Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004803

Physical Location & Seq

Genomic Coordinates Reverse (-)

3293366 .. 3300516

Gene Structure 7151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G028300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGTGGATACAACAATTTCTACCATCACTTGCTCTGGTTTCAGTTTCTCGCAAAATCCAATCAACACCTCACAGCTCTCTTCCCTCCAGAAACTCTGCAAACCCAAATGGAGTTGTATCTCATTCTCACTCACCGACCTTTATTTCCCAAGTCCTCGCCTTTTGTTCGGAAATGGCCGCCACCTAAAGACCTCTTATAGTCCCAAAGTCTCCTCCCAGAGTCTCTCCACCATCCCCGTCCCCAGCAAGAACTACGAGTTTCTTGATGGTTCTTCTGAGGTGGAATTGAGATTACAGCTTGGGGGTCAAAATATCCAAAGCAGTAGAGATATTTTTGTGGATGCAAATGGCACCTCATTGACAATAAAAGTACAGCACTCTGGGTCTCTTATCACACATATGGAAACTAATCATCTGTTTGATAAAATAAAGCCTGCTGAAACAATATGGTATATAGATGATGATGAGCTAGTTATAAACTTGAAAAAGCAGGATCCAGAATTGAAATGGCCTGATATTATGGAGTCCTGGGAGTCTCTGACACTGGGATCTATGCAACTTCTGAAAGGAGCATCAATTTACATTGTTGGGGATTCAACTGAAATCAACCAGAAAGTGGCTCAAGAACTTGCAGTTGGTCTTGGATATACACCACTGAGTACGAAGGAGTTGCTGGAAACATTTGCCAAGCAGAGCATTGATTCATGGCTGCTTGCTGAAGGTTCTGACTCTGTAGCAGAAGCAGAAAGTGCTATATTACAAAGTTTAAGTAGTCATGTTCGAGCAGTAGTTGCAACATTAGGAGGGCAGCAGGGAGCTGCTAGAAGGGCTGGTAAATGGCGCCATCTTTATGCCGGATTTACTGTCTGGCTGTCCCAAACTGAAGCTACAGATGAAGATTCAGCAAAGGAAGAGGCCAGGAGTCATATTAAAGATGGCATACTAGCTTACTCAAACGCAGACGTGGTTGTCAAGCTACAGGGTTGGGATACAGATCATACTAAAAGTGTGGCAGAGGGATGCTTGAGTGCCCTTAAACAATTAATTCTATCAGACAAGAAACTTCCAGGTAAGAAGAGCCTCTACATAAGGTTGGGCTGCCGAGGTGACTGGCCAAACATCAAGCCTCCTGGTTGGGATCCATCAGCTGGAGATGATGTTTCTCCTAGTGGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CS SKI

Protein Analysis

393

Amino Acids

42.97

Weight (kDa)

