Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004803

Physical Location & Seq

Genomic Coordinates Reverse (-)

10097093 .. 10105576

Gene Structure 8484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0128200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2022 bp

ATGCATTCGCTGAGCTTCAAGGTTTCCACTGACTACTGCGGGAGGTGTTGTTTTCCGGGTCCGGGAAGGGTTGCGGAGTCGGAGGTCCGGCCCAGACAGGTCCGGTTCGGGTTTAGGGATTTCGGGAGAGGCGTTAGGGTTGCGGCGTGTGCTTCCGAGTCGGAGAGGAACGGGAGTAATGGCTGGAGCGGCAGCCGGAGTTCGAGTCCGACTCCGGGCCCGGGTCCGAGACCGAGTTCGTTTCTGTCTCGGAGCCAGACGTATGCTCTGTTGAAGCAGCAAATGGAGGTTGCTGCGAAATCTGAGGATTATGAAGAGGCGGCGAGGATACGTGACTCGCTGAAGAGGTTAGAGAAGGAAGAGCCGGTTTTGTGGCTCCGGAGGTTGATAAAGGAGGCCGTGGCGGAAGAGAGGTTTGAGGATGCGGCTAATTTTCGAGATGAGCTTAAGGAAATTGCGCCTCACTCTTTTCTGAAATGTTCAAGTGACGCAACGACCTTGGGCATTCGGGTTCAAGTAAGGAGTGTGTACATAGAGGGCCGAAGTCAGCCTTCAAAGGGGCAACACTTCTTTGCATATAGAATAAGAATTACCAATAACTCCGACCACCCTGTTCAACTTCTTAGAAGGCATTGGATCGTCACTGATGCCAATGGAAAATCCGAGAATGTGTGGGGAATTGGTGTTATCGGTCAGCAGCCAGTGATTCTTCCTCAGACTAGTTTTGAATACTCATCTGCATGCCCCTTGAGCACTCCTACTGGTAGAATGGAAGGTGACTTTGAGATGAAACACATCAATGGGTTAAGTTCACAATCGTTTAACTTACTGGCTTTTGGAATGCTTCATTTGTCCTCTGGAGGCACTGCGAGAGATGAAAGAAATATTACTATTGTAACTTATAGGTTTGTTAGAATTTGGATGGTCTCCTTATCTTGGCAATCTATGGACCAAGGTGTTGAAACTGCTTTTGGGTGTCTTGATCTGTGGCCTATCAATATGAAGAGCAATATAATGGGAACAAAAAGTTCTTGGGAGCCAATCATGACTGCAGATACAACAGCCTCGAGTTACTGGTTTAACTGGAGGTTTTTGCTTTGTTTTATATGGGTCACGATCTCCCTGACTCTTTCAGTACTTCTCATATTGAGATATGAAGGGCATCAAAATTCGAGGCGTAATAATAACAGCAGAGAAACCCAGGAAGAAGAAGAAGAAACAATTGGAACTTTGTATGAGGATGAAACTTGGAGACCATGCCTCAAAGGAATCCACCCAGCTTGGCTTCTGGCTTTTAGACTTGTTGCTTTCTTCGTGCTTTTGGTTCTGCTCATCATCACAGCTTGTGTTGATGGAGGTACCATCTTTTATTTCTATACACAGTGGACATTCACATTGGTTACTATTTATTTTGGGCTTGGATCATTGCTCTCCATTCGAGGATGCTATCGATACCATAAGAAAACTGCTGGTGAAAGGGTTGATAATGTAGAGGTAGATGCAGAACAGGGCACCATAGAGAAATACATAGACCCTCATGTTGAACAACAACATCAACCGCGCCATCCTGCAGGCATTTTGGGTTATGTCTTCCAAATAATTTTCCAGATGAACGCAGGAGCTGTCATCCTCACGGACTGTGTCTTTTGGTTTGTAATTGTTCCATTTCTTACAATCAAAGATTACAACTTGAACTTTCTGATTATAAATATGCACACAATCAATGCTGTTTTCTTGCTCGGTGAAACTGTTTTGAATTGCTTGCCATTTCCTTGGTTCAGAATAGGATATTTCTTCATGTGGACTATCACTTATGTAGTTTTCCAGTGGATCTGTCATGCTTGTGTCAAACTTTGGTGGCCATATCCATTTCTGGACTTGTCGTCTCCGTATGCTCCATTATGGTATTTGTCGGTTGGTCTACTGCACTTCCCATGCTATGGCATTTTTGCTCTGATAATGAAGCTGAAACACCATCTGTTTTCGACAAAGTGCCCCGACTCTTATCAATGCATGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CS SKI

Protein Analysis

673

Amino Acids

77.27

Weight (kDa)

8.03

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVR	PF02151	91 - 120	5.8e-07	UvrB/uvrC motif
