RchiOBHm_Chr7g0211741
NAC Family

inactive shikimate kinase like 2

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
28954990 .. 28959360
4371 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18943

Sequence Viewer

Length: 1269 bp
ATGAGCTTTTGGACCCGCGGGGCAAATGACAACCTCTGCCGACAGATTCTTCTTGTAACGGCTCACTTTGAGTCCTCATCCTCGTCTTATCCAACTATCCCTGTTCAATTCCAAACAGAAATGGCCGCTACCACCACCACCACTTCCACTGCTTTAATCAACACCTTGCAACCCTCTTCCCTTCAAAAGCTCTCAAGACCCAAATGGACAGTTACCAACCTTTCTCTCCCAACACCTCCGTCTCGCGTTTTGTTCGCAAATGGGTGCCGTTTAAGGACCCCCCTCACTCGTGTCTCCTCCTCTCAAAGTTTCCCCACCGTCCCCTTCACCGTCAAGGACTACGAGTTTCTTGATGGTTCTACTGAGGTGGAATTGAGATTACAGCTGGGGGGACGAAACATCACAAACTCCAGAGACATTTTTGTGGATGCAAATGGCTCCTCTTTAATAATAAAAGTACAGCACTCTGGGTCTTTTGTCACACTTATGGAAACTAATCAACTGTTTGAAAAAATAAAGCCTGCTGAAACAATATGGTATATAGATGAAGATCAGCTAGTAATAAACTTGAAGAAGCAGGATCCAGATTTGAAATGGCCTGACATTGTTGAGTCCTGGGAGTCTTTGACCGTTGGATCTATGCAACTTCTGAAAGCAACGTCAATTTACATTGTTGGCGATTCAACTGAAATCAACCAGAAAGTGGCTCAAGAACTTGCGGTTGGTCTTGGATATACACCACTCACTACTAAGGAGTTGCTGGAAGCATTTGCCAAGCAGAGTGTTGATTCATGGCTGCTTGCTGAAGGTTCTGAATCTGTAGTAGAAGCAGAAAGTGCTATATTAGAAAGTTTAAGTAGTCATGCTAGGGCAGTAATTGGTACATTAGGAGGCCAGCATGGAGCTGCTGGAAGAGCTCATAAATGGCGTCATCTTTATGCAGGATTTACTATCTGGCTGTCACAAACTGATGCTACAGATGAAGATTCTGCAAAGGAAGAGGCCAGGAGTCATATCCAAGATGGTAGAGTAGCTTACTCAAATGCAGACGTTGTTGTCAAGCTACAGGGTTGGGATGTAGATCATGTTAAAACTGTGGCTCAGGCATGCTTGAGTGCACTTAAACAATTAGTTCTGTCAGACAAGAAGCTTCCAGGTAAGAAGAGCCTCTACATACGCTTGGGATGCCGAGGTGACTGGCCAAACATCAAACCTCCTGGGTGGGATCCCTCAGCTGGAGATGATGCATCTCCAGGTGGATTTCAATAA
Functional Annotation

Protein Analysis

422

Amino Acids

46.33

Weight (kDa)