5.56

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35500
fragaria_vesca	FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010
malus_domestica	MD06G1026400.v1.1
prunus_persica	Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1
pyrus_communis	pycom06g02160
rosa_chinensis	RchiOBHm_Chr7g0211741
rosa_laevigata	RLG00000002972
rosa_multiflora	Rmu_sc0001875.1_g000021
rosa_roxburghii	Rroxscaffold_3G00247480
rosa_rugosa	Rorug07G0128200
rosa_samantha	Rh7AG260900 Rh7BG254400 Rh7CG277400 Rh7DG267500
rosa_wichuraiana	Rw7G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AasI	GACNNNNNNGTC	1 cut(s)	968
AccB1I	GGYRCC	2 cut(s)	350, 840
AccB7I	CCANNNNNTGG	2 cut(s)	616, 1148
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	5 cut(s)	488, 501, 556, 1133, 1146
AcoI	YGGCCR	2 cut(s)	175, 1112
AcuI	CTGAAG	2 cut(s)	738, 903
AcyI	GRCGYC	1 cut(s)	841
AfaI	GTAC	2 cut(s)	372, 661
AfiI	CCNNNNNNNGG	2 cut(s)	616, 1148
AgsI	TTSAA	3 cut(s)	484, 505, 597
AjiI	CACGTC	1 cut(s)	964
AjnI	CCWGG	4 cut(s)	527, 917, 1066, 1129
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AluBI	AGCT	8 cut(s)	76, 298, 469, 818, 887, 947, 976, 1148
AluI	AGCT	8 cut(s)	76, 298, 469, 818, 887, 947, 976, 1148
Alw26I	GTCTC	4 cut(s)	214, 227, 390, 540
AlwI	GGATC	5 cut(s)	488, 501, 556, 1133, 1146
AoxI	GGCC	4 cut(s)	175, 509, 915, 1112
ApeKI	GCWGC	4 cut(s)	709, 808, 818, 1098
AseI	ATTAAT	1 cut(s)	1043
AspLEI	GCGC	1 cut(s)	843
AsuHPI	GGTGA	2 cut(s)	124, 1118
BaeGI	GKGCMC	1 cut(s)	1033
BalI	TGGCCA	1 cut(s)	1114
BamHI	GGATCC	2 cut(s)	493, 1138
BanI	GGYRCC	2 cut(s)	350, 840
BarI	GAAGNNNNNNTAC	2 cut(s)	1067, 1099
BbvI	GCAGC	4 cut(s)	696, 805, 820, 1085
BccI	CCATC	6 cut(s)	32, 239, 260, 852, 929, 1150
BcgI	CGANNNNNNTGC	2 cut(s)	652, 686
BciT130I	CCWGG	4 cut(s)	529, 919, 1068, 1131
BciVI	GTATCC	1 cut(s)	982
BcoDI	GTCTC	4 cut(s)	214, 227, 390, 540
BfaI	CTAG	4 cut(s)	470, 822, 944, 1167
BfmI	CTRYAG	3 cut(s)	732, 888, 977
BfoI	RGCGCY	1 cut(s)	844
BfuI	GTATCC	1 cut(s)	982
BisI	GCNGC	5 cut(s)	178, 710, 809, 819, 1099
BlsI	GCNGC	5 cut(s)	179, 711, 810, 820, 1100
Bme1390I	CCNGG	4 cut(s)	529, 919, 1068, 1131
BmgBI	CACGTC	1 cut(s)	964
BmiI	GGNNCC	4 cut(s)	352, 495, 842, 1140
BmrFI	CCNGG	4 cut(s)	529, 919, 1068, 1131
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	3 cut(s)	331, 581, 1010
BmuI	ACTGGG	1 cut(s)	554
BpmI	CTGGAG	2 cut(s)	71, 1170
BpuEI	CTTGAG	2 cut(s)	606, 1045
BsaBI	GATNNNNATC	1 cut(s)	993
BsaHI	GRCGYC	1 cut(s)	841