DUF525	PF04379	181 - 264	2.2e-32	ApaG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35500
fragaria_vesca	FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_2g06760 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010 FvH4_5g23010
malus_domestica	MD06G1026400.v1.1
prunus_persica	Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1 Prupe.5G028300_v2.0.a1
pyrus_communis	pycom06g02160
rosa_chinensis	RchiOBHm_Chr7g0211741
rosa_laevigata	RLG00000002972
rosa_multiflora	Rmu_sc0001875.1_g000021
rosa_roxburghii	Rroxscaffold_3G00247480
rosa_rugosa	Rorug07G0128200
rosa_samantha	Rh7AG260900 Rh7BG254400 Rh7CG277400 Rh7DG267500
rosa_wichuraiana	Rw7G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1706
Acc65I	GGTACC	1 cut(s)	1358
AccB1I	GGYRCC	2 cut(s)	1358, 1511
AccB7I	CCANNNNNTGG	1 cut(s)	1940
AccBSI	CCGCTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	1921
AccII	CGCG	1 cut(s)	1561
AccIII	TCCGGA	1 cut(s)	378
AciI	CCGC	8 cut(s)	39, 74, 143, 189, 320, 404, 425, 1559
AclWI	GGATC	3 cut(s)	644, 1429, 1838
AcoI	YGGCCR	1 cut(s)	1859
AcsI	RAATTY	2 cut(s)	915, 1168
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	3 cut(s)	530, 1137, 1360
AfiI	CCNNNNNNNGG	6 cut(s)	62, 215, 221, 557, 936, 1940
AflII	CTTAAG	1 cut(s)	446
AhdI	GACNNNNNGTC	1 cut(s)	1882
AhlI	ACTAGT	1 cut(s)	719
AjnI	CCWGG	1 cut(s)	1200
AjuI	GAANNNNNNNTTGG	4 cut(s)	954, 986, 1206, 1238
AluBI	AGCT	6 cut(s)	15, 445, 1280, 1343, 1622, 1966
AluI	AGCT	6 cut(s)	15, 445, 1280, 1343, 1622, 1966
Alw21I	GWGCWC	1 cut(s)	755
Alw26I	GTCTC	5 cut(s)	223, 252, 931, 1246, 1890
AlwI	GGATC	3 cut(s)	644, 1429, 1838
AlwNI	CAGNNNCTG	1 cut(s)	1622
Ama87I	CYCGRG	2 cut(s)	220, 1066
Aor13HI	TCCGGA	1 cut(s)	378
AoxI	GGCC	6 cut(s)	89, 217, 396, 538, 989, 1859
ApaI	GGGCCC	1 cut(s)	221
ApeKI	GCWGC	4 cut(s)	192, 277, 293, 697
ApoI	RAATTY	2 cut(s)	915, 1168
Asp718I	GGTACC	1 cut(s)	1358
AspLEI	GCGC	2 cut(s)	460, 1563
AspS9I	GGNCC	9 cut(s)	59, 85, 90, 100, 217, 218, 224, 538, 949
AsuC2I	CCSGG	5 cut(s)	57, 63, 216, 221, 222
AsuHPI	GGTGA	3 cut(s)	788, 1484, 1754
AvaI	CYCGRG	2 cut(s)	220, 1066
AvaII	GGWCC	5 cut(s)	59, 85, 100, 224, 949
BaeGI	GKGCMC	3 cut(s)	221, 1514, 1997
BalI	TGGCCA	1 cut(s)	1861
BanI	GGYRCC	2 cut(s)	1358, 1511
BanII	GRGCYC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	1582
Bbv12I	GWGCWC	1 cut(s)	755
BbvI	GCAGC	4 cut(s)	204, 280, 289, 709
BccI	CCATC	5 cut(s)	916, 1346, 1370, 1572, 1983
BceAI	ACGGC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	1202
BciVI	GTATCC	1 cut(s)	321
BcnI	CCSGG	5 cut(s)	57, 63, 216, 221, 222