5.69

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1055
AccB1I GGYRCC 1 cut(s) 264
AccB7I CCANNNNNTGG 1 cut(s) 703
AccII CGCG 2 cut(s) 18, 246
AciI CCGC 4 cut(s) 16, 18, 126, 719
AclWI GGATC 5 cut(s) 575, 588, 643, 1220, 1233
AcoI YGGCCR 2 cut(s) 123, 1199
AcuI CTGAAG 1 cut(s) 825
AcyI GRCGYC 1 cut(s) 928
AfaI GTAC 2 cut(s) 459, 883
AfiI CCNNNNNNNGG 2 cut(s) 703, 1235
AgsI TTSAA 7 cut(s) 107, 185, 509, 571, 592, 684, 1265
AjnI CCWGG 5 cut(s) 614, 1004, 1153, 1216, 1252
AjuI GAANNNNNNNTTGG 2 cut(s) 705, 737
Alw21I GWGCWC 2 cut(s) 919, 1120
Alw26I GTCTC 3 cut(s) 246, 298, 408
Alw44I GTGCAC 1 cut(s) 1116
AlwI GGATC 5 cut(s) 575, 588, 643, 1220, 1233
AoxI GGCC 5 cut(s) 123, 596, 892, 1002, 1199
ApaLI GTGCAC 1 cut(s) 1116
ApeKI GCWGC 2 cut(s) 796, 905
AspS9I GGNCC 2 cut(s) 12, 276
AsuHPI GGTGA 2 cut(s) 319, 1205
AvaII GGWCC 2 cut(s) 12, 276
BaeGI GKGCMC 1 cut(s) 1120
BalI TGGCCA 1 cut(s) 1201
BamHI GGATCC 2 cut(s) 580, 1225
BanI GGYRCC 1 cut(s) 264
BanII GRGCYC 1 cut(s) 919
BarI GAAGNNNNNNTAC 2 cut(s) 1154, 1186
BauI CACGAG 1 cut(s) 288
Bbv12I GWGCWC 2 cut(s) 919, 1120
BbvCI CCTCAGC 1 cut(s) 1231
BbvI GCAGC 2 cut(s) 783, 892
BccI CCATC 2 cut(s) 347, 1016
BceAI ACGGC 2 cut(s) 75, 252
BciT130I CCWGG 5 cut(s) 616, 1006, 1155, 1218, 1254
BcoDI GTCTC 3 cut(s) 246, 298, 408
BfaI CTAG 2 cut(s) 557, 867
BfmI CTRYAG 3 cut(s) 819, 975, 1064
BisI GCNGC 3 cut(s) 126, 797, 906
BlsI GCNGC 3 cut(s) 127, 798, 907
Bme1390I CCNGG 5 cut(s) 616, 1006, 1155, 1218, 1254
Bme18I GGWCC 2 cut(s) 12, 276
BmgT120I GGNCC 2 cut(s) 12, 276
BmiI GGNNCC 6 cut(s) 14, 266, 278, 439, 582, 1227
BmrFI CCNGG 5 cut(s) 616, 1006, 1155, 1218, 1254
BmsI GCATC 5 cut(s) 418, 961, 1175, 1234, 1256
BpmI CTGGAG 3 cut(s) 394, 1236, 1257
Bpu10I CCTNAGC 2 cut(s) 1101, 1231
BpuEI CTTGAG 3 cut(s) 178, 693, 1132
BsaBI GATNNNNATC 2 cut(s) 549, 1080
BsaHI GRCGYC 1 cut(s) 928
BsaJI CCNNGG 4 cut(s) 16, 615, 1189, 1217
Bsc4I CCNNNNNNNGG 2 cut(s) 703, 1235
Bse1I ACTGG 1 cut(s) 1202
Bse8I GATNNNNATC 2 cut(s) 549, 1080
BseBI CCWGG 5 cut(s) 616, 1006, 1155, 1218, 1254
BseDI CCNNGG 4 cut(s) 16, 615, 1189, 1217
BseGI GGATG 4 cut(s) 77, 433, 1081, 1190
BseJI GATNNNNATC 2 cut(s) 549, 1080
BseLI CCNNNNNNNGG 2 cut(s) 703, 1235
BseMII CTCAG 3 cut(s) 354, 1115, 1245
BseNI ACTGG 1 cut(s) 1202
BseRI GAGGAG 3 cut(s) 286, 289, 430
BseSI GKGCMC 1 cut(s) 1120
BseXI GCAGC 2 cut(s) 783, 892
BseYI CCCAGC 1 cut(s) 385
Bsh1236I CGCG 2 cut(s) 18, 246
BshFI GGCC 5 cut(s) 125, 598, 894, 1004, 1201
BshNI GGYRCC 1 cut(s) 264
BsiHKAI GWGCWC 2 cut(s) 919, 1120
BslFI GGGAC 2 cut(s) 305, 405
BslI CCNNNNNNNGG 2 cut(s) 703, 1235