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	528, 1102
BsaXI	ACNNNNNCTCC	2 cut(s)	1143, 1173
Bsc4I	CCNNNNNNNGG	2 cut(s)	616, 1148
Bse1I	ACTGG	2 cut(s)	549, 1115
Bse8I	GATNNNNATC	1 cut(s)	993
BseBI	CCWGG	4 cut(s)	529, 919, 1068, 1131
BseDI	CCNNGG	2 cut(s)	528, 1102
BseGI	GGATG	3 cut(s)	231, 346, 1025
BseJI	GATNNNNATC	1 cut(s)	993
BseLI	CCNNNNNNNGG	2 cut(s)	616, 1148
BseMII	CTCAG	2 cut(s)	267, 647
BseNI	ACTGG	2 cut(s)	549, 1115
BseRI	GAGGAG	1 cut(s)	202
BseSI	GKGCMC	1 cut(s)	1033
BseXI	GCAGC	4 cut(s)	696, 805, 820, 1085
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	4 cut(s)	177, 511, 917, 1114
BshNI	GGYRCC	2 cut(s)	350, 840
BsiSI	CCGG	1 cut(s)	855
BslFI	GGGAC	3 cut(s)	186, 224, 859
BslI	CCNNNNNNNGG	2 cut(s)	616, 1148
BsmAI	GTCTC	4 cut(s)	214, 227, 390, 540
BsmFI	GGGAC	3 cut(s)	186, 224, 859
BsnI	GGCC	4 cut(s)	177, 511, 917, 1114
Bso31I	GGTCTC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	1033
Bsp143I	GATC	4 cut(s)	493, 548, 994, 1138
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	4 cut(s)	177, 511, 917, 1114
BspCNI	CTCAG	2 cut(s)	268, 648
BspLI	GGNNCC	4 cut(s)	352, 495, 842, 1140
BspPI	GGATC	5 cut(s)	488, 501, 556, 1133, 1146
BspQI	GCTCTTC	1 cut(s)	1070
BspT107I	GGYRCC	2 cut(s)	350, 840
BspTNI	GGTCTC	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	549, 1115
BssECI	CCNNGG	2 cut(s)	528, 1102
BssMI	GATC	4 cut(s)	493, 548, 994, 1138
BssNI	GRCGYC	1 cut(s)	841
Bst2UI	CCWGG	4 cut(s)	529, 919, 1068, 1131
Bst4CI	ACNGT	1 cut(s)	865
Bst6I	CTCTTC	3 cut(s)	85, 906, 1070
BstACI	GRCGYC	1 cut(s)	841
BstAPI	GCANNNNNTGC	2 cut(s)	749, 791
BstC8I	GCNNGC	2 cut(s)	435, 714
BstDEI	CTNAG	2 cut(s)	276, 656
BstF5I	GGATG	3 cut(s)	231, 346, 1025
BstH2I	RGCGCY	1 cut(s)	844
BstHHI	GCGC	1 cut(s)	843
BstKTI	GATC	4 cut(s)	496, 551, 997, 1141
BstMAI	GTCTC	4 cut(s)	214, 227, 390, 540
BstMBI	GATC	4 cut(s)	493, 548, 994, 1138
BstMWI	GCNNNNNNNGC	3 cut(s)	749, 791, 827
BstNI	CCWGG	4 cut(s)	529, 919, 1068, 1131
BstSCI	CCNGG	4 cut(s)	527, 917, 1066, 1129
BstSFI	CTRYAG	3 cut(s)	732, 888, 977
BstSLI	GKGCMC	1 cut(s)	1033
BstV1I	GCAGC	4 cut(s)	696, 805, 820, 1085
BstX2I	RGATCY	3 cut(s)	493, 548, 1138
BstYI	RGATCY	3 cut(s)	493, 548, 1138
BsuI	GTATCC	1 cut(s)	982
BsuRI	GGCC	4 cut(s)	177, 511, 917, 1114
BtrI	CACGTC	1 cut(s)	964
BtsCI	GGATG	3 cut(s)	231, 346, 1025
BtsIMutI	CAGTG	2 cut(s)	542, 653
Cac8I	GCNNGC	2 cut(s)	435, 714
CfoI	GCGC	1 cut(s)	843
Csp6I	GTAC	2 cut(s)	371, 660
