Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004803

Physical Location & Seq

Genomic Coordinates Reverse (-)

3249279 .. 3254840

Gene Structure 5562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1026400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGTGGCCACTGCAATTTCCGCCATGAATTCCGTCGTGGCTATCAGTTTCTCGCAAAACCCATTCAACAACTACCGGAACCTCTGCAAACAACAATGGAGGAGGCCTATCTCACTCACACCCACCCACCTTTCCTTCCCAACTCCGACCAAAACTCGGCGCCCTTTACAGACCTCCACTCTCGTCTCCTCCTCCTCCTCCGTCCCCGCCGCCGTCGAGGACTACGAGTTTGTTGATGCTTCTTCTGAGGTGGAGTTGAGATTACAACTCGGGGGTCGAAATTTCGAAAACTCGAGAGATATATTTGTGGATGCAGATGGCACCTCATTGACAATAAAAGTACAGCATTCTGGGTCTCTTATCACACTTGTGGAAACTAATCATCTCTTTGATAAAATAAAGCCTTCTGAAACAATATGGTATATCGATGATGATCAGCTAGTCGTAAACTTGAAAAAGCACGATCCCGAATTGAAATGGCCTGATATTATGGAGTCCTGGGAGTCTCTGACAGCGGGATCCATGCAACTTTTGAAAGGAGCATCAATTTACATTGTTGGGGATTCAACTGAAATCAACCAAAAAGTGGCTCAAGAACTTGCAGTTGGTCTCGGATATACACCACTCAGTACAAAGGAGTTTATGGAATCATTTGCGAAGCAGACCATTGAATCATGGTTGCTTGCTGAAGGTTCTGACTCTGTAGCAGAAGCAGAAAGTGCTGTATTACAAAGTTTAAGTAGTCATGTTCGGGCAGTAGTTGCAACATTAGGAGGGCAGCACGGAGCAGCAGGAAGGGCTGATAAATGGCGTCATCTTTATGCGGGTTTCACTGTCTGGGTGTCCCAAACTGAAGCTACAGATGAAGATTCAGCAAAGGAAGAGGCTAGGAGTCATATTAAAGATGGCAGCCTAGCTTACTCAAACGCAGATGTTGTTGTCAAACTACAAGGTTGGGATGCAGTTCATGCTAAAAGTGTGGCTCAGGGATGCTTGAGTGCCCTTAAACAATTAATTCTATCGGACAAGAAACTTCCAAGTAAGAAGAGCCTCTACATAAGGTTGGGATGCCGAGGTGACTGGCCAAACATCAAGCCTCCTGGATGGGATCCGTCAGCTGGAGATGATGTTTCTCCCAACGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CS SKI

Protein Analysis

383

Amino Acids

41.81

Weight (kDa)