BsmAI GTCTC 3 cut(s) 246, 298, 408
BsmBI CGTCTC 1 cut(s) 246
BsmFI GGGAC 2 cut(s) 305, 405
BsnI GGCC 5 cut(s) 125, 598, 894, 1004, 1201
Bsp1286I GDGCHC 2 cut(s) 919, 1120
Bsp143I GATC 5 cut(s) 550, 580, 635, 1081, 1225
BspACI CCGC 4 cut(s) 16, 18, 126, 719
BspANI GGCC 5 cut(s) 125, 598, 894, 1004, 1201
BspCNI CTCAG 3 cut(s) 355, 1114, 1244
BspFNI CGCG 2 cut(s) 18, 246
BspLI GGNNCC 6 cut(s) 14, 266, 278, 439, 582, 1227
BspPI GGATC 5 cut(s) 575, 588, 643, 1220, 1233
BspQI GCTCTTC 2 cut(s) 907, 1157
BspT107I GGYRCC 1 cut(s) 264
BsrI ACTGG 1 cut(s) 1202
BssECI CCNNGG 4 cut(s) 16, 615, 1189, 1217
BssMI GATC 5 cut(s) 550, 580, 635, 1081, 1225
BssNI GRCGYC 1 cut(s) 928
BssSI CACGAG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 288
Bst2UI CCWGG 5 cut(s) 616, 1006, 1155, 1218, 1254
Bst4CI ACNGT 6 cut(s) 211, 319, 331, 504, 631, 1096
Bst6I CTCTTC 4 cut(s) 181, 907, 993, 1157
BstACI GRCGYC 1 cut(s) 928
BstAPI GCANNNNNTGC 1 cut(s) 836
BstC8I GCNNGC 4 cut(s) 522, 801, 896, 1108
BstDEI CTNAG 4 cut(s) 363, 750, 1101, 1231
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 4 cut(s) 77, 433, 1081, 1190
BstFNI CGCG 2 cut(s) 18, 246
BstKTI GATC 5 cut(s) 553, 583, 638, 1084, 1228
BstMAI GTCTC 3 cut(s) 246, 298, 408
BstMBI GATC 5 cut(s) 550, 580, 635, 1081, 1225
BstMWI GCNNNNNNNGC 3 cut(s) 836, 914, 1185
BstNI CCWGG 5 cut(s) 616, 1006, 1155, 1218, 1254
BstNSI RCATGY 1 cut(s) 1110
BstSCI CCNGG 5 cut(s) 614, 1004, 1153, 1216, 1252
BstSFI CTRYAG 3 cut(s) 819, 975, 1064
BstSLI GKGCMC 1 cut(s) 1120
BstUI CGCG 2 cut(s) 18, 246
BstV1I GCAGC 2 cut(s) 783, 892
BstX2I RGATCY 3 cut(s) 580, 635, 1225
BstYI RGATCY 3 cut(s) 580, 635, 1225
BsuRI GGCC 5 cut(s) 125, 598, 894, 1004, 1201
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 4 cut(s) 77, 433, 1081, 1190
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 4 cut(s) 522, 801, 896, 1108
Cfr13I GGNCC 2 cut(s) 12, 276
Cfr42I CCGCGG 1 cut(s) 19
CseI GACGC 1 cut(s) 917
Csp6I GTAC 2 cut(s) 458, 882
CviAII CATG 5 cut(s) 792, 863, 899, 1085, 1107
CviQI GTAC 2 cut(s) 458, 882
DdeI CTNAG 4 cut(s) 363, 750, 1101, 1231
DpnI GATC 5 cut(s) 552, 582, 637, 1083, 1227
DpnII GATC 5 cut(s) 550, 580, 635, 1081, 1225
DrdI GACNNNNNNGTC 1 cut(s) 1055
DseDI GACNNNNNNGTC 1 cut(s) 1055
EaeI YGGCCR 2 cut(s) 123, 1199
Eam1104I CTCTTC 4 cut(s) 181, 907, 993, 1157
EarI CTCTTC 4 cut(s) 181, 907, 993, 1157
Ecl136II GAGCTC 1 cut(s) 917
Eco24I GRGCYC 1 cut(s) 919
Eco47I GGWCC 2 cut(s) 12, 276
Eco53kI GAGCTC 1 cut(s) 917
Eco57I CTGAAG 1 cut(s) 825
EcoICRI GAGCTC 1 cut(s) 917
EcoO109I RGGNCCY 1 cut(s) 276