BcoDI	GTCTC	5 cut(s)	223, 252, 931, 1246, 1890
BcuI	ACTAGT	1 cut(s)	719
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	2 cut(s)	1050, 1569
BfrI	CTTAAG	1 cut(s)	446
BfuI	GTATCC	1 cut(s)	321
BisI	GCNGC	8 cut(s)	144, 190, 193, 278, 294, 321, 426, 698
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	8 cut(s)	145, 191, 194, 279, 295, 322, 427, 699
BmcAI	AGTACT	1 cut(s)	1137
Bme1390I	CCNGG	6 cut(s)	57, 63, 216, 221, 222, 1202
Bme18I	GGWCC	5 cut(s)	59, 85, 100, 224, 949
BmeRI	GACNNNNNGTC	1 cut(s)	1882
BmeT110I	CYCGRG	2 cut(s)	220, 1066
BmgT120I	GGNCC	9 cut(s)	59, 85, 90, 100, 217, 218, 224, 538, 949
BmiI	GGNNCC	8 cut(s)	60, 219, 225, 254, 377, 1038, 1360, 1513
BmrFI	CCNGG	6 cut(s)	57, 63, 216, 221, 222, 1202
BmsI	GCATC	5 cut(s)	412, 637, 1171, 1433, 1489
BpiI	GAAGAC	1 cut(s)	1582
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	3 cut(s)	205, 879, 1105
Bpu1102I	GCTNAGC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	769
BpuMI	CCSGG	5 cut(s)	57, 63, 216, 221, 222
Bsa29I	ATCGAT	1 cut(s)	1450
BsaAI	YACGTR	1 cut(s)	332
BsaI	GGTCTC	3 cut(s)	223, 931, 1246
BsaJI	CCNNGG	6 cut(s)	220, 399, 498, 952, 1200, 1772
BsaWI	WCCGGW	2 cut(s)	102, 378
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 64, 190, 220
Bsc4I	CCNNNNNNNGG	6 cut(s)	62, 215, 221, 557, 936, 1940
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	6 cut(s)	701, 766, 834, 1079, 1088, 1825
Bse3DI	GCAATG	1 cut(s)	1424
BseAI	TCCGGA	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	1202
BseCI	ATCGAT	1 cut(s)	1450
BseDI	CCNNGG	6 cut(s)	220, 399, 498, 952, 1200, 1772
BseGI	GGATG	6 cut(s)	427, 927, 1246, 1448, 1564, 1626
BseLI	CCNNNNNNNGG	6 cut(s)	62, 215, 221, 557, 936, 1940
BseMI	GCAATG	1 cut(s)	1424
BseMII	CTCAG	2 cut(s)	294, 728
BseNI	ACTGG	6 cut(s)	701, 766, 834, 1079, 1088, 1825
BseSI	GKGCMC	3 cut(s)	221, 1514, 1997
BseXI	GCAGC	4 cut(s)	204, 280, 289, 709
BseYI	CCCAGC	1 cut(s)	1276
BsgI	GTGCAG	1 cut(s)	1910
Bsh1236I	CGCG	1 cut(s)	1561
BshFI	GGCC	6 cut(s)	91, 219, 398, 540, 991, 1861
BshNI	GGYRCC	2 cut(s)	1358, 1511
BshVI	ATCGAT	1 cut(s)	1450
BsiHKAI	GWGCWC	1 cut(s)	755
BsiHKCI	CYCGRG	2 cut(s)	220, 1066
BsiSI	CCGG	9 cut(s)	56, 62, 88, 103, 196, 215, 221, 365, 379
BslI	CCNNNNNNNGG	6 cut(s)	62, 215, 221, 557, 936, 1940
BsmAI	GTCTC	5 cut(s)	223, 252, 931, 1246, 1890
BsmBI	CGTCTC	1 cut(s)	1890
BsmI	GAATGC	3 cut(s)	4, 504, 846
BsnI	GGCC	6 cut(s)	91, 219, 398, 540, 991, 1861
Bso31I	GGTCTC	3 cut(s)	223, 931, 1246
BsoBI	CYCGRG	2 cut(s)	220, 1066
Bsp120I	GGGCCC	1 cut(s)	217
Bsp1286I	GDGCHC	4 cut(s)	221, 755, 1514, 1997
Bsp13I	TCCGGA	1 cut(s)	378