CviAII	CATG	2 cut(s)	705, 776
CviQI	GTAC	2 cut(s)	371, 660
DdeI	CTNAG	2 cut(s)	276, 656
DinI	GGCGCC	1 cut(s)	842
DpnI	GATC	4 cut(s)	495, 550, 996, 1140
DpnII	GATC	4 cut(s)	493, 548, 994, 1138
DrdI	GACNNNNNNGTC	1 cut(s)	968
DseDI	GACNNNNNNGTC	1 cut(s)	968
EaeI	YGGCCR	2 cut(s)	175, 1112
Eam1104I	CTCTTC	3 cut(s)	85, 906, 1070
EarI	CTCTTC	3 cut(s)	85, 906, 1070
Eco31I	GGTCTC	1 cut(s)	390
Eco57I	CTGAAG	2 cut(s)	738, 903
EcoRII	CCWGG	4 cut(s)	527, 917, 1066, 1129
EgeI	GGCGCC	1 cut(s)	842
EheI	GGCGCC	1 cut(s)	842
FaeI	CATG	2 cut(s)	708, 779
FaqI	GGGAC	3 cut(s)	186, 224, 859
FatI	CATG	2 cut(s)	704, 775
FauNDI	CATATG	1 cut(s)	399
Fnu4HI	GCNGC	5 cut(s)	178, 710, 809, 819, 1099
FokI	GGATG	3 cut(s)	218, 353, 1032
Fsp4HI	GCNGC	5 cut(s)	178, 710, 809, 819, 1099
FspBI	CTAG	4 cut(s)	470, 822, 944, 1167
GlaI	GCGC	1 cut(s)	842
GluI	GCNGC	5 cut(s)	178, 710, 809, 819, 1099
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	2 cut(s)	71, 1170
HaeII	RGCGCY	1 cut(s)	844
HaeIII	GGCC	4 cut(s)	177, 511, 917, 1114
HapII	CCGG	1 cut(s)	855
HhaI	GCGC	1 cut(s)	843
Hin1I	GRCGYC	1 cut(s)	841
Hin1II	CATG	2 cut(s)	708, 779
Hin6I	GCGC	1 cut(s)	841
HinP1I	GCGC	1 cut(s)	841
HinfI	GANTC	9 cut(s)	220, 524, 533, 593, 701, 728, 899, 922, 1173
HpaII	CCGG	1 cut(s)	855
HphI	GGTGA	2 cut(s)	124, 1118
Hpy188I	TCNGA	6 cut(s)	170, 277, 540, 564, 727, 1054
Hpy188III	TCNNGA	4 cut(s)	88, 263, 497, 623
HpyAV	CCTTC	3 cut(s)	658, 713, 819
HpyCH4III	ACNGT	1 cut(s)	865
HpyCH4IV	ACGT	1 cut(s)	963
HpyCH4V	TGCA	5 cut(s)	99, 344, 556, 632, 794
HpyF10VI	GCNNNNNNNGC	3 cut(s)	749, 791, 827
HpyF3I	CTNAG	2 cut(s)	276, 656
HpySE526I	ACGT	1 cut(s)	963
Hsp92I	GRCGYC	1 cut(s)	841
Hsp92II	CATG	2 cut(s)	708, 779
HspAI	GCGC	1 cut(s)	841
KasI	GGCGCC	1 cut(s)	840
Kzo9I	GATC	4 cut(s)	493, 548, 994, 1138
LguI	GCTCTTC	1 cut(s)	1070
LmnI	GCTCC	2 cut(s)	569, 815
Lsp1109I	GCAGC	4 cut(s)	696, 805, 820, 1085
LweI	GCATC	3 cut(s)	331, 581, 1010
MaeI	CTAG	4 cut(s)	470, 822, 944, 1167
MaeII	ACGT	1 cut(s)	963
MaeIII	GTNAC	1 cut(s)	1106
MalI	GATC	4 cut(s)	495, 550, 996, 1140
MboI	GATC	4 cut(s)	493, 548, 994, 1138
MboII	GAAGA	5 cut(s)	72, 264, 908, 923, 1087
MflI	RGATCY	3 cut(s)	493, 548, 1138
MhlI	GDGCHC	1 cut(s)	1033
MlsI	TGGCCA	1 cut(s)	1114
MluCI	AATT	6 cut(s)	15, 284, 500, 576, 1040, 1044
MluNI	TGGCCA	1 cut(s)	1114
Mly113I	GGCGCC	1 cut(s)	841
MlyI	GAGTC	5 cut(s)	229, 533, 542, 722, 931
Mox20I	TGGCCA	1 cut(s)	1114
MscI	TGGCCA	1 cut(s)	1114