EcoRII CCWGG 5 cut(s) 614, 1004, 1153, 1216, 1252
EcoT22I ATGCAT 1 cut(s) 1249
EcoT38I GRGCYC 1 cut(s) 919
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 5 cut(s) 795, 866, 902, 1088, 1110
FaqI GGGAC 2 cut(s) 305, 405
FatI CATG 5 cut(s) 791, 862, 898, 1084, 1106
FauI CCCGC 2 cut(s) 11, 23
Fnu4HI GCNGC 3 cut(s) 126, 797, 906
FokI GGATG 4 cut(s) 64, 440, 1088, 1197
FriOI GRGCYC 1 cut(s) 919
Fsp4HI GCNGC 3 cut(s) 126, 797, 906
FspBI CTAG 2 cut(s) 557, 867
GluI GCNGC 3 cut(s) 126, 797, 906
GsaI CCCAGC 1 cut(s) 389
GsuI CTGGAG 3 cut(s) 394, 1236, 1257
HaeIII GGCC 5 cut(s) 125, 598, 894, 1004, 1201
HgaI GACGC 1 cut(s) 917
Hin1I GRCGYC 1 cut(s) 928
Hin1II CATG 5 cut(s) 795, 866, 902, 1088, 1110
HindIII AAGCTT 1 cut(s) 1148
HinfI GANTC 9 cut(s) 46, 71, 611, 620, 680, 788, 815, 986, 1009
HphI GGTGA 2 cut(s) 319, 1205
Hpy166II GTNNAC 1 cut(s) 1118
Hpy188I TCNGA 3 cut(s) 651, 814, 1141
Hpy188III TCNNGA 5 cut(s) 195, 350, 411, 584, 710
Hpy8I GTNNAC 1 cut(s) 1118
HpyAV CCTTC 3 cut(s) 191, 334, 800
HpyCH4III ACNGT 6 cut(s) 211, 319, 331, 504, 631, 1096
HpyCH4IV ACGT 2 cut(s) 659, 1050
HpyCH4V TGCA 8 cut(s) 169, 431, 643, 941, 992, 1046, 1118, 1247
HpyF10VI GCNNNNNNNGC 3 cut(s) 836, 914, 1185
HpyF3I CTNAG 4 cut(s) 363, 750, 1101, 1231
HpySE526I ACGT 2 cut(s) 659, 1050
Hsp92I GRCGYC 1 cut(s) 928
Hsp92II CATG 5 cut(s) 795, 866, 902, 1088, 1110
KspI CCGCGG 1 cut(s) 19
Kzo9I GATC 5 cut(s) 550, 580, 635, 1081, 1225
LguI GCTCTTC 2 cut(s) 907, 1157
LmnI GCTCC 2 cut(s) 443, 902
Lsp1109I GCAGC 2 cut(s) 783, 892
LweI GCATC 5 cut(s) 418, 961, 1175, 1234, 1256
MaeI CTAG 2 cut(s) 557, 867
MaeII ACGT 2 cut(s) 659, 1050
MaeIII GTNAC 5 cut(s) 55, 211, 478, 960, 1193
MalI GATC 5 cut(s) 552, 582, 637, 1083, 1227
MboI GATC 5 cut(s) 550, 580, 635, 1081, 1225
MboII GAAGA 8 cut(s) 41, 168, 560, 583, 924, 995, 1010, 1174
MflI RGATCY 3 cut(s) 580, 635, 1225
MhlI GDGCHC 2 cut(s) 919, 1120
MlsI TGGCCA 1 cut(s) 1201
MluCI AATT 5 cut(s) 107, 371, 663, 876, 1127
MluNI TGGCCA 1 cut(s) 1201
MlyI GAGTC 4 cut(s) 80, 620, 629, 1018
MmeI TCCRAC 2 cut(s) 116, 613
Mox20I TGGCCA 1 cut(s) 1201
Mph1103I ATGCAT 1 cut(s) 1249
MscI TGGCCA 1 cut(s) 1201
MseI TTAA 6 cut(s) 155, 272, 446, 854, 1089, 1122
MslI CAYNNNNRTG 3 cut(s) 422, 485, 936
Msp20I TGGCCA 1 cut(s) 1201
MspA1I CMGCKG 3 cut(s) 18, 385, 1235
MspR9I CCNGG 5 cut(s) 616, 1006, 1155, 1218, 1254
MvaI CCWGG 5 cut(s) 616, 1006, 1155, 1218, 1254
MvnI CGCG 2 cut(s) 18, 246
MwoI GCNNNNNNNGC 3 cut(s) 836, 914, 1185
NdeII GATC 5 cut(s) 550, 580, 635, 1081, 1225
NlaIII CATG 5 cut(s) 795, 866, 902, 1088, 1110