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	5 cut(s)	636, 982, 1116, 1421, 1830
Bsp1720I	GCTNAGC	1 cut(s)	11
BspACI	CCGC	8 cut(s)	39, 74, 143, 189, 320, 404, 425, 1559
BspANI	GGCC	6 cut(s)	91, 219, 398, 540, 991, 1861
BspCNI	CTCAG	2 cut(s)	295, 727
BspDI	ATCGAT	1 cut(s)	1450
BspEI	TCCGGA	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	1561
BspHI	TCATGA	1 cut(s)	1044
BspLI	GGNNCC	8 cut(s)	60, 219, 225, 254, 377, 1038, 1360, 1513
BspMAI	CTGCAG	2 cut(s)	1054, 1573
BspPI	GGATC	3 cut(s)	644, 1429, 1838
BspQI	GCTCTTC	2 cut(s)	354, 998
BspT107I	GGYRCC	2 cut(s)	1358, 1511
BspTI	CTTAAG	1 cut(s)	446
BspTNI	GGTCTC	3 cut(s)	223, 931, 1246
BsrBI	CCGCTC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	1424
BsrFI	RCCGGY	1 cut(s)	364
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	6 cut(s)	701, 766, 834, 1079, 1088, 1825
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	6 cut(s)	220, 399, 498, 952, 1200, 1772
BssMI	GATC	5 cut(s)	636, 982, 1116, 1421, 1830
BssT1I	CCWWGG	3 cut(s)	498, 952, 1772
Bst2UI	CCWGG	1 cut(s)	1202
Bst4CI	ACNGT	3 cut(s)	1383, 1640, 1750
Bst6I	CTCTTC	5 cut(s)	309, 338, 354, 402, 998
BstAFI	CTTAAG	1 cut(s)	446
BstAUI	TGTACA	1 cut(s)	528
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	3 cut(s)	742, 1573, 1763
BstDEI	CTNAG	4 cut(s)	11, 303, 623, 714
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	6 cut(s)	427, 927, 1246, 1448, 1564, 1626
BstFNI	CGCG	1 cut(s)	1561
BstHHI	GCGC	2 cut(s)	460, 1563
BstKTI	GATC	5 cut(s)	639, 985, 1119, 1424, 1833
BstMAI	GTCTC	5 cut(s)	223, 252, 931, 1246, 1890
BstMBI	GATC	5 cut(s)	636, 982, 1116, 1421, 1830
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 189, 750
BstNI	CCWGG	1 cut(s)	1202
BstNSI	RCATGY	1 cut(s)	744
BstSCI	CCNGG	6 cut(s)	55, 61, 214, 219, 220, 1200
BstSFI	CTRYAG	2 cut(s)	1050, 1569
BstSLI	GKGCMC	3 cut(s)	221, 1514, 1997
BstUI	CGCG	1 cut(s)	1561
BstV1I	GCAGC	4 cut(s)	204, 280, 289, 709
BstV2I	GAAGAC	1 cut(s)	1582
BstX2I	RGATCY	1 cut(s)	1830
BstXI	CCANNNNNNTGG	1 cut(s)	1773
BstYI	RGATCY	1 cut(s)	1830
Bsu15I	ATCGAT	1 cut(s)	1450
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	6 cut(s)	91, 219, 398, 540, 991, 1861
BsuTUI	ATCGAT	1 cut(s)	1450
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	6 cut(s)	427, 927, 1246, 1448, 1564, 1626
BtsI	GCAGTG	1 cut(s)	864
BtsIMutI	CAGTG	6 cut(s)	27, 642, 708, 864, 1388, 1832
Cac8I	GCNNGC	3 cut(s)	742, 1573, 1763
CaiI	CAGNNNCTG	1 cut(s)	1622
CciI	TCATGA	1 cut(s)	1044
CfoI	GCGC	2 cut(s)	460, 1563