5.54

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35500
fragaria_vesca	FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010
malus_domestica	MD06G1026400.v1.1
prunus_persica	Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1
pyrus_communis	pycom06g02160
rosa_chinensis	RchiOBHm_Chr7g0211741
rosa_laevigata	RLG00000002972
rosa_multiflora	Rmu_sc0001875.1_g000021
rosa_roxburghii	Rroxscaffold_3G00247480
rosa_rugosa	Rorug07G0128200
rosa_samantha	Rh7AG260900 Rh7BG254400 Rh7CG277400 Rh7DG267500
rosa_wichuraiana	Rw7G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	159, 320
AccB7I	CCANNNNNTGG	1 cut(s)	586
AciI	CCGC	5 cut(s)	21, 207, 210, 515, 824
AclWI	GGATC	5 cut(s)	458, 513, 526, 1103, 1116
AcoI	YGGCCR	2 cut(s)	6, 1082
AcsI	RAATTY	2 cut(s)	28, 280
AcuI	CTGAAG	2 cut(s)	708, 873
AcyI	GRCGYC	2 cut(s)	160, 811
AfaI	GTAC	2 cut(s)	342, 631
AfiI	CCNNNNNNNGG	3 cut(s)	156, 586, 1118
AgsI	TTSAA	6 cut(s)	67, 454, 475, 535, 567, 671
AjnI	CCWGG	2 cut(s)	497, 1099
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AleI	CACNNNNGTG	1 cut(s)	368
AluBI	AGCT	4 cut(s)	439, 857, 917, 1118
AluI	AGCT	4 cut(s)	439, 857, 917, 1118
Alw26I	GTCTC	4 cut(s)	190, 360, 510, 614
AlwI	GGATC	5 cut(s)	458, 513, 526, 1103, 1116
Ama87I	CYCGRG	2 cut(s)	269, 292
AoxI	GGCC	4 cut(s)	6, 104, 479, 1082
ApeKI	GCWGC	3 cut(s)	778, 788, 909
ApoI	RAATTY	2 cut(s)	28, 280
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AseI	ATTAAT	1 cut(s)	1013
AspLEI	GCGC	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	1088
AsuII	TTCGAA	1 cut(s)	285
AvaI	CYCGRG	2 cut(s)	269, 292
BaeGI	GKGCMC	1 cut(s)	1003
BalI	TGGCCA	2 cut(s)	8, 1084
BamHI	GGATCC	2 cut(s)	518, 1108
BanI	GGYRCC	2 cut(s)	159, 320
BarI	GAAGNNNNNNTAC	2 cut(s)	1037, 1069
BbvI	GCAGC	3 cut(s)	790, 800, 921
BccI	CCATC	3 cut(s)	311, 899, 1098
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	499, 1101
BclI	TGATCA	1 cut(s)	433
BcoDI	GTCTC	4 cut(s)	190, 360, 510, 614
BfaI	CTAG	3 cut(s)	440, 888, 914
BfmI	CTRYAG	2 cut(s)	702, 858
BfoI	RGCGCY	1 cut(s)	163
BisI	GCNGC	4 cut(s)	210, 779, 789, 910
BlsI	GCNGC	4 cut(s)	211, 780, 790, 911
Bme1390I	CCNGG	2 cut(s)	499, 1101
BmeT110I	CYCGRG	2 cut(s)	269, 292
BmiI	GGNNCC	5 cut(s)	80, 161, 322, 520, 1110
BmrFI	CCNGG	2 cut(s)	499, 1101
BmsI	GCATC	6 cut(s)	226, 301, 551, 949, 980, 1058
BpmI	CTGGAG	1 cut(s)	1140
Bpu10I	CCTNAGC	1 cut(s)	984
Bpu14I	TTCGAA	1 cut(s)	285
BpuEI	CTTGAG	2 cut(s)	576, 1015
Bsa29I	ATCGAT	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	432
BsaHI	GRCGYC	2 cut(s)	160, 811
BsaI	GGTCTC	2 cut(s)	360, 614
BsaJI	CCNNGG	2 cut(s)	498, 1072
BsaWI	WCCGGW	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	1113, 1143
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 586, 1118
Bse1I	ACTGG	1 cut(s)	1085