NlaIV GGNNCC 6 cut(s) 14, 266, 278, 439, 582, 1227
NmeAIII GCCGAG 1 cut(s) 1214
NmuCI GTSAC 3 cut(s) 478, 960, 1193
NsiI ATGCAT 1 cut(s) 1249
NspI RCATGY 1 cut(s) 1110
PaeI GCATGC 1 cut(s) 1110
PciSI GCTCTTC 2 cut(s) 907, 1157
PfeI GAWTC 5 cut(s) 46, 680, 788, 815, 986
PflMI CCANNNNNTGG 1 cut(s) 703
PkrI GCNGC 3 cut(s) 127, 798, 907
PleI GAGTC 4 cut(s) 79, 619, 628, 1017
PpsI GAGTC 4 cut(s) 79, 619, 628, 1017
PpuMI RGGWCCY 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 919
Psp5II RGGWCCY 1 cut(s) 276
Psp6I CCWGG 5 cut(s) 614, 1004, 1153, 1216, 1252
PspFI CCCAGC 1 cut(s) 385
PspGI CCWGG 5 cut(s) 614, 1004, 1153, 1216, 1252
PspN4I GGNNCC 6 cut(s) 14, 266, 278, 439, 582, 1227
PspPI GGNCC 2 cut(s) 12, 276
PspPPI RGGWCCY 1 cut(s) 276
PsuI RGATCY 3 cut(s) 580, 635, 1225
PvuII CAGCTG 2 cut(s) 385, 1235
RsaI GTAC 2 cut(s) 459, 883
RsaNI GTAC 2 cut(s) 458, 882
RseI CAYNNNNRTG 3 cut(s) 422, 485, 936
SacI GAGCTC 1 cut(s) 919
SacII CCGCGG 1 cut(s) 19
SapI GCTCTTC 2 cut(s) 907, 1157
SaqAI TTAA 6 cut(s) 155, 272, 446, 854, 1089, 1122
SatI GCNGC 3 cut(s) 126, 797, 906
Sau3AI GATC 5 cut(s) 550, 580, 635, 1081, 1225
Sau96I GGNCC 2 cut(s) 12, 276
SchI GAGTC 4 cut(s) 80, 620, 629, 1018
ScrFI CCNGG 5 cut(s) 616, 1006, 1155, 1218, 1254
SduI GDGCHC 2 cut(s) 919, 1120
SfaNI GCATC 5 cut(s) 418, 961, 1175, 1234, 1256
SfcI CTRYAG 3 cut(s) 819, 975, 1064
Sfr303I CCGCGG 1 cut(s) 19
SgrBI CCGCGG 1 cut(s) 19
SinI GGWCC 2 cut(s) 12, 276
SmiMI CAYNNNNRTG 3 cut(s) 422, 485, 936
SmlI CTYRAG 3 cut(s) 193, 708, 1111
SmoI CTYRAG 3 cut(s) 193, 708, 1111
SphI GCATGC 1 cut(s) 1110
Sse9I AATT 5 cut(s) 107, 371, 663, 876, 1127
SsiI CCGC 4 cut(s) 16, 18, 126, 719
SspMI CTAG 2 cut(s) 557, 867
SstI GAGCTC 1 cut(s) 919
StyD4I CCNGG 5 cut(s) 614, 1004, 1153, 1216, 1252
TaaI ACNGT 6 cut(s) 211, 319, 331, 504, 631, 1096
TaiI ACGT 2 cut(s) 662, 1053
TasI AATT 5 cut(s) 107, 371, 663, 876, 1127
TatI WGTACW 1 cut(s) 457
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 5 cut(s) 46, 680, 788, 815, 986
Tru1I TTAA 6 cut(s) 155, 272, 446, 854, 1089, 1122
Tru9I TTAA 6 cut(s) 155, 272, 446, 854, 1089, 1122
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 3 cut(s) 478, 960, 1193
TseI GCWGC 2 cut(s) 796, 905
Tsp45I GTSAC 3 cut(s) 478, 960, 1193
TspDTI ATGAA 3 cut(s) 561, 780, 996
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 1 cut(s) 154
Van91I CCANNNNNTGG 1 cut(s) 703
VneI GTGCAC 1 cut(s) 1116
VpaK11BI GGWCC 2 cut(s) 12, 276
XceI RCATGY 1 cut(s) 1110
XcmI CCANNNNNNNNNTGG 1 cut(s) 591
XspI CTAG 2 cut(s) 557, 867
Zsp2I ATGCAT 1 cut(s) 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.