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	9 cut(s)	59, 85, 90, 100, 217, 218, 224, 538, 949
Cfr9I	CCCGGG	1 cut(s)	220
ClaI	ATCGAT	1 cut(s)	1450
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	3 cut(s)	529, 1136, 1359
CspCI	CAANNNNNGTGG	2 cut(s)	1262, 1297
CviAII	CATG	8 cut(s)	741, 1045, 1257, 1538, 1798, 1838, 1935, 2014
CviQI	GTAC	3 cut(s)	529, 1136, 1359
DdeI	CTNAG	4 cut(s)	11, 303, 623, 714
DpnI	GATC	5 cut(s)	638, 984, 1118, 1423, 1832
DpnII	GATC	5 cut(s)	636, 982, 1116, 1421, 1830
DriI	GACNNNNNGTC	1 cut(s)	1882
EaeI	YGGCCR	1 cut(s)	1859
Eam1104I	CTCTTC	5 cut(s)	309, 338, 354, 402, 998
Eam1105I	GACNNNNNGTC	1 cut(s)	1882
EarI	CTCTTC	5 cut(s)	309, 338, 354, 402, 998
EciI	GGCGGA	1 cut(s)	419
Eco130I	CCWWGG	3 cut(s)	498, 952, 1772
Eco24I	GRGCYC	1 cut(s)	221
Eco31I	GGTCTC	3 cut(s)	223, 931, 1246
Eco47I	GGWCC	5 cut(s)	59, 85, 100, 224, 949
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	2 cut(s)	220, 1066
EcoRII	CCWGG	1 cut(s)	1200
EcoT14I	CCWWGG	3 cut(s)	498, 952, 1772
EcoT22I	ATGCAT	2 cut(s)	6, 2015
EcoT38I	GRGCYC	1 cut(s)	221
ErhI	CCWWGG	3 cut(s)	498, 952, 1772
Esp3I	CGTCTC	1 cut(s)	1890
FaeI	CATG	8 cut(s)	744, 1048, 1260, 1541, 1801, 1841, 1938, 2017
FalI	AAGNNNNNCTT	2 cut(s)	535, 567
FatI	CATG	8 cut(s)	740, 1044, 1256, 1537, 1797, 1837, 1934, 2013
FauI	CCCGC	1 cut(s)	32
FblI	GTMKAC	1 cut(s)	1921
Fnu4HI	GCNGC	8 cut(s)	144, 190, 193, 278, 294, 321, 426, 698
FokI	GGATG	6 cut(s)	434, 934, 1253, 1455, 1551, 1613
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	8 cut(s)	144, 190, 193, 278, 294, 321, 426, 698
FspBI	CTAG	1 cut(s)	720
GlaI	GCGC	2 cut(s)	459, 1562
GluI	GCNGC	8 cut(s)	144, 190, 193, 278, 294, 321, 426, 698
GsaI	CCCAGC	1 cut(s)	1280
GsuI	CTGGAG	3 cut(s)	205, 879, 1105
HaeIII	GGCC	6 cut(s)	91, 219, 398, 540, 991, 1861
HapII	CCGG	9 cut(s)	56, 62, 88, 103, 196, 215, 221, 365, 379
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	2 cut(s)	460, 1563
Hin1II	CATG	8 cut(s)	744, 1048, 1260, 1541, 1801, 1841, 1938, 2017
Hin6I	GCGC	2 cut(s)	458, 1561
HinP1I	GCGC	2 cut(s)	458, 1561
HinfI	GANTC	9 cut(s)	77, 158, 205, 211, 335, 706, 1126, 1269, 2000
HpaII	CCGG	9 cut(s)	56, 62, 88, 103, 196, 215, 221, 365, 379
HphI	GGTGA	3 cut(s)	788, 1484, 1754
Hpy166II	GTNNAC	5 cut(s)	529, 812, 1386, 1803, 1922
Hpy188III	TCNNGA	9 cut(s)	124, 379, 437, 858, 980, 1045, 1114, 1606, 1874
Hpy8I	GTNNAC	5 cut(s)	529, 812, 1386, 1803, 1922
HpyAV	CCTTC	6 cut(s)	60, 349, 561, 621, 767, 1151
HpyCH4III	ACNGT	3 cut(s)	1383, 1640, 1750
HpyCH4IV	ACGT	2 cut(s)	260, 331
HpyCH4V	TGCA	9 cut(s)	4, 575, 740, 1052, 1502, 1571, 1714, 1927, 2013