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	2 cut(s)	499, 1101
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	498, 1072
BseGI	GGATG	5 cut(s)	316, 964, 995, 1073, 1109
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	3 cut(s)	156, 586, 1118
BseMII	CTCAG	3 cut(s)	237, 640, 998
BseNI	ACTGG	1 cut(s)	1085
BseRI	GAGGAG	5 cut(s)	115, 178, 181, 184, 187
BseSI	GKGCMC	1 cut(s)	1003
BseXI	GCAGC	3 cut(s)	790, 800, 921
BshFI	GGCC	4 cut(s)	8, 106, 481, 1084
BshNI	GGYRCC	2 cut(s)	159, 320
BshVI	ATCGAT	1 cut(s)	426
BsiHKCI	CYCGRG	2 cut(s)	269, 292
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	2 cut(s)	188, 829
BslI	CCNNNNNNNGG	3 cut(s)	156, 586, 1118
BsmAI	GTCTC	4 cut(s)	190, 360, 510, 614
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	2 cut(s)	188, 829
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	4 cut(s)	8, 106, 481, 1084
Bso31I	GGTCTC	2 cut(s)	360, 614
BsoBI	CYCGRG	2 cut(s)	269, 292
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	1003
Bsp143I	GATC	4 cut(s)	433, 463, 518, 1108
BspACI	CCGC	5 cut(s)	21, 207, 210, 515, 824
BspANI	GGCC	4 cut(s)	8, 106, 481, 1084
BspCNI	CTCAG	3 cut(s)	238, 639, 997
BspDI	ATCGAT	1 cut(s)	426
BspLI	GGNNCC	5 cut(s)	80, 161, 322, 520, 1110
BspPI	GGATC	5 cut(s)	458, 513, 526, 1103, 1116
BspQI	GCTCTTC	1 cut(s)	1040
BspT104I	TTCGAA	1 cut(s)	285
BspT107I	GGYRCC	2 cut(s)	159, 320
BspTNI	GGTCTC	2 cut(s)	360, 614
BsrI	ACTGG	1 cut(s)	1085
BssECI	CCNNGG	2 cut(s)	498, 1072
BssMI	GATC	4 cut(s)	433, 463, 518, 1108
BssNI	GRCGYC	2 cut(s)	160, 811
Bst2UI	CCWGG	2 cut(s)	499, 1101
Bst4CI	ACNGT	1 cut(s)	835
Bst6I	CTCTTC	2 cut(s)	876, 1040
BstACI	GRCGYC	2 cut(s)	160, 811
BstAPI	GCANNNNNTGC	3 cut(s)	719, 761, 968
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	3 cut(s)	246, 626, 984
BstF5I	GGATG	5 cut(s)	316, 964, 995, 1073, 1109
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	4 cut(s)	436, 466, 521, 1111
BstMAI	GTCTC	4 cut(s)	190, 360, 510, 614
BstMBI	GATC	4 cut(s)	433, 463, 518, 1108
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 719, 761, 797, 968
BstNI	CCWGG	2 cut(s)	499, 1101
BstSCI	CCNGG	2 cut(s)	497, 1099
BstSFI	CTRYAG	2 cut(s)	702, 858
BstSLI	GKGCMC	1 cut(s)	1003
BstV1I	GCAGC	3 cut(s)	790, 800, 921
BstX2I	RGATCY	2 cut(s)	518, 1108
BstYI	RGATCY	2 cut(s)	518, 1108
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	4 cut(s)	8, 106, 481, 1084
BsuTUI	ATCGAT	1 cut(s)	426
BtsCI	GGATG	5 cut(s)	316, 964, 995, 1073, 1109
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	9, 831
Cac8I	GCNNGC	1 cut(s)	684
CfoI	GCGC	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	426
CseI	GACGC	1 cut(s)	800
Csp6I	GTAC	2 cut(s)	341, 630
CviAII	CATG	5 cut(s)	25, 523, 675, 746, 968
CviQI	GTAC	2 cut(s)	341, 630
DdeI	CTNAG	3 cut(s)	246, 626, 984
