_g000021
rosa_roxburghii	Rroxscaffold_3G00247480
rosa_rugosa	Rorug07G0128200
rosa_samantha	Rh7AG260900 Rh7BG254400 Rh7CG277400 Rh7DG267500
rosa_wichuraiana	Rw7G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	150
AccB1I	GGYRCC	2 cut(s)	150, 819
AccB7I	CCANNNNNTGG	1 cut(s)	595
AciI	CCGC	2 cut(s)	6, 611
AclWI	GGATC	4 cut(s)	467, 480, 1112, 1125
AcoI	YGGCCR	2 cut(s)	3, 1091
AcuI	CTGAAG	1 cut(s)	717
AcyI	GRCGYC	1 cut(s)	820
AfaI	GTAC	3 cut(s)	152, 351, 775
AfiI	CCNNNNNNNGG	2 cut(s)	595, 1127
AgsI	TTSAA	5 cut(s)	71, 463, 484, 576, 1157
AjnI	CCWGG	4 cut(s)	506, 1045, 1108, 1144
AjuI	GAANNNNNNNTTGG	2 cut(s)	597, 629
AluBI	AGCT	9 cut(s)	76, 277, 448, 797, 809, 926, 955, 1042, 1127
AluI	AGCT	9 cut(s)	76, 277, 448, 797, 809, 926, 955, 1042, 1127
Alw21I	GWGCWC	2 cut(s)	811, 1012
Alw26I	GTCTC	3 cut(s)	132, 184, 300
Alw44I	GTGCAC	1 cut(s)	1008
AlwI	GGATC	4 cut(s)	467, 480, 1112, 1125
AoxI	GGCC	5 cut(s)	3, 488, 784, 894, 1091
ApaLI	GTGCAC	1 cut(s)	1008
ApeKI	GCWGC	2 cut(s)	688, 797
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
Asp718I	GGTACC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	822
AspS9I	GGNCC	1 cut(s)	895
AsuC2I	CCSGG	1 cut(s)	898
AsuHPI	GGTGA	4 cut(s)	91, 205, 211, 1097
BaeGI	GKGCMC	1 cut(s)	1012
BaeI	ACNNNNGTAYC	2 cut(s)	510, 543
BalI	TGGCCA	1 cut(s)	1093
BamHI	GGATCC	2 cut(s)	472, 1117
BanI	GGYRCC	2 cut(s)	150, 819
BanII	GRGCYC	1 cut(s)	811
BarI	GAAGNNNNNNTAC	2 cut(s)	1046, 1078
BauI	CACGAG	1 cut(s)	174
Bbv12I	GWGCWC	2 cut(s)	811, 1012
BbvCI	CCTCAGC	1 cut(s)	1123
BbvI	GCAGC	2 cut(s)	675, 784
BccI	CCATC	3 cut(s)	239, 831, 908
BcgI	CGANNNNNNTGC	2 cut(s)	631, 665
BciT130I	CCWGG	4 cut(s)	508, 1047, 1110, 1146
BcnI	CCSGG	1 cut(s)	898
BcoDI	GTCTC	3 cut(s)	132, 184, 300
BfaI	CTAG	2 cut(s)	449, 759
BfmI	CTRYAG	3 cut(s)	711, 867, 956
BfoI	RGCGCY	1 cut(s)	823
BisI	GCNGC	3 cut(s)	6, 689, 798
BlsI	GCNGC	3 cut(s)	7, 690, 799
Bme1390I	CCNGG	5 cut(s)	508, 898, 1047, 1110, 1146
BmgT120I	GGNCC	1 cut(s)	895
BmiI	GGNNCC	5 cut(s)	152, 331, 474, 821, 1119
BmrFI	CCNGG	5 cut(s)	508, 898, 1047, 1110, 1146
BmsI	GCATC	5 cut(s)	310, 853, 1067, 1126, 1148
BpmI	CTGGAG	3 cut(s)	286, 1128, 1149
Bpu10I	CCTNAGC	2 cut(s)	993, 1123
BpuEI	CTTGAG	3 cut(s)	64, 585, 1024
BpuMI	CCSGG	1 cut(s)	898
BsaBI	GATNNNNATC	2 cut(s)	441, 972
BsaHI	GRCGYC	1 cut(s)	820
BsaJI	CCNNGG	3 cut(s)	507, 1081, 1109
Bsc4I	CCNNNNNNNGG	2 cut(s)	595, 1127
Bse1I	ACTGG	1 cut(s)	1094
Bse8I	GATNNNNATC	2 cut(s)	441, 972
BseBI	CCWGG	4 cut(s)	508, 1047, 1110, 1146
BseDI	CCNNGG	3 cut(s)	507, 1081, 1109
BseGI	GGATG	3 cut(s)	325, 973, 1082
BseJI	GATNNNNATC	2 cut(s)	441, 972
BseLI	CCNNNNNNNGG	2 cut(s)	595, 1127