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 189, 750
HpyF3I	CTNAG	4 cut(s)	11, 303, 623, 714
HpySE526I	ACGT	2 cut(s)	260, 331
Hsp92II	CATG	8 cut(s)	744, 1048, 1260, 1541, 1801, 1841, 1938, 2017
HspAI	GCGC	2 cut(s)	458, 1561
Kpn2I	TCCGGA	1 cut(s)	378
KpnI	GGTACC	1 cut(s)	1362
Kzo9I	GATC	5 cut(s)	636, 982, 1116, 1421, 1830
LguI	GCTCTTC	2 cut(s)	354, 998
LmnI	GCTCC	6 cut(s)	186, 252, 381, 1036, 1619, 1900
Lsp1109I	GCAGC	4 cut(s)	204, 280, 289, 709
LweI	GCATC	5 cut(s)	412, 637, 1171, 1433, 1489
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	2 cut(s)	260, 331
MaeIII	GTNAC	8 cut(s)	332, 485, 640, 776, 895, 1070, 1111, 1399
MalI	GATC	5 cut(s)	638, 984, 1118, 1423, 1832
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	5 cut(s)	636, 982, 1116, 1421, 1830
MfeI	CAATTG	1 cut(s)	1221
MflI	RGATCY	1 cut(s)	1830
MhlI	GDGCHC	4 cut(s)	221, 755, 1514, 1997
MlsI	TGGCCA	1 cut(s)	1861
MluNI	TGGCCA	1 cut(s)	1861
MlyI	GAGTC	7 cut(s)	86, 167, 205, 214, 329, 1120, 1994
MmeI	TCCRAC	4 cut(s)	60, 141, 233, 627
Mox20I	TGGCCA	1 cut(s)	1861
Mph1103I	ATGCAT	2 cut(s)	6, 2015
MroI	TCCGGA	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	1861
MseI	TTAA	4 cut(s)	447, 806, 822, 1080
MslI	CAYNNNNRTG	3 cut(s)	739, 798, 1842
Msp20I	TGGCCA	1 cut(s)	1861
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	9 cut(s)	56, 62, 88, 103, 196, 215, 221, 365, 379
MspR9I	CCNGG	6 cut(s)	57, 63, 216, 221, 222, 1202
MunI	CAATTG	1 cut(s)	1221
Mva1269I	GAATGC	3 cut(s)	4, 504, 846
MvaI	CCWGG	1 cut(s)	1202
MvnI	CGCG	1 cut(s)	1561
MwoI	GCNNNNNNNGC	3 cut(s)	149, 189, 750
NciI	CCSGG	5 cut(s)	57, 63, 216, 221, 222
NdeII	GATC	5 cut(s)	636, 982, 1116, 1421, 1830
NlaIII	CATG	8 cut(s)	744, 1048, 1260, 1541, 1801, 1841, 1938, 2017
NlaIV	GGNNCC	8 cut(s)	60, 219, 225, 254, 377, 1038, 1360, 1513
NmuCI	GTSAC	5 cut(s)	332, 485, 640, 776, 1111
NsiI	ATGCAT	2 cut(s)	6, 2015
NspI	RCATGY	1 cut(s)	744
PaeI	GCATGC	1 cut(s)	744
PaeR7I	CTCGAG	1 cut(s)	1066
PagI	TCATGA	1 cut(s)	1044
PciSI	GCTCTTC	2 cut(s)	354, 998
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	3 cut(s)	4, 504, 846
PfeI	GAWTC	2 cut(s)	706, 1269
PflFI	GACNNNGTC	1 cut(s)	1640
PflMI	CCANNNNNTGG	1 cut(s)	1940
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	8 cut(s)	145, 191, 194, 279, 295, 322, 427, 699
PleI	GAGTC	7 cut(s)	85, 166, 205, 213, 329, 1120, 1994
PpsI	GAGTC	7 cut(s)	85, 166, 205, 213, 329, 1120, 1994
Ppu21I	YACGTR	1 cut(s)	332
PsiI	TTATAA	1 cut(s)	1706
Psp6I	CCWGG	1 cut(s)	1200
PspFI	CCCAGC	1 cut(s)	1276
PspGI	CCWGG	1 cut(s)	1200