DinI	GGCGCC	1 cut(s)	161
DpnI	GATC	4 cut(s)	435, 465, 520, 1110
DpnII	GATC	4 cut(s)	433, 463, 518, 1108
EaeI	YGGCCR	2 cut(s)	6, 1082
Eam1104I	CTCTTC	2 cut(s)	876, 1040
EarI	CTCTTC	2 cut(s)	876, 1040
EciI	GGCGGA	1 cut(s)	10
Eco147I	AGGCCT	1 cut(s)	106
Eco31I	GGTCTC	2 cut(s)	360, 614
Eco57I	CTGAAG	2 cut(s)	708, 873
Eco88I	CYCGRG	2 cut(s)	269, 292
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	497, 1099
EgeI	GGCGCC	1 cut(s)	161
EheI	GGCGCC	1 cut(s)	161
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	5 cut(s)	28, 526, 678, 749, 971
FaqI	GGGAC	2 cut(s)	188, 829
FatI	CATG	5 cut(s)	24, 522, 674, 745, 967
FauI	CCCGC	3 cut(s)	214, 508, 817
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	4 cut(s)	210, 779, 789, 910
FokI	GGATG	5 cut(s)	323, 971, 1002, 1080, 1116
Fsp4HI	GCNGC	4 cut(s)	210, 779, 789, 910
FspBI	CTAG	3 cut(s)	440, 888, 914
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	4 cut(s)	210, 779, 789, 910
GsuI	CTGGAG	1 cut(s)	1140
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	4 cut(s)	8, 106, 481, 1084
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	800
HhaI	GCGC	1 cut(s)	162
Hin1I	GRCGYC	2 cut(s)	160, 811
Hin1II	CATG	5 cut(s)	28, 526, 678, 749, 971
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	8 cut(s)	494, 503, 563, 647, 671, 698, 869, 892
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	1 cut(s)	1088
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	7 cut(s)	147, 247, 409, 510, 614, 697, 1024
Hpy188III	TCNNGA	3 cut(s)	294, 467, 593
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	2 cut(s)	38, 218
HpyAV	CCTTC	4 cut(s)	145, 414, 683, 789
HpyCH4III	ACNGT	1 cut(s)	835
HpyCH4V	TGCA	7 cut(s)	14, 87, 314, 526, 602, 764, 962
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 719, 761, 797, 968
HpyF3I	CTNAG	3 cut(s)	246, 626, 984
Hsp92I	GRCGYC	2 cut(s)	160, 811
Hsp92II	CATG	5 cut(s)	28, 526, 678, 749, 971
HspAI	GCGC	1 cut(s)	160
KasI	GGCGCC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	4 cut(s)	433, 463, 518, 1108
LguI	GCTCTTC	1 cut(s)	1040
LmnI	GCTCC	2 cut(s)	539, 785
Lsp1109I	GCAGC	3 cut(s)	790, 800, 921
LweI	GCATC	6 cut(s)	226, 301, 551, 949, 980, 1058
MaeI	CTAG	3 cut(s)	440, 888, 914
MaeIII	GTNAC	1 cut(s)	1076
MalI	GATC	4 cut(s)	435, 465, 520, 1110
MboI	GATC	4 cut(s)	433, 463, 518, 1108
MboII	GAAGA	4 cut(s)	234, 878, 893, 1057
MflI	RGATCY	2 cut(s)	518, 1108
MhlI	GDGCHC	1 cut(s)	1003
MlsI	TGGCCA	2 cut(s)	8, 1084
MluCI	AATT	7 cut(s)	15, 28, 280, 470, 546, 1010, 1014
MluNI	TGGCCA	2 cut(s)	8, 1084
Mly113I	GGCGCC	1 cut(s)	160
MlyI	GAGTC	4 cut(s)	503, 512, 692, 901
MmeI	TCCRAC	1 cut(s)	170
Mox20I	TGGCCA	2 cut(s)	8, 1084
MscI	TGGCCA	2 cut(s)	8, 1084
MseI	TTAA	4 cut(s)	737, 900, 1005, 1013
MslI	CAYNNNNRTG	2 cut(s)	368, 819