BseMII	CTCAG	3 cut(s)	246, 1007, 1137
BseNI	ACTGG	1 cut(s)	1094
BseRI	GAGGAG	3 cut(s)	172, 175, 322
BseSI	GKGCMC	1 cut(s)	1012
BseXI	GCAGC	2 cut(s)	675, 784
BseYI	CCCAGC	1 cut(s)	277
BshFI	GGCC	5 cut(s)	5, 490, 786, 896, 1093
BshNI	GGYRCC	2 cut(s)	150, 819
BsiHKAI	GWGCWC	2 cut(s)	811, 1012
BsiSI	CCGG	1 cut(s)	898
BslFI	GGGAC	2 cut(s)	191, 297
BslI	CCNNNNNNNGG	2 cut(s)	595, 1127
BsmAI	GTCTC	3 cut(s)	132, 184, 300
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	2 cut(s)	191, 297
BsnI	GGCC	5 cut(s)	5, 490, 786, 896, 1093
Bsp1286I	GDGCHC	2 cut(s)	811, 1012
Bsp143I	GATC	4 cut(s)	442, 472, 973, 1117
BspACI	CCGC	2 cut(s)	6, 611
BspANI	GGCC	5 cut(s)	5, 490, 786, 896, 1093
BspCNI	CTCAG	3 cut(s)	247, 1006, 1136
BspLI	GGNNCC	5 cut(s)	152, 331, 474, 821, 1119
BspPI	GGATC	4 cut(s)	467, 480, 1112, 1125
BspQI	GCTCTTC	2 cut(s)	799, 1049
BspT107I	GGYRCC	2 cut(s)	150, 819
BsrI	ACTGG	1 cut(s)	1094
BssECI	CCNNGG	3 cut(s)	507, 1081, 1109
BssMI	GATC	4 cut(s)	442, 472, 973, 1117
BssNI	GRCGYC	1 cut(s)	820
BssSI	CACGAG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	4 cut(s)	508, 1047, 1110, 1146
Bst4CI	ACNGT	8 cut(s)	97, 155, 205, 217, 223, 396, 523, 988
Bst6I	CTCTTC	4 cut(s)	67, 799, 885, 1049
BstACI	GRCGYC	1 cut(s)	820
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstC8I	GCNNGC	4 cut(s)	414, 693, 788, 1000
BstDEI	CTNAG	3 cut(s)	255, 993, 1123
BstF5I	GGATG	3 cut(s)	325, 973, 1082
BstH2I	RGCGCY	1 cut(s)	823
BstHHI	GCGC	1 cut(s)	822
BstKTI	GATC	4 cut(s)	445, 475, 976, 1120
BstMAI	GTCTC	3 cut(s)	132, 184, 300
BstMBI	GATC	4 cut(s)	442, 472, 973, 1117
BstMWI	GCNNNNNNNGC	3 cut(s)	728, 806, 1077
BstNI	CCWGG	4 cut(s)	508, 1047, 1110, 1146
BstNSI	RCATGY	1 cut(s)	1002
BstSCI	CCNGG	5 cut(s)	506, 896, 1045, 1108, 1144
BstSFI	CTRYAG	3 cut(s)	711, 867, 956
BstSLI	GKGCMC	1 cut(s)	1012
BstV1I	GCAGC	2 cut(s)	675, 784
BstX2I	RGATCY	2 cut(s)	472, 1117
BstYI	RGATCY	2 cut(s)	472, 1117
BsuRI	GGCC	5 cut(s)	5, 490, 786, 896, 1093
BtsCI	GGATG	3 cut(s)	325, 973, 1082
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	4 cut(s)	414, 693, 788, 1000
CfoI	GCGC	1 cut(s)	822
Cfr13I	GGNCC	1 cut(s)	895
Csp6I	GTAC	3 cut(s)	151, 350, 774
CviAII	CATG	5 cut(s)	684, 755, 791, 977, 999
CviQI	GTAC	3 cut(s)	151, 350, 774
DdeI	CTNAG	3 cut(s)	255, 993, 1123
DinI	GGCGCC	1 cut(s)	821
DpnI	GATC	4 cut(s)	444, 474, 975, 1119
DpnII	GATC	4 cut(s)	442, 472, 973, 1117
DraI	TTTAAA	1 cut(s)	159
EaeI	YGGCCR	2 cut(s)	3, 1091
Eam1104I	CTCTTC	4 cut(s)	67, 799, 885, 1049
EarI	CTCTTC	4 cut(s)	67, 799, 885, 1049
Ecl136II	GAGCTC	1 cut(s)	809
Eco24I	GRGCYC	1 cut(s)	811
Eco53kI	GAGCTC	1 cut(s)	809
Eco57I	CTGAAG	1 cut(s)	717
EcoICRI	GAGCTC	1 cut(s)	809
EcoRII	CCWGG	4 cut(s)	506, 1045, 1108, 1144
EcoT22I	ATGCAT	1 cut(s)	1141
EcoT38I	GRGCYC	1 cut(s)	811
EgeI	GGCGCC	1 cut(s)	821
EheI	GGCGCC	1 cut(s)	821
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	5 cut(s)	687, 758, 794, 980, 1002
FaqI	GGGAC	2 cut(s)	191, 297
FatI	CATG	5 cut(s)	683, 754, 790, 976, 998
Fnu4HI	GCNGC	3 cut(s)	6, 689, 798
FokI	GGATG	3 cut(s)	332, 980, 1089
FriOI	GRGCYC	1 cut(s)	811
Fsp4HI	GCNGC	3 cut(s)	6, 689, 798
FspBI	CTAG	2 cut(s)	449, 759
GlaI	GCGC	1 cut(s)	821
GluI	GCNGC	3 cut(s)	6, 689, 798
GsaI	CCCAGC	1 cut(s)	281
GsuI	CTGGAG	3 cut(s)	286, 1128, 1149
HaeII	RGCGCY	1 cut(s)	823
HaeIII	GGCC	5 cut(s)	5, 490, 786, 896, 1093
HapII	CCGG	1 cut(s)	898
HhaI	GCGC	1 cut(s)	822
Hin1I	GRCGYC	1 cut(s)	820
Hin1II	CATG	5 cut(s)	687, 758, 794, 980, 1002
Hin6I	GCGC	1 cut(s)	820
HinP1I	GCGC	1 cut(s)	820
HindIII	AAGCTT	1 cut(s)	1040
HinfI	GANTC	7 cut(s)	503, 512, 572, 680, 707, 878, 901
HpaII	CCGG	1 cut(s)	898
HphI	GGTGA	4 cut(s)	91, 205, 211, 1097
Hpy166II	GTNNAC	1 cut(s)	1010
Hpy188I	TCNGA	3 cut(s)	543, 706, 1033
Hpy188III	TCNNGA	5 cut(s)	81, 242, 303, 476, 602
Hpy8I	GTNNAC	1 cut(s)	1010
HpyAV	CCTTC	3 cut(s)	77, 637, 692
HpyCH4III	ACNGT	8 cut(s)	97, 155, 205, 217, 223, 396, 523, 988
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	8 cut(s)	55, 323, 535, 833, 884, 938, 1010, 1139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	728, 806, 1077
HpyF3I	CTNAG	3 cut(s)	255, 993, 1123
HpySE526I	ACGT	1 cut(s)	551
Hsp92I	GRCGYC	1 cut(s)	820
Hsp92II	CATG	5 cut(s)	687, 758, 794, 980, 1002
HspAI	GCGC	1 cut(s)	820
KasI	GGCGCC	1 cut(s)	819
KpnI	GGTACC	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	442, 472, 973, 1117
LguI	GCTCTTC	2 cut(s)	799, 1049
LmnI	GCTCC	2 cut(s)	335, 794
Lsp1109I	GCAGC	2 cut(s)	675, 784
LweI	GCATC	5 cut(s)	310, 853, 1067, 1126, 1148
MaeI	CTAG	2 cut(s)	449, 759
MaeII	ACGT	1 cut(s)	551
MaeIII	GTNAC	6 cut(s)	97, 211, 217, 370, 852, 1085
MalI	GATC	4 cut(s)	444, 474, 975, 1119
MboI	GATC	4 cut(s)	442, 472, 973, 1117
MboII	GAAGA	7 cut(s)	54, 452, 475, 816, 887, 902, 1066
MflI	RGATCY	2 cut(s)	472, 1117
MhlI	GDGCHC	2 cut(s)	811, 1012
MlsI	TGGCCA	1 cut(s)	1093
MluCI	AATT	4 cut(s)	263, 555, 768, 1019
MluNI	TGGCCA	1 cut(s)	1093
Mly113I	GGCGCC	1 cut(s)	820
MlyI	GAGTC	1 cut(s)	512
Mox20I	TGGCCA	1 cut(s)	1093
Mph1103I	ATGCAT	1 cut(s)	1141
MscI	TGGCCA	1 cut(s)	1093
MseI	TTAA	6 cut(s)	41, 158, 338, 746, 981, 1014
MslI	CAYNNNNRTG	3 cut(s)	314, 377, 828
Msp20I	TGGCCA	1 cut(s)	1093
MspA1I	CMGCKG	2 cut(s)	277, 1127
MspI	CCGG	1 cut(s)	898
MspR9I	CCNGG	5 cut(s)	508, 898, 1047, 1110, 1146
MvaI	CCWGG	4 cut(s)	508, 1047, 1110, 1146
MwoI	GCNNNNNNNGC	3 cut(s)	728, 806, 1077
NarI	GGCGCC	1 cut(s)	820
NciI	CCSGG	1 cut(s)	898
NdeII	GATC	4 cut(s)	442, 472, 973, 1117
NlaIII	CATG	5 cut(s)	687, 758, 794, 980, 1002
NlaIV	GGNNCC	5 cut(s)	152, 331, 474, 821, 1119
NmeAIII	GCCGAG	1 cut(s)	1106
NmuCI	GTSAC	6 cut(s)	97, 211, 217, 370, 852, 1085
NsiI	ATGCAT	1 cut(s)	1141
NspI	RCATGY	1 cut(s)	1002
PaeI	GCATGC	1 cut(s)	1002
PciSI	GCTCTTC	2 cut(s)	799, 1049
PfeI	GAWTC	6 cut(s)	512, 572, 680, 707, 878, 901
PflMI	CCANNNNNTGG	1 cut(s)	595
PkrI	GCNGC	3 cut(s)	7, 690, 799
PleI	GAGTC	1 cut(s)	511
PluTI	GGCGCC	1 cut(s)	823
PpsI	GAGTC	1 cut(s)	511
Psp124BI	GAGCTC	1 cut(s)	811
Psp6I	CCWGG	4 cut(s)	506, 1045, 1108, 1144
PspFI	CCCAGC	1 cut(s)	277
PspGI	CCWGG	4 cut(s)	506, 1045, 1108, 1144
PspN4I	GGNNCC	5 cut(s)	152, 331, 474, 821, 1119
PspPI	GGNCC	1 cut(s)	895
PsuI	RGATCY	2 cut(s)	472, 1117
PvuII	CAGCTG	2 cut(s)	277, 1127
RsaI	GTAC	3 cut(s)	152, 351, 775
RsaNI	GTAC	3 cut(s)	151, 350, 774
RseI	CAYNNNNRTG	3 cut(s)	314, 377, 828
SacI	GAGCTC	1 cut(s)	811
SapI	GCTCTTC	2 cut(s)	799, 1049
SaqAI	TTAA	6 cut(s)	41, 158, 338, 746, 981, 1014
SatI	GCNGC	3 cut(s)	6, 689, 798
Sau3AI	GATC	4 cut(s)	442, 472, 973, 1117
Sau96I	GGNCC	1 cut(s)	895
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	5 cut(s)	508, 898, 1047, 1110, 1146
SduI	GDGCHC	2 cut(s)	811, 1012
SfaNI	GCATC	5 cut(s)	310, 853, 1067, 1126, 1148
SfcI	CTRYAG	3 cut(s)	711, 867, 956
SfoI	GGCGCC	1 cut(s)	821
SmiMI	CAYNNNNRTG	3 cut(s)	314, 377, 828
SmlI	CTYRAG	3 cut(s)	79, 600, 1003
SmoI	CTYRAG	3 cut(s)	79, 600, 1003
SphI	GCATGC	1 cut(s)	1002
Sse9I	AATT	4 cut(s)	263, 555, 768, 1019
SsiI	CCGC	2 cut(s)	6, 611
SspDI	GGCGCC	1 cut(s)	819
SspMI	CTAG	2 cut(s)	449, 759
SstI	GAGCTC	1 cut(s)	811
StyD4I	CCNGG	5 cut(s)	506, 896, 1045, 1108, 1144
TaaI	ACNGT	8 cut(s)	97, 155, 205, 217, 223, 396, 523, 988
TaiI	ACGT	1 cut(s)	554
TasI	AATT	4 cut(s)	263, 555, 768, 1019
TatI	WGTACW	1 cut(s)	349
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	6 cut(s)	512, 572, 680, 707, 878, 901
Tru1I	TTAA	6 cut(s)	41, 158, 338, 746, 981, 1014
Tru9I	TTAA	6 cut(s)	41, 158, 338, 746, 981, 1014
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	6 cut(s)	97, 211, 217, 370, 852, 1085
TseI	GCWGC	2 cut(s)	688, 797
Tsp45I	GTSAC	6 cut(s)	97, 211, 217, 370, 852, 1085
TspDTI	ATGAA	3 cut(s)	453, 672, 888
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	40
Van91I	CCANNNNNTGG	1 cut(s)	595
VneI	GTGCAC	1 cut(s)	1008
XceI	RCATGY	1 cut(s)	1002
XcmI	CCANNNNNNNNNTGG	1 cut(s)	483
XspI	CTAG	2 cut(s)	449, 759
Zsp2I	ATGCAT	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.