PspN4I	GGNNCC	8 cut(s)	60, 219, 225, 254, 377, 1038, 1360, 1513
PspOMI	GGGCCC	1 cut(s)	217
PspPI	GGNCC	9 cut(s)	59, 85, 90, 100, 217, 218, 224, 538, 949
PspXI	VCTCGAGB	1 cut(s)	1066
PstI	CTGCAG	2 cut(s)	1054, 1573
PstNI	CAGNNNCTG	1 cut(s)	1622
PsuI	RGATCY	1 cut(s)	1830
PsyI	GACNNNGTC	1 cut(s)	1640
RsaI	GTAC	3 cut(s)	530, 1137, 1360
RsaNI	GTAC	3 cut(s)	529, 1136, 1359
RseI	CAYNNNNRTG	3 cut(s)	739, 798, 1842
SapI	GCTCTTC	2 cut(s)	354, 998
SaqAI	TTAA	4 cut(s)	447, 806, 822, 1080
SatI	GCNGC	8 cut(s)	144, 190, 193, 278, 294, 321, 426, 698
Sau3AI	GATC	5 cut(s)	636, 982, 1116, 1421, 1830
Sau96I	GGNCC	9 cut(s)	59, 85, 90, 100, 217, 218, 224, 538, 949
SbfI	CCTGCAGG	1 cut(s)	1573
ScaI	AGTACT	1 cut(s)	1137
SchI	GAGTC	7 cut(s)	86, 167, 205, 214, 329, 1120, 1994
ScrFI	CCNGG	6 cut(s)	57, 63, 216, 221, 222, 1202
SdaI	CCTGCAGG	1 cut(s)	1573
SduI	GDGCHC	4 cut(s)	221, 755, 1514, 1997
SfaNI	GCATC	5 cut(s)	412, 637, 1171, 1433, 1489
SfcI	CTRYAG	2 cut(s)	1050, 1569
Sfr274I	CTCGAG	1 cut(s)	1066
SinI	GGWCC	5 cut(s)	59, 85, 100, 224, 949
SlaI	CTCGAG	1 cut(s)	1066
SmaI	CCCGGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	3 cut(s)	739, 798, 1842
SmlI	CTYRAG	3 cut(s)	446, 748, 1066
SmoI	CTYRAG	3 cut(s)	446, 748, 1066
SpeI	ACTAGT	1 cut(s)	719
SphI	GCATGC	1 cut(s)	744
Sse8387I	CCTGCAGG	1 cut(s)	1573
SsiI	CCGC	8 cut(s)	39, 74, 143, 189, 320, 404, 425, 1559
SspI	AATATT	1 cut(s)	886
SspMI	CTAG	1 cut(s)	720
StyD4I	CCNGG	6 cut(s)	55, 61, 214, 219, 220, 1200
StyI	CCWWGG	3 cut(s)	498, 952, 1772
TaaI	ACNGT	3 cut(s)	1383, 1640, 1750
TaiI	ACGT	2 cut(s)	263, 334
TaqI	TCGA	7 cut(s)	203, 436, 1067, 1172, 1438, 1450, 1985
TaqII	GACCGA	2 cut(s)	247, 680
TatI	WGTACW	2 cut(s)	528, 1135
TauI	GCSGC	4 cut(s)	146, 192, 323, 428
TfiI	GAWTC	2 cut(s)	706, 1269
Tru1I	TTAA	4 cut(s)	447, 806, 822, 1080
Tru9I	TTAA	4 cut(s)	447, 806, 822, 1080
TscAI	CASTG	6 cut(s)	34, 649, 708, 871, 1388, 1832
TseFI	GTSAC	5 cut(s)	332, 485, 640, 776, 1111
TseI	GCWGC	4 cut(s)	192, 277, 293, 697
Tsp45I	GTSAC	5 cut(s)	332, 485, 640, 776, 1111
TspGWI	ACGGA	2 cut(s)	1649, 1878
TspMI	CCCGGG	1 cut(s)	220
TspRI	CASTG	6 cut(s)	34, 649, 708, 871, 1388, 1832
Tth111I	GACNNNGTC	1 cut(s)	1640
Van91I	CCANNNNNTGG	1 cut(s)	1940
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	5 cut(s)	59, 85, 100, 224, 949
XapI	RAATTY	2 cut(s)	915, 1168
XceI	RCATGY	1 cut(s)	744
XhoI	CTCGAG	1 cut(s)	1066
XmaI	CCCGGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	1921
XspI	CTAG	1 cut(s)	720
ZrmI	AGTACT	1 cut(s)	1137
Zsp2I	ATGCAT	2 cut(s)	6, 2015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.