Msp20I	TGGCCA	2 cut(s)	8, 1084
MspA1I	CMGCKG	2 cut(s)	515, 1118
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	2 cut(s)	499, 1101
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	2 cut(s)	499, 1101
MwoI	GCNNNNNNNGC	5 cut(s)	20, 719, 761, 797, 968
NarI	GGCGCC	1 cut(s)	160
NdeII	GATC	4 cut(s)	433, 463, 518, 1108
NlaIII	CATG	5 cut(s)	28, 526, 678, 749, 971
NlaIV	GGNNCC	5 cut(s)	80, 161, 322, 520, 1110
NmeAIII	GCCGAG	2 cut(s)	136, 1097
NmuCI	GTSAC	1 cut(s)	1076
NspV	TTCGAA	1 cut(s)	285
OliI	CACNNNNGTG	1 cut(s)	368
PaeR7I	CTCGAG	1 cut(s)	292
PceI	AGGCCT	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	1040
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	4 cut(s)	563, 647, 671, 869
PflMI	CCANNNNNTGG	1 cut(s)	586
PfoI	TCCNGGA	1 cut(s)	1099
PkrI	GCNGC	4 cut(s)	211, 780, 790, 911
PleI	GAGTC	4 cut(s)	502, 511, 692, 900
PluTI	GGCGCC	1 cut(s)	163
PpsI	GAGTC	4 cut(s)	502, 511, 692, 900
PshBI	ATTAAT	1 cut(s)	1013
Psp6I	CCWGG	2 cut(s)	497, 1099
PspGI	CCWGG	2 cut(s)	497, 1099
PspN4I	GGNNCC	5 cut(s)	80, 161, 322, 520, 1110
PsuI	RGATCY	2 cut(s)	518, 1108
PvuII	CAGCTG	1 cut(s)	1118
RsaI	GTAC	2 cut(s)	342, 631
RsaNI	GTAC	2 cut(s)	341, 630
RseI	CAYNNNNRTG	2 cut(s)	368, 819
SapI	GCTCTTC	1 cut(s)	1040
SaqAI	TTAA	4 cut(s)	737, 900, 1005, 1013
SatI	GCNGC	4 cut(s)	210, 779, 789, 910
Sau3AI	GATC	4 cut(s)	433, 463, 518, 1108
SchI	GAGTC	4 cut(s)	503, 512, 692, 901
ScrFI	CCNGG	2 cut(s)	499, 1101
SduI	GDGCHC	1 cut(s)	1003
SfaNI	GCATC	6 cut(s)	226, 301, 551, 949, 980, 1058
SfcI	CTRYAG	2 cut(s)	702, 858
SfoI	GGCGCC	1 cut(s)	161
Sfr274I	CTCGAG	1 cut(s)	292
SfuI	TTCGAA	1 cut(s)	285
SlaI	CTCGAG	1 cut(s)	292
SmiMI	CAYNNNNRTG	2 cut(s)	368, 819
SmlI	CTYRAG	3 cut(s)	292, 591, 994
SmoI	CTYRAG	3 cut(s)	292, 591, 994
Sse9I	AATT	7 cut(s)	15, 28, 280, 470, 546, 1010, 1014
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	5 cut(s)	21, 207, 210, 515, 824
SspDI	GGCGCC	1 cut(s)	159
SspMI	CTAG	3 cut(s)	440, 888, 914
StuI	AGGCCT	1 cut(s)	106
StyD4I	CCNGG	2 cut(s)	497, 1099
TaaI	ACNGT	1 cut(s)	835
TaqI	TCGA	5 cut(s)	216, 277, 285, 293, 426
TasI	AATT	7 cut(s)	15, 28, 280, 470, 546, 1010, 1014
TatI	WGTACW	2 cut(s)	340, 629
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	4 cut(s)	563, 647, 671, 869
Tru1I	TTAA	4 cut(s)	737, 900, 1005, 1013
Tru9I	TTAA	4 cut(s)	737, 900, 1005, 1013
TscAI	CASTG	2 cut(s)	16, 838
TseFI	GTSAC	1 cut(s)	1076
TseI	GCWGC	3 cut(s)	778, 788, 909
Tsp45I	GTSAC	1 cut(s)	1076
TspDTI	ATGAA	3 cut(s)	41, 879, 956
TspGWI	ACGGA	4 cut(s)	22, 190, 798, 1101
TspRI	CASTG	2 cut(s)	16, 838
Van91I	CCANNNNNTGG	1 cut(s)	586
VspI	ATTAAT	1 cut(s)	1013
XapI	RAATTY	2 cut(s)	28, 280
XhoI	CTCGAG	1 cut(s)	292
XspI	CTAG	3 cut(s)	440, 888, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.