MseI	TTAA	4 cut(s)	767, 930, 1035, 1043
MslI	CAYNNNNRTG	2 cut(s)	398, 849
Msp20I	TGGCCA	1 cut(s)	1114
MspA1I	CMGCKG	1 cut(s)	1148
MspI	CCGG	1 cut(s)	855
MspR9I	CCNGG	4 cut(s)	529, 919, 1068, 1131
MvaI	CCWGG	4 cut(s)	529, 919, 1068, 1131
MwoI	GCNNNNNNNGC	3 cut(s)	749, 791, 827
NarI	GGCGCC	1 cut(s)	841
NdeI	CATATG	1 cut(s)	399
NdeII	GATC	4 cut(s)	493, 548, 994, 1138
NlaIII	CATG	2 cut(s)	708, 779
NlaIV	GGNNCC	4 cut(s)	352, 495, 842, 1140
NmeAIII	GCCGAG	1 cut(s)	1127
NmuCI	GTSAC	1 cut(s)	1106
PciSI	GCTCTTC	1 cut(s)	1070
PfeI	GAWTC	4 cut(s)	593, 701, 899, 1173
PflMI	CCANNNNNTGG	2 cut(s)	616, 1148
PkrI	GCNGC	5 cut(s)	179, 711, 810, 820, 1100
PleI	GAGTC	5 cut(s)	228, 532, 541, 722, 930
PluTI	GGCGCC	1 cut(s)	844
PpsI	GAGTC	5 cut(s)	228, 532, 541, 722, 930
PshBI	ATTAAT	1 cut(s)	1043
PsiI	TTATAA	1 cut(s)	476
Psp6I	CCWGG	4 cut(s)	527, 917, 1066, 1129
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	4 cut(s)	527, 917, 1066, 1129
PspN4I	GGNNCC	4 cut(s)	352, 495, 842, 1140
PsuI	RGATCY	3 cut(s)	493, 548, 1138
PvuII	CAGCTG	1 cut(s)	1148
RsaI	GTAC	2 cut(s)	372, 661
RsaNI	GTAC	2 cut(s)	371, 660
RseI	CAYNNNNRTG	2 cut(s)	398, 849
SapI	GCTCTTC	1 cut(s)	1070
SaqAI	TTAA	4 cut(s)	767, 930, 1035, 1043
SatI	GCNGC	5 cut(s)	178, 710, 809, 819, 1099
Sau3AI	GATC	4 cut(s)	493, 548, 994, 1138
SchI	GAGTC	5 cut(s)	229, 533, 542, 722, 931
ScrFI	CCNGG	4 cut(s)	529, 919, 1068, 1131
SduI	GDGCHC	1 cut(s)	1033
SfaNI	GCATC	3 cut(s)	331, 581, 1010
SfcI	CTRYAG	3 cut(s)	732, 888, 977
SfoI	GGCGCC	1 cut(s)	842
SmiMI	CAYNNNNRTG	2 cut(s)	398, 849
SmlI	CTYRAG	2 cut(s)	621, 1024
SmoI	CTYRAG	2 cut(s)	621, 1024
Sse9I	AATT	6 cut(s)	15, 284, 500, 576, 1040, 1044
SsiI	CCGC	1 cut(s)	178
SspDI	GGCGCC	1 cut(s)	840
SspMI	CTAG	4 cut(s)	470, 822, 944, 1167
StyD4I	CCNGG	4 cut(s)	527, 917, 1066, 1129
TaaI	ACNGT	1 cut(s)	865
TaiI	ACGT	1 cut(s)	966
TaqI	TCGA	1 cut(s)	781
TasI	AATT	6 cut(s)	15, 284, 500, 576, 1040, 1044
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	4 cut(s)	593, 701, 899, 1173
Tru1I	TTAA	4 cut(s)	767, 930, 1035, 1043
Tru9I	TTAA	4 cut(s)	767, 930, 1035, 1043
TscAI	CASTG	2 cut(s)	549, 660
TseFI	GTSAC	1 cut(s)	1106
TseI	GCWGC	4 cut(s)	709, 808, 818, 1098
Tsp45I	GTSAC	1 cut(s)	1106
TspDTI	ATGAA	2 cut(s)	693, 909
TspRI	CASTG	2 cut(s)	549, 660
Van91I	CCANNNNNTGG	2 cut(s)	616, 1148
VspI	ATTAAT	1 cut(s)	1043
XcmI	CCANNNNNNNNNTGG	1 cut(s)	504
XspI	CTAG	4 cut(s)	470, 822, 944, 